Wall clock time and date at job start Mon Mar 30 2020 05:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47213 * 2 1 4 4 C 1.53003 * 109.47037 * 120.00073 * 2 1 3 5 5 H 1.08996 * 109.78490 * 187.08685 * 4 2 1 6 6 C 1.53691 * 109.70164 * 307.83426 * 4 2 1 7 7 N 1.46900 * 109.25988 * 173.68850 * 6 4 2 8 8 C 1.46897 * 111.26953 * 296.75790 * 7 6 4 9 9 C 1.53240 * 109.34121 * 63.09803 * 8 7 6 10 10 N 1.47078 * 109.62799 * 66.60521 * 4 2 1 11 11 C 1.34778 * 120.88202 * 9.10290 * 10 4 2 12 12 O 1.21278 * 120.00043 * 355.48954 * 11 10 4 13 13 C 1.50700 * 120.00220 * 175.48458 * 11 10 4 14 14 S 1.80996 * 109.47333 * 180.02562 * 13 11 10 15 15 C 1.76206 * 100.00143 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99596 * 359.97438 * 15 14 13 17 17 C 1.38792 * 120.00000 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00218 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00105 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46922 * 59.99317 * 19 17 15 21 21 H 1.48501 * 109.47219 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46903 * 299.99663 * 19 17 15 23 23 H 1.08996 * 109.46970 * 310.54323 * 1 2 3 24 24 H 1.09004 * 109.46672 * 70.53770 * 1 2 3 25 25 H 1.08998 * 109.47178 * 190.53696 * 1 2 3 26 26 H 1.09002 * 109.46667 * 239.99923 * 2 1 3 27 27 H 1.09000 * 109.47069 * 294.86756 * 3 2 1 28 28 H 1.09003 * 109.47476 * 54.86706 * 3 2 1 29 29 H 1.09001 * 109.47196 * 174.86692 * 3 2 1 30 30 H 1.09007 * 109.65209 * 53.68248 * 6 4 2 31 31 H 1.09000 * 109.44267 * 293.56562 * 6 4 2 32 32 H 1.00892 * 111.00700 * 172.60515 * 7 6 4 33 33 H 1.09005 * 109.49166 * 303.14396 * 8 7 6 34 34 H 1.08995 * 109.49422 * 183.06279 * 8 7 6 35 35 H 1.09006 * 109.63099 * 186.46353 * 9 8 7 36 36 H 1.08994 * 109.62986 * 65.88266 * 9 8 7 37 37 H 1.09004 * 109.47514 * 300.00335 * 13 11 10 38 38 H 1.09002 * 109.47119 * 59.99900 * 13 11 10 39 39 H 0.96999 * 119.99945 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1226 -0.6160 1.3200 6 6 1.3760 -0.1238 2.4999 7 7 1.7544 -0.9185 3.6760 8 6 1.2561 -2.2964 3.5707 9 6 1.9095 -2.9817 2.3659 10 7 1.6861 -2.1469 1.1757 11 6 1.1758 -2.6756 0.0458 12 8 0.9264 -1.9590 -0.9002 13 6 0.9152 -4.1573 -0.0420 14 16 0.2359 -4.5549 -1.6719 15 6 0.0324 -6.2969 -1.5020 16 1 0.3078 -6.7852 -0.5789 17 6 -0.4809 -7.0415 -2.5548 18 7 -0.8162 -6.4464 -3.6800 19 14 -0.6960 -8.8884 -2.3749 20 1 -1.6228 -9.1715 -1.2497 21 1 -1.2584 -9.4459 -3.6312 22 1 0.6217 -9.5158 -2.1007 23 1 -0.3633 0.6680 0.7809 24 1 -0.3633 0.3424 -0.9690 25 1 -0.3633 -1.0103 0.1879 26 1 1.8933 -0.5139 -0.8900 27 1 1.7537 1.9290 -0.9324 28 1 1.6036 1.9822 0.8404 29 1 3.1262 1.4438 0.0919 30 1 0.2923 -0.1404 2.3830 31 1 1.7117 0.9047 2.6327 32 1 1.4324 -0.4817 4.5265 33 1 0.1742 -2.2829 3.4388 34 1 1.5053 -2.8437 4.4798 35 1 1.4599 -3.9631 2.2144 36 1 2.9798 -3.0894 2.5418 37 1 1.8493 -4.6999 0.1040 38 1 0.2022 -4.4473 0.7298 39 1 -1.1752 -6.9668 -4.4156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707685857.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:45 Heat of formation + Delta-G solvation = -32.023460 kcal Electronic energy + Delta-G solvation = -19797.974214 eV Core-core repulsion = 16866.752801 eV Total energy + Delta-G solvation = -2931.221413 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.82237 -38.56136 -36.39032 -34.74333 -34.58208 -31.02268 -30.60817 -28.06053 -27.72514 -26.96441 -25.05923 -22.61639 -21.54006 -20.13905 -19.25086 -17.79696 -17.14078 -16.94685 -16.88679 -16.87844 -16.09259 -15.84438 -15.28564 -15.02495 -14.56902 -14.52109 -14.29076 -13.98395 -13.66276 -13.37502 -13.15261 -12.96800 -12.90353 -12.86580 -12.62582 -12.34850 -12.10070 -11.75681 -11.69556 -11.60910 -11.55673 -11.13093 -10.26835 -9.97335 -9.80265 -9.24317 -8.66093 -8.35026 -6.12705 1.25753 1.42967 1.45392 1.55041 1.62451 2.10868 2.27670 2.99035 3.19367 3.25387 3.61518 3.89547 3.95263 4.07908 4.17690 4.22482 4.27084 4.32140 4.33753 4.46428 4.50671 4.65616 4.78525 4.80552 4.84594 4.89641 5.01809 5.04921 5.15149 5.32462 5.40463 5.41689 5.52535 5.77575 5.95339 6.18691 6.32632 6.49669 7.06206 7.24598 8.73863 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028779 B = 0.004844 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.711186 B = 5778.632489 C = 6527.753074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.100 4.100 3 C -0.142 4.142 4 C 0.157 3.843 5 H 0.080 0.920 6 C 0.051 3.949 7 N -0.688 5.688 8 C 0.047 3.953 9 C 0.103 3.897 10 N -0.608 5.608 11 C 0.526 3.474 12 O -0.532 6.532 13 C -0.126 4.126 14 S -0.144 6.144 15 C -0.549 4.549 16 H 0.080 0.920 17 C 0.016 3.984 18 N -0.911 5.911 19 Si 0.997 3.003 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.262 1.262 23 H 0.054 0.946 24 H 0.033 0.967 25 H 0.031 0.969 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.032 0.968 31 H 0.104 0.896 32 H 0.359 0.641 33 H 0.026 0.974 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.999 11.264 17.556 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.119 4.119 3 C -0.200 4.200 4 C 0.055 3.945 5 H 0.098 0.902 6 C -0.080 4.080 7 N -0.321 5.321 8 C -0.083 4.083 9 C -0.020 4.020 10 N -0.343 5.343 11 C 0.314 3.686 12 O -0.410 6.410 13 C -0.278 4.278 14 S 0.084 5.916 15 C -0.696 4.696 16 H 0.098 0.902 17 C -0.189 4.189 18 N -0.548 5.548 19 Si 0.818 3.182 20 H -0.187 1.187 21 H -0.203 1.203 22 H -0.187 1.187 23 H 0.073 0.927 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.122 0.878 32 H 0.179 0.821 33 H 0.045 0.955 34 H 0.132 0.868 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.184 12.157 15.773 20.852 hybrid contribution -1.002 -1.835 0.749 2.221 sum 5.182 10.322 16.522 20.158 Atomic orbital electron populations 1.21761 0.95710 0.99761 0.99901 1.21650 0.96150 0.96302 0.97771 1.21892 1.01249 0.94701 1.02163 1.21594 0.99077 0.78601 0.95274 0.90181 1.22493 0.97695 0.98164 0.89605 1.60234 1.64097 1.02599 1.05146 1.22309 0.96539 0.90515 0.98924 1.22089 1.02289 0.94224 0.83402 1.48151 1.63358 1.10500 1.12295 1.19955 0.77013 0.88860 0.82781 1.90712 1.50949 1.60241 1.39067 1.23428 1.04874 0.96313 1.03136 1.85479 1.82600 1.08894 1.14668 1.23171 1.49848 0.92793 1.03825 0.90160 1.26095 0.93959 1.05032 0.93842 1.70173 1.41403 1.38513 1.04675 0.85035 0.79163 0.75975 0.78022 1.18660 1.20336 1.18664 0.92738 0.94828 0.94986 0.90281 0.92956 0.91309 0.91877 0.94991 0.87762 0.82146 0.95532 0.86848 0.89091 0.89530 0.88196 0.88256 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.52 6.97 71.98 0.50 -3.02 16 2 C -0.10 -2.80 2.16 -10.79 -0.02 -2.82 16 3 C -0.14 -2.93 8.88 71.98 0.64 -2.29 16 4 C 0.16 3.85 2.81 45.11 0.13 3.98 16 5 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 6 C 0.05 0.94 5.31 86.54 0.46 1.40 16 7 N -0.69 -10.72 6.82 -512.20 -3.49 -14.22 16 8 C 0.05 0.78 6.70 86.38 0.58 1.35 16 9 C 0.10 2.16 6.49 86.35 0.56 2.72 16 10 N -0.61 -17.16 2.90 -793.25 -2.30 -19.46 16 11 C 0.53 19.84 6.57 87.66 0.58 20.41 16 12 O -0.53 -23.39 9.59 -3.02 -0.03 -23.42 16 13 C -0.13 -5.15 4.57 71.24 0.33 -4.83 16 14 S -0.14 -8.01 20.57 -56.49 -1.16 -9.17 16 15 C -0.55 -31.54 9.50 67.95 0.65 -30.89 16 16 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 17 C 0.02 0.89 5.49 84.86 0.47 1.36 16 18 N -0.91 -56.21 13.22 21.65 0.29 -55.92 16 19 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 20 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 23 H 0.05 1.36 6.81 -2.39 -0.02 1.35 16 24 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.03 1.17 5.49 -2.39 -0.01 1.16 16 26 H 0.08 2.89 5.72 -18.81 -0.11 2.78 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.13 7.04 -2.39 -0.02 1.11 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.03 0.68 6.24 -2.38 -0.01 0.67 16 31 H 0.10 1.51 7.12 -2.39 -0.02 1.50 16 32 H 0.36 3.94 8.90 -89.70 -0.80 3.14 16 33 H 0.03 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.92 6.04 -2.38 -0.01 1.91 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.10 3.79 8.13 -2.39 -0.02 3.77 16 38 H 0.10 3.73 7.49 -2.39 -0.02 3.72 16 39 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -72.32 311.52 0.34 -71.98 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.16 Total: 17.15 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 4.86 Total: -12.64 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -5.51 Total: -89.60 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.03 Total: -23.42 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.16 Total: -9.17 kcal Total: -72.32 0.34 -71.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707685857.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.953 kcal (2) G-P(sol) polarization free energy of solvation -72.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds