Wall clock time and date at job start Mon Mar 30 2020 04:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 120.00359 * 2 1 4 4 H 1.48503 * 109.47262 * 239.99970 * 3 2 1 5 5 H 1.48505 * 109.46991 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47207 * 119.99868 * 3 2 1 7 7 C 1.38801 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00006 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99871 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99859 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46975 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00031 * 4.98133 * 11 10 9 13 13 N 1.34775 * 120.00006 * 184.98866 * 11 10 9 14 14 C 1.46061 * 120.18945 * 175.02383 * 13 11 10 15 15 C 1.53402 * 110.11762 * 66.95466 * 14 13 11 16 16 C 1.53434 * 108.66896 * 43.56388 * 15 14 13 17 17 C 1.53476 * 109.13042 * 72.19522 * 16 15 14 18 18 C 1.52463 * 109.81688 * 283.14422 * 17 16 15 19 19 C 1.53492 * 109.13460 * 316.08575 * 18 17 16 20 20 H 1.09001 * 109.80858 * 354.42062 * 19 18 17 21 21 N 1.46901 * 109.63626 * 233.91141 * 19 18 17 22 22 C 1.47145 * 120.18586 * 355.04257 * 13 11 10 23 23 H 0.97005 * 119.99399 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47196 * 59.99974 * 10 9 7 25 25 H 1.09000 * 109.47258 * 300.00196 * 10 9 7 26 26 H 1.08998 * 109.36139 * 306.75326 * 14 13 11 27 27 H 1.09001 * 109.25761 * 187.08655 * 14 13 11 28 28 H 1.09001 * 109.63105 * 163.37105 * 15 14 13 29 29 H 1.09005 * 109.63135 * 283.76035 * 15 14 13 30 30 H 1.08997 * 109.49598 * 192.39312 * 16 15 14 31 31 H 1.08997 * 109.49526 * 312.48809 * 16 15 14 32 32 H 1.08999 * 109.34989 * 163.04823 * 17 16 15 33 33 H 1.08997 * 109.34587 * 43.23625 * 17 16 15 34 34 H 1.08999 * 109.52646 * 196.18478 * 18 17 16 35 35 H 1.08999 * 109.58273 * 76.01293 * 18 17 16 36 36 H 1.00895 * 111.00037 * 181.03529 * 21 19 18 37 37 H 1.00911 * 110.99861 * 304.98713 * 21 19 18 38 38 H 1.08996 * 109.84588 * 11.61648 * 22 13 11 39 39 H 1.09002 * 109.84733 * 132.60828 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5157 -3.8915 0.0013 11 6 1.9871 -5.3028 0.0018 12 8 0.7945 -5.5037 -0.0888 13 7 2.8397 -6.3416 0.1029 14 6 2.3267 -7.7048 0.2131 15 6 1.6319 -8.1140 -1.0919 16 6 2.4970 -7.6563 -2.2735 17 6 3.7463 -8.5440 -2.3558 18 6 4.7466 -8.1294 -1.2825 19 6 4.8396 -6.5977 -1.2462 20 1 4.2480 -6.1724 -2.0569 21 7 6.2421 -6.1848 -1.3893 22 6 4.2926 -6.1090 0.1035 23 1 -0.4849 0.8401 -0.0004 24 1 3.1250 -3.7311 0.8908 25 1 3.1237 -3.7319 -0.8892 26 1 1.6123 -7.7568 1.0347 27 1 3.1547 -8.3856 0.4105 28 1 1.5159 -9.1975 -1.1208 29 1 0.6523 -7.6393 -1.1497 30 1 1.9242 -7.7387 -3.1972 31 1 2.7989 -6.6198 -2.1233 32 1 4.2032 -8.4343 -3.3393 33 1 3.4605 -9.5847 -2.2026 34 1 5.7255 -8.5485 -1.5154 35 1 4.4144 -8.4973 -0.3118 36 1 6.3289 -5.1803 -1.3512 37 1 6.8217 -6.6246 -0.6901 38 1 4.4970 -5.0450 0.2223 39 1 4.7567 -6.6688 0.9156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709050771.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:15 Heat of formation + Delta-G solvation = -51.417005 kcal Electronic energy + Delta-G solvation = -19760.479375 eV Core-core repulsion = 16828.416995 eV Total energy + Delta-G solvation = -2932.062380 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60171 -38.95587 -35.60897 -35.31339 -34.59979 -31.77510 -30.50945 -27.92591 -27.78804 -27.43979 -24.07021 -22.64363 -21.07112 -20.22153 -19.31842 -17.94894 -17.53991 -17.05337 -16.89177 -16.43904 -16.27336 -15.85682 -15.70998 -14.95227 -14.79548 -14.48840 -14.36299 -13.85546 -13.46041 -13.29695 -13.18941 -12.95061 -12.87963 -12.66417 -12.58226 -12.35402 -12.19635 -11.75419 -11.64817 -11.26449 -11.14334 -10.97768 -10.64718 -10.29442 -10.20695 -9.26792 -8.69204 -8.35985 -6.14748 1.24128 1.42760 1.44564 1.54074 1.58882 2.10192 2.26274 2.98173 3.22163 3.58053 3.68648 3.78465 3.88563 4.04313 4.07071 4.15628 4.19738 4.26783 4.32124 4.38628 4.50925 4.58640 4.68709 4.74636 4.93609 4.99276 5.11369 5.21834 5.26887 5.30343 5.39193 5.43398 5.51055 5.67426 6.17398 6.19856 6.34767 6.64337 7.04973 7.17455 8.73068 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026664 B = 0.004879 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.871926 B = 5736.983833 C = 6390.638910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.150 6.150 10 C -0.123 4.123 11 C 0.530 3.470 12 O -0.557 6.557 13 N -0.597 5.597 14 C 0.111 3.889 15 C -0.132 4.132 16 C -0.130 4.130 17 C -0.107 4.107 18 C -0.117 4.117 19 C 0.071 3.929 20 H 0.072 0.928 21 N -0.840 5.840 22 C 0.069 3.931 23 H 0.271 0.729 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.052 0.948 27 H 0.124 0.876 28 H 0.095 0.905 29 H 0.037 0.963 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.345 0.655 37 H 0.351 0.649 38 H 0.082 0.918 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.701 -17.547 -0.527 22.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.077 5.923 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.435 6.435 13 N -0.330 5.330 14 C -0.010 4.010 15 C -0.170 4.170 16 C -0.167 4.167 17 C -0.145 4.145 18 C -0.154 4.154 19 C -0.041 4.041 20 H 0.090 0.910 21 N -0.370 5.370 22 C -0.056 4.056 23 H 0.080 0.920 24 H 0.121 0.879 25 H 0.118 0.882 26 H 0.071 0.929 27 H 0.141 0.859 28 H 0.113 0.887 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.158 0.842 37 H 0.165 0.835 38 H 0.100 0.900 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.767 -18.118 -1.291 22.202 hybrid contribution 0.999 1.925 0.864 2.334 sum 13.766 -16.193 -0.427 21.258 Atomic orbital electron populations 1.70183 1.08015 1.28700 1.47884 1.26125 0.95941 1.03296 0.93632 0.85013 0.77840 0.75671 0.79539 1.18662 1.20355 1.18533 1.23153 0.95270 0.91983 1.59115 0.90014 1.85578 1.10495 0.99196 1.96995 1.23370 1.03361 0.95012 1.05726 1.20068 0.86085 0.86512 0.75629 1.90672 1.17399 1.85726 1.49704 1.47871 1.06687 1.05891 1.72593 1.21810 0.99843 0.81912 0.97484 1.22055 0.98470 1.01700 0.94817 1.21963 0.96986 1.00342 0.97449 1.21503 0.94395 0.99516 0.99095 1.21937 1.00224 0.93186 1.00050 1.22358 0.89419 0.97140 0.95231 0.90995 1.59071 1.06793 1.14045 1.57140 1.23284 0.78949 1.03024 1.00321 0.91968 0.87852 0.88230 0.92926 0.85888 0.88710 0.94368 0.93319 0.92637 0.92394 0.90258 0.89979 0.89940 0.84158 0.83542 0.89976 0.87855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.33 13.22 21.65 0.29 -56.04 16 2 C 0.01 0.85 5.49 84.86 0.47 1.32 16 3 Si 1.00 43.55 29.55 68.60 2.03 45.58 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.55 -31.42 9.50 67.95 0.65 -30.77 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 9 S -0.15 -8.43 20.58 -56.49 -1.16 -9.59 16 10 C -0.12 -5.02 4.51 71.24 0.32 -4.70 16 11 C 0.53 20.10 6.91 87.66 0.61 20.70 16 12 O -0.56 -26.16 14.61 -3.03 -0.04 -26.20 16 13 N -0.60 -15.54 1.72 -819.31 -1.41 -16.95 16 14 C 0.11 2.44 5.15 86.60 0.45 2.89 16 15 C -0.13 -3.10 5.48 30.87 0.17 -2.93 16 16 C -0.13 -3.00 5.48 30.90 0.17 -2.83 16 17 C -0.11 -1.73 5.67 30.58 0.17 -1.56 16 18 C -0.12 -1.59 5.21 30.58 0.16 -1.43 16 19 C 0.07 1.21 2.88 45.29 0.13 1.34 16 20 H 0.07 1.68 5.47 -2.39 -0.01 1.67 16 21 N -0.84 -11.96 9.12 -167.13 -1.52 -13.49 16 22 C 0.07 1.26 5.46 86.46 0.47 1.73 16 23 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 24 H 0.10 3.80 7.56 -2.40 -0.02 3.78 16 25 H 0.10 3.76 8.04 -2.39 -0.02 3.74 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.12 1.72 5.05 -2.39 -0.01 1.71 16 28 H 0.09 1.66 7.89 -2.39 -0.02 1.64 16 29 H 0.04 1.21 7.11 -2.38 -0.02 1.19 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.54 3.70 -2.39 -0.01 1.53 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.02 7.85 -2.39 -0.02 1.01 16 34 H 0.08 1.00 7.88 -2.39 -0.02 0.98 16 35 H 0.08 0.91 4.49 -2.39 -0.01 0.90 16 36 H 0.35 4.88 9.04 -89.70 -0.81 4.07 16 37 H 0.35 3.44 8.97 -89.69 -0.80 2.64 16 38 H 0.08 1.62 5.93 -2.39 -0.01 1.60 16 39 H 0.10 1.31 7.97 -2.39 -0.02 1.29 16 Total: -1.00 -75.35 309.36 1.39 -73.95 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -0.54 Total: 18.99 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 3.76 Total: -16.24 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -2.65 Total: -86.48 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.04 Total: -26.20 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.59 kcal Total: -75.35 1.39 -73.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709050771.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.537 kcal (2) G-P(sol) polarization free energy of solvation -75.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds