Wall clock time and date at job start Mon Mar 30 2020 04:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 120.00359 * 2 1 4 4 H 1.48503 * 109.47262 * 239.99970 * 3 2 1 5 5 H 1.48505 * 109.46991 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47207 * 119.99868 * 3 2 1 7 7 C 1.38801 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00006 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99871 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99859 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46975 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00031 * 4.98133 * 11 10 9 13 13 N 1.34775 * 120.00006 * 184.98866 * 11 10 9 14 14 C 1.46061 * 120.18945 * 175.02383 * 13 11 10 15 15 C 1.53402 * 110.11762 * 66.95466 * 14 13 11 16 16 C 1.53434 * 108.66896 * 43.56388 * 15 14 13 17 17 C 1.53476 * 109.13042 * 72.19522 * 16 15 14 18 18 C 1.52463 * 109.81688 * 283.14422 * 17 16 15 19 19 C 1.53492 * 109.13460 * 316.08575 * 18 17 16 20 20 H 1.09001 * 109.80858 * 354.42062 * 19 18 17 21 21 N 1.46901 * 109.63626 * 233.91141 * 19 18 17 22 22 C 1.47145 * 120.18586 * 355.04257 * 13 11 10 23 23 H 0.97005 * 119.99399 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47196 * 59.99974 * 10 9 7 25 25 H 1.09000 * 109.47258 * 300.00196 * 10 9 7 26 26 H 1.08998 * 109.36139 * 306.75326 * 14 13 11 27 27 H 1.09001 * 109.25761 * 187.08655 * 14 13 11 28 28 H 1.09001 * 109.63105 * 163.37105 * 15 14 13 29 29 H 1.09005 * 109.63135 * 283.76035 * 15 14 13 30 30 H 1.08997 * 109.49598 * 192.39312 * 16 15 14 31 31 H 1.08997 * 109.49526 * 312.48809 * 16 15 14 32 32 H 1.08999 * 109.34989 * 163.04823 * 17 16 15 33 33 H 1.08997 * 109.34587 * 43.23625 * 17 16 15 34 34 H 1.08999 * 109.52646 * 196.18478 * 18 17 16 35 35 H 1.08999 * 109.58273 * 76.01293 * 18 17 16 36 36 H 1.00895 * 111.00037 * 181.03529 * 21 19 18 37 37 H 1.00911 * 110.99861 * 304.98713 * 21 19 18 38 38 H 1.08996 * 109.84588 * 11.61648 * 22 13 11 39 39 H 1.09002 * 109.84733 * 132.60828 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5157 -3.8915 0.0013 11 6 1.9871 -5.3028 0.0018 12 8 0.7945 -5.5037 -0.0888 13 7 2.8397 -6.3416 0.1029 14 6 2.3267 -7.7048 0.2131 15 6 1.6319 -8.1140 -1.0919 16 6 2.4970 -7.6563 -2.2735 17 6 3.7463 -8.5440 -2.3558 18 6 4.7466 -8.1294 -1.2825 19 6 4.8396 -6.5977 -1.2462 20 1 4.2480 -6.1724 -2.0569 21 7 6.2421 -6.1848 -1.3893 22 6 4.2926 -6.1090 0.1035 23 1 -0.4849 0.8401 -0.0004 24 1 3.1250 -3.7311 0.8908 25 1 3.1237 -3.7319 -0.8892 26 1 1.6123 -7.7568 1.0347 27 1 3.1547 -8.3856 0.4105 28 1 1.5159 -9.1975 -1.1208 29 1 0.6523 -7.6393 -1.1497 30 1 1.9242 -7.7387 -3.1972 31 1 2.7989 -6.6198 -2.1233 32 1 4.2032 -8.4343 -3.3393 33 1 3.4605 -9.5847 -2.2026 34 1 5.7255 -8.5485 -1.5154 35 1 4.4144 -8.4973 -0.3118 36 1 6.3289 -5.1803 -1.3512 37 1 6.8217 -6.6246 -0.6901 38 1 4.4970 -5.0450 0.2223 39 1 4.7567 -6.6688 0.9156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709050771.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:16 Heat of formation + Delta-G solvation = -28.285673 kcal Electronic energy + Delta-G solvation = -19759.476325 eV Core-core repulsion = 16828.416995 eV Total energy + Delta-G solvation = -2931.059330 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.45313 -37.73676 -34.73845 -34.16934 -32.44211 -30.69747 -29.26324 -26.90679 -26.63042 -25.46156 -23.11682 -21.66755 -20.12179 -18.74091 -17.61060 -16.70156 -16.47897 -15.82748 -15.45903 -15.34485 -14.81799 -14.63130 -14.15008 -13.88090 -13.50924 -13.24948 -12.87513 -12.60819 -12.47398 -12.03217 -11.86963 -11.73982 -11.48146 -11.36690 -11.05740 -11.05139 -10.78622 -10.74645 -10.31796 -10.05002 -9.82739 -9.42220 -9.16784 -9.07148 -8.29104 -8.23670 -6.51586 -6.22847 -3.93680 2.92929 3.05078 3.22211 3.24726 3.28021 3.57584 4.19002 4.40003 4.47312 4.64697 4.78785 4.95952 5.01754 5.02089 5.12112 5.13461 5.17982 5.35409 5.40937 5.54297 5.57883 5.66352 5.75825 5.82089 5.85240 5.90770 6.05223 6.08326 6.13439 6.17000 6.35747 6.41950 6.71238 6.94820 7.23089 7.55463 7.57839 8.33216 8.58224 9.22242 10.84507 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026664 B = 0.004879 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.871926 B = 5736.983833 C = 6390.638910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.071 0.929 9 S -0.059 6.059 10 C -0.151 4.151 11 C 0.532 3.468 12 O -0.510 6.510 13 N -0.614 5.614 14 C 0.115 3.885 15 C -0.136 4.136 16 C -0.130 4.130 17 C -0.115 4.115 18 C -0.123 4.123 19 C 0.064 3.936 20 H 0.099 0.901 21 N -0.840 5.840 22 C 0.074 3.926 23 H 0.269 0.731 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.343 0.657 37 H 0.337 0.663 38 H 0.087 0.913 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.448 -16.420 -0.957 20.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.089 0.911 9 S 0.168 5.832 10 C -0.302 4.302 11 C 0.320 3.680 12 O -0.383 6.383 13 N -0.350 5.350 14 C -0.008 4.008 15 C -0.174 4.174 16 C -0.167 4.167 17 C -0.152 4.152 18 C -0.160 4.160 19 C -0.048 4.048 20 H 0.117 0.883 21 N -0.369 5.369 22 C -0.052 4.052 23 H 0.079 0.921 24 H 0.103 0.897 25 H 0.105 0.895 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.105 0.895 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.452 -16.949 -1.727 19.483 hybrid contribution 1.949 1.703 1.023 2.783 sum 11.401 -15.246 -0.704 19.050 Atomic orbital electron populations 1.70010 1.05957 1.27577 1.46711 1.24982 0.95014 0.98992 0.94493 0.86235 0.79264 0.81279 0.78795 1.19913 1.20773 1.19955 1.22811 0.94805 0.91691 1.59159 0.91077 1.85400 1.04907 0.96265 1.96675 1.23563 1.06469 0.95781 1.04362 1.20288 0.86248 0.86084 0.75392 1.90684 1.15375 1.85206 1.47045 1.47926 1.05746 1.06317 1.74990 1.21573 0.98553 0.82621 0.98036 1.22099 1.00446 1.00335 0.94533 1.21990 0.95805 1.00901 0.98042 1.21557 0.95697 0.99232 0.98746 1.21960 0.99847 0.94366 0.99822 1.22545 0.89110 0.96295 0.96894 0.88314 1.59095 1.07562 1.13672 1.56561 1.22959 0.81209 1.02514 0.98504 0.92112 0.89665 0.89495 0.91762 0.89969 0.91581 0.90372 0.92330 0.90413 0.92134 0.92119 0.91203 0.91211 0.84352 0.85077 0.89458 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.13 13.22 55.49 0.73 -25.39 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 7 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.06 -1.60 20.58 -107.50 -2.21 -3.81 16 10 C -0.15 -3.05 4.51 36.00 0.16 -2.89 16 11 C 0.53 9.96 6.91 -10.99 -0.08 9.88 16 12 O -0.51 -11.41 14.61 5.56 0.08 -11.33 16 13 N -0.61 -8.40 1.72 -172.89 -0.30 -8.69 16 14 C 0.11 1.37 5.15 -4.07 -0.02 1.35 16 15 C -0.14 -1.64 5.48 -26.30 -0.14 -1.79 16 16 C -0.13 -1.54 5.48 -26.26 -0.14 -1.69 16 17 C -0.11 -1.08 5.67 -26.76 -0.15 -1.24 16 18 C -0.12 -1.07 5.21 -26.75 -0.14 -1.21 16 19 C 0.06 0.63 2.88 -67.14 -0.19 0.43 16 20 H 0.10 1.21 5.47 -51.93 -0.28 0.93 16 21 N -0.84 -7.22 9.12 -4.18 -0.04 -7.26 16 22 C 0.07 0.78 5.46 -3.37 -0.02 0.76 16 23 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.09 1.60 7.56 -51.92 -0.39 1.21 16 25 H 0.09 1.64 8.04 -51.92 -0.42 1.23 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.76 5.05 -51.93 -0.26 0.49 16 28 H 0.07 0.65 7.89 -51.93 -0.41 0.24 16 29 H 0.08 1.19 7.11 -51.93 -0.37 0.82 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.08 3.70 -51.93 -0.19 0.89 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.51 7.85 -51.93 -0.41 0.10 16 34 H 0.07 0.59 7.88 -51.93 -0.41 0.18 16 35 H 0.07 0.57 4.49 -51.93 -0.23 0.33 16 36 H 0.34 2.84 9.04 -39.29 -0.36 2.49 16 37 H 0.34 2.30 8.97 -39.29 -0.35 1.95 16 38 H 0.09 0.97 5.93 -51.93 -0.31 0.66 16 39 H 0.07 0.61 7.97 -51.93 -0.41 0.20 16 LS Contribution 309.36 15.07 4.66 4.66 Total: -1.00 -32.95 309.36 -8.24 -41.19 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.62 Total: 3.63 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -0.53 Total: -9.27 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.40 Total: -41.35 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.95 -8.24 -41.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709050771.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.903 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds