Wall clock time and date at job start Mon Mar 30 2020 05:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47213 * 2 1 4 4 C 1.53003 * 109.47037 * 120.00073 * 2 1 3 5 5 H 1.08996 * 109.78490 * 187.08685 * 4 2 1 6 6 C 1.53691 * 109.70164 * 307.83426 * 4 2 1 7 7 N 1.46900 * 109.25988 * 173.68850 * 6 4 2 8 8 C 1.46897 * 111.26953 * 296.75790 * 7 6 4 9 9 C 1.53240 * 109.34121 * 63.09803 * 8 7 6 10 10 N 1.47078 * 109.62799 * 66.60521 * 4 2 1 11 11 C 1.34778 * 120.88202 * 9.10290 * 10 4 2 12 12 O 1.21278 * 120.00043 * 355.48954 * 11 10 4 13 13 C 1.50700 * 120.00220 * 175.48458 * 11 10 4 14 14 S 1.80996 * 109.47333 * 180.02562 * 13 11 10 15 15 C 1.76206 * 100.00143 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99596 * 359.97438 * 15 14 13 17 17 C 1.38792 * 120.00000 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00218 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00105 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46922 * 59.99317 * 19 17 15 21 21 H 1.48501 * 109.47219 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46903 * 299.99663 * 19 17 15 23 23 H 1.08996 * 109.46970 * 310.54323 * 1 2 3 24 24 H 1.09004 * 109.46672 * 70.53770 * 1 2 3 25 25 H 1.08998 * 109.47178 * 190.53696 * 1 2 3 26 26 H 1.09002 * 109.46667 * 239.99923 * 2 1 3 27 27 H 1.09000 * 109.47069 * 294.86756 * 3 2 1 28 28 H 1.09003 * 109.47476 * 54.86706 * 3 2 1 29 29 H 1.09001 * 109.47196 * 174.86692 * 3 2 1 30 30 H 1.09007 * 109.65209 * 53.68248 * 6 4 2 31 31 H 1.09000 * 109.44267 * 293.56562 * 6 4 2 32 32 H 1.00892 * 111.00700 * 172.60515 * 7 6 4 33 33 H 1.09005 * 109.49166 * 303.14396 * 8 7 6 34 34 H 1.08995 * 109.49422 * 183.06279 * 8 7 6 35 35 H 1.09006 * 109.63099 * 186.46353 * 9 8 7 36 36 H 1.08994 * 109.62986 * 65.88266 * 9 8 7 37 37 H 1.09004 * 109.47514 * 300.00335 * 13 11 10 38 38 H 1.09002 * 109.47119 * 59.99900 * 13 11 10 39 39 H 0.96999 * 119.99945 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1226 -0.6160 1.3200 6 6 1.3760 -0.1238 2.4999 7 7 1.7544 -0.9185 3.6760 8 6 1.2561 -2.2964 3.5707 9 6 1.9095 -2.9817 2.3659 10 7 1.6861 -2.1469 1.1757 11 6 1.1758 -2.6756 0.0458 12 8 0.9264 -1.9590 -0.9002 13 6 0.9152 -4.1573 -0.0420 14 16 0.2359 -4.5549 -1.6719 15 6 0.0324 -6.2969 -1.5020 16 1 0.3078 -6.7852 -0.5789 17 6 -0.4809 -7.0415 -2.5548 18 7 -0.8162 -6.4464 -3.6800 19 14 -0.6960 -8.8884 -2.3749 20 1 -1.6228 -9.1715 -1.2497 21 1 -1.2584 -9.4459 -3.6312 22 1 0.6217 -9.5158 -2.1007 23 1 -0.3633 0.6680 0.7809 24 1 -0.3633 0.3424 -0.9690 25 1 -0.3633 -1.0103 0.1879 26 1 1.8933 -0.5139 -0.8900 27 1 1.7537 1.9290 -0.9324 28 1 1.6036 1.9822 0.8404 29 1 3.1262 1.4438 0.0919 30 1 0.2923 -0.1404 2.3830 31 1 1.7117 0.9047 2.6327 32 1 1.4324 -0.4817 4.5265 33 1 0.1742 -2.2829 3.4388 34 1 1.5053 -2.8437 4.4798 35 1 1.4599 -3.9631 2.2144 36 1 2.9798 -3.0894 2.5418 37 1 1.8493 -4.6999 0.1040 38 1 0.2022 -4.4473 0.7298 39 1 -1.1752 -6.9668 -4.4156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707685857.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:46 Heat of formation + Delta-G solvation = -9.269906 kcal Electronic energy + Delta-G solvation = -19796.987546 eV Core-core repulsion = 16866.752801 eV Total energy + Delta-G solvation = -2930.234745 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.59667 -37.39568 -35.31143 -33.63194 -32.42934 -29.94749 -29.21320 -26.94678 -26.02039 -25.44399 -24.07272 -21.58480 -20.36638 -18.61622 -17.53478 -16.67566 -15.98038 -15.68742 -15.62705 -15.09870 -14.80548 -14.39000 -13.96736 -13.95733 -13.16245 -13.12726 -12.96488 -12.66379 -12.49722 -12.20528 -11.87711 -11.79968 -11.41902 -11.23426 -11.04579 -11.03609 -10.77361 -10.59701 -10.48502 -10.38616 -9.80555 -9.05906 -8.87852 -8.58999 -8.23325 -8.18946 -6.49533 -6.21684 -3.92027 2.94015 3.06038 3.23136 3.25666 3.28878 3.60297 3.97829 4.20612 4.66246 4.84273 4.90341 5.07988 5.13274 5.15263 5.18103 5.24900 5.37419 5.41615 5.51570 5.57996 5.65983 5.74981 5.81347 5.86928 5.92801 5.96901 6.09974 6.13072 6.22993 6.38105 6.52550 6.71512 6.76071 6.98030 7.08052 7.58896 7.65737 8.34779 8.63332 9.23635 10.85648 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028779 B = 0.004844 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.711186 B = 5778.632489 C = 6527.753074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.102 4.102 3 C -0.150 4.150 4 C 0.160 3.840 5 H 0.073 0.927 6 C 0.042 3.958 7 N -0.691 5.691 8 C 0.042 3.958 9 C 0.112 3.888 10 N -0.617 5.617 11 C 0.530 3.470 12 O -0.500 6.500 13 C -0.153 4.153 14 S -0.059 6.059 15 C -0.536 4.536 16 H 0.071 0.929 17 C 0.075 3.925 18 N -0.868 5.868 19 Si 0.917 3.083 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 H 0.029 0.971 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.119 0.881 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.342 0.658 33 H 0.036 0.964 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.128 11.323 14.596 19.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.121 4.121 3 C -0.208 4.208 4 C 0.057 3.943 5 H 0.091 0.909 6 C -0.088 4.088 7 N -0.322 5.322 8 C -0.088 4.088 9 C -0.012 4.012 10 N -0.353 5.353 11 C 0.318 3.682 12 O -0.375 6.375 13 C -0.303 4.303 14 S 0.168 5.832 15 C -0.684 4.684 16 H 0.089 0.911 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.744 3.256 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.199 1.199 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.136 0.864 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.160 0.840 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.295 12.195 12.753 18.423 hybrid contribution -0.786 -1.941 1.591 2.630 sum 4.508 10.255 14.344 18.200 Atomic orbital electron populations 1.21880 0.94691 1.01275 1.00200 1.21850 0.97117 0.94456 0.98672 1.21975 1.00465 0.96938 1.01429 1.21449 0.98529 0.79773 0.94581 0.90923 1.22601 0.98692 0.97101 0.90369 1.60263 1.64235 1.02778 1.04899 1.22322 0.97414 0.90159 0.98886 1.21795 1.01126 0.94347 0.83908 1.48142 1.65063 1.09324 1.12812 1.20211 0.76296 0.89806 0.81839 1.90682 1.49308 1.59966 1.37519 1.23611 1.04648 0.94425 1.07638 1.85336 1.81375 1.08034 1.08483 1.22823 1.49771 0.92581 1.03246 0.91071 1.24974 0.94679 0.99367 0.94453 1.70006 1.40364 1.36307 1.03642 0.86245 0.78635 0.83070 0.77677 1.19963 1.20802 1.19925 0.95193 0.92978 0.91928 0.86370 0.92520 0.93439 0.93081 0.93873 0.90000 0.84016 0.94528 0.89674 0.89042 0.90903 0.89442 0.89656 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.87 6.97 37.16 0.26 -1.61 16 2 C -0.10 -1.44 2.16 -90.62 -0.20 -1.64 16 3 C -0.15 -1.68 8.88 37.15 0.33 -1.35 16 4 C 0.16 2.09 2.81 -67.25 -0.19 1.90 16 5 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 6 C 0.04 0.46 5.31 -3.47 -0.02 0.44 16 7 N -0.69 -6.65 6.82 -113.24 -0.77 -7.42 16 8 C 0.04 0.41 6.70 -3.70 -0.02 0.39 16 9 C 0.11 1.31 6.49 -3.60 -0.02 1.29 16 10 N -0.62 -8.99 2.90 -164.66 -0.48 -9.47 16 11 C 0.53 9.80 6.57 -10.98 -0.07 9.73 16 12 O -0.50 -10.45 9.59 5.56 0.05 -10.40 16 13 C -0.15 -3.08 4.57 36.01 0.16 -2.91 16 14 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 15 C -0.54 -15.20 9.50 30.94 0.29 -14.90 16 16 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 17 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 18 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 19 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 H 0.03 0.39 6.81 -51.93 -0.35 0.03 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.06 1.12 5.49 -51.93 -0.28 0.83 16 26 H 0.12 2.06 5.72 -52.96 -0.30 1.76 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.46 7.04 -51.93 -0.37 0.10 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.51 6.24 -51.92 -0.32 0.19 16 31 H 0.08 0.77 7.12 -51.93 -0.37 0.40 16 32 H 0.34 2.58 8.90 -39.30 -0.35 2.23 16 33 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.05 6.04 -51.93 -0.31 0.74 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.67 8.13 -51.91 -0.42 1.25 16 38 H 0.09 1.61 7.49 -51.92 -0.39 1.22 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 311.52 15.07 4.69 4.69 Total: -1.00 -31.97 311.52 -8.55 -40.52 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.98 Total: 1.56 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 0.43 Total: -6.65 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -0.52 Total: -42.25 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.05 Total: -10.40 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.97 -8.55 -40.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707685857.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.252 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds