Wall clock time and date at job start Mon Mar 30 2020 04:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35326 * 126.04229 * 2 1 4 4 N 1.34948 * 107.74170 * 180.16103 * 3 2 1 5 5 H 0.96999 * 126.03026 * 179.83351 * 4 3 2 6 6 N 1.40077 * 107.92861 * 359.57678 * 4 3 2 7 7 C 1.30839 * 108.20706 * 0.26299 * 6 4 3 8 8 C 1.50703 * 125.89920 * 179.97438 * 7 6 4 9 9 N 1.46491 * 109.47029 * 90.02230 * 8 7 6 10 10 C 1.39857 * 119.99806 * 179.97438 * 9 8 7 11 11 C 1.39596 * 119.83770 * 359.72993 * 10 9 8 12 12 C 1.38070 * 120.54819 * 179.71653 * 11 10 9 13 13 C 1.38736 * 120.21762 * 0.55627 * 12 11 10 14 14 N 1.38859 * 120.16365 * 179.74480 * 13 12 11 15 15 C 1.41565 * 119.67395 * 359.71961 * 13 12 11 16 16 C 1.41024 * 120.26510 * 179.97438 * 15 13 12 17 17 H 1.07996 * 120.00470 * 25.57910 * 16 15 13 18 18 C 1.39888 * 119.99953 * 205.57230 * 16 15 13 19 19 N 1.30903 * 120.00015 * 15.35250 * 18 16 15 20 20 Si 1.86798 * 120.00027 * 195.34757 * 18 16 15 21 21 H 1.48499 * 109.47273 * 60.00549 * 20 18 16 22 22 H 1.48503 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47382 * 300.00127 * 20 18 16 24 24 C 1.38006 * 119.83749 * 180.02562 * 10 9 8 25 25 H 1.09003 * 109.47196 * 270.31283 * 1 2 3 26 26 H 1.09006 * 109.46953 * 30.30726 * 1 2 3 27 27 H 1.09000 * 109.47565 * 150.30882 * 1 2 3 28 28 H 1.07994 * 126.12253 * 0.02562 * 3 2 1 29 29 H 1.08996 * 109.47134 * 210.02295 * 8 7 6 30 30 H 1.09001 * 109.46815 * 330.02209 * 8 7 6 31 31 H 0.96998 * 120.00472 * 0.02562 * 9 8 7 32 32 H 1.07994 * 119.72935 * 359.97438 * 11 10 9 33 33 H 1.07995 * 119.88991 * 180.27246 * 12 11 10 34 34 H 0.97000 * 120.00426 * 179.97438 * 14 13 12 35 35 H 0.97006 * 120.00076 * 359.97317 * 14 13 12 36 36 H 0.96998 * 119.99953 * 179.97438 * 19 18 16 37 37 H 1.08004 * 120.11893 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0942 0.0000 4 7 3.5844 0.6705 -0.0036 5 1 4.3724 1.2361 -0.0067 6 7 3.5754 -0.7302 0.0039 7 6 2.3299 -1.1310 0.0061 8 6 1.8626 -2.5637 0.0133 9 7 1.7109 -3.0209 1.3967 10 6 1.2840 -4.3267 1.6588 11 6 0.9979 -5.1897 0.5995 12 6 0.5811 -6.4835 0.8414 13 6 0.4308 -6.9367 2.1440 14 7 0.0063 -8.2365 2.3859 15 6 0.7127 -6.0676 3.2253 16 6 0.5637 -6.5151 4.5543 17 1 0.6438 -7.5677 4.7820 18 6 0.3121 -5.5954 5.5779 19 7 -0.0809 -4.3815 5.2852 20 14 0.5368 -6.0995 7.3625 21 1 1.9462 -6.5097 7.5873 22 1 0.2078 -4.9522 8.2461 23 1 -0.3654 -7.2374 7.6729 24 6 1.1417 -4.7538 2.9634 25 1 -0.3634 0.0056 1.0277 26 1 -0.3633 0.8873 -0.5186 27 1 -0.3634 -0.8927 -0.5090 28 1 1.9724 2.1223 0.0004 29 1 0.9040 -2.6358 -0.5004 30 1 2.5962 -3.1877 -0.4972 31 1 1.9058 -2.4178 2.1310 32 1 1.1076 -4.8438 -0.4176 33 1 0.3669 -7.1435 0.0138 34 1 -0.0976 -8.5511 3.2976 35 1 -0.1862 -8.8301 1.6432 36 1 -0.2557 -3.7440 5.9950 37 1 1.3597 -4.0819 3.7804 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716754526.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:26 Heat of formation + Delta-G solvation = 95.104567 kcal Electronic energy + Delta-G solvation = -19914.053318 eV Core-core repulsion = 16885.193390 eV Total energy + Delta-G solvation = -3028.859928 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.21337 -37.86111 -35.42835 -33.41030 -32.88089 -31.87138 -30.70238 -29.34574 -27.37330 -26.31702 -24.92724 -24.44700 -21.35150 -20.75589 -19.66396 -19.27761 -17.73849 -17.03477 -16.04291 -15.41832 -15.12062 -14.79831 -14.61064 -14.38816 -13.90939 -13.09197 -13.02434 -12.79908 -12.64171 -12.38994 -12.23171 -11.86823 -11.67883 -11.55498 -11.28527 -11.05927 -10.96222 -10.52662 -10.34048 -9.89406 -9.67978 -9.48955 -9.23807 -9.00386 -8.40930 -7.70606 -7.16189 -6.55539 -5.47869 -4.01391 1.86580 2.68911 2.86851 2.96811 3.15548 3.18679 3.36658 3.54116 4.07369 4.62084 4.77312 4.82770 4.88359 5.31768 5.36174 5.48057 5.64542 5.83681 5.94459 6.03221 6.08556 6.18617 6.26508 6.42297 6.66714 6.71593 7.16725 7.20356 7.26009 7.37711 7.54687 7.70695 7.75115 7.94160 8.06414 8.17881 8.51123 8.80370 8.95572 8.99084 9.05931 9.31459 9.39751 10.42733 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019029 B = 0.004696 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.053863 B = 5961.627169 C = 6901.778628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.222 4.222 3 C 0.046 3.954 4 N -0.481 5.481 5 H 0.437 0.563 6 N -0.279 5.279 7 C 0.075 3.925 8 C 0.219 3.781 9 N -0.754 5.754 10 C 0.180 3.820 11 C -0.255 4.255 12 C -0.152 4.152 13 C 0.084 3.916 14 N -0.889 5.889 15 C 0.095 3.905 16 C -0.464 4.464 17 H 0.070 0.930 18 C 0.076 3.924 19 N -0.800 5.800 20 Si 0.902 3.098 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.269 1.269 24 C -0.199 4.199 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.174 0.826 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.389 0.611 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.388 0.612 35 H 0.374 0.626 36 H 0.275 0.725 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 9.482 -7.462 12.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.233 4.233 3 C -0.101 4.101 4 N -0.189 5.189 5 H 0.281 0.719 6 N -0.103 5.103 7 C -0.093 4.093 8 C 0.092 3.908 9 N -0.390 5.390 10 C 0.082 3.918 11 C -0.279 4.279 12 C -0.176 4.176 13 C -0.016 4.016 14 N -0.432 5.432 15 C 0.090 3.910 16 C -0.495 4.495 17 H 0.088 0.912 18 C -0.139 4.139 19 N -0.427 5.427 20 Si 0.727 3.273 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.194 1.194 24 C -0.224 4.224 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.191 0.809 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.222 0.778 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.216 0.784 35 H 0.199 0.801 36 H 0.085 0.915 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.152 9.425 -7.552 12.481 hybrid contribution -0.379 0.513 1.159 1.323 sum 2.773 9.938 -6.393 12.137 Atomic orbital electron populations 1.20087 0.89071 1.02004 1.02154 1.20137 0.97473 0.91251 1.14485 1.22326 0.84691 0.99822 1.03231 1.46220 1.07074 1.05760 1.59811 0.71919 1.77356 1.20676 0.88473 1.23772 1.22464 0.90120 0.97006 0.99698 1.19233 0.99346 0.85357 0.86859 1.44179 1.78729 1.12194 1.03924 1.17483 0.97309 0.83191 0.93865 1.19611 1.18213 0.94850 0.95244 1.19693 1.08664 0.95883 0.93395 1.17861 1.04119 0.86667 0.92998 1.41806 1.80970 1.11887 1.08530 1.16955 0.91845 0.90946 0.91265 1.19098 1.44560 0.94256 0.91596 0.91190 1.25736 0.92779 0.94625 1.00799 1.69870 1.33266 1.05083 1.34516 0.86492 0.79671 0.78786 0.82349 1.19207 1.20666 1.19381 1.20516 1.10800 0.98260 0.92784 0.91628 0.92422 0.91440 0.80917 0.91489 0.92164 0.77786 0.89636 0.89769 0.78383 0.80137 0.91468 0.86322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.18 36.00 0.37 -0.51 16 2 C -0.22 -2.94 6.10 -105.05 -0.64 -3.58 16 3 C 0.05 0.48 11.90 -17.22 -0.20 0.28 16 4 N -0.48 -5.43 7.36 30.45 0.22 -5.20 16 5 H 0.44 3.32 8.96 -182.62 -1.64 1.68 16 6 N -0.28 -4.35 12.70 33.67 0.43 -3.92 16 7 C 0.07 1.17 6.59 -82.40 -0.54 0.63 16 8 C 0.22 3.75 5.28 -5.20 -0.03 3.73 16 9 N -0.75 -15.25 5.73 -59.82 -0.34 -15.59 16 10 C 0.18 4.27 6.64 -83.77 -0.56 3.72 16 11 C -0.26 -5.86 9.31 -39.14 -0.36 -6.23 16 12 C -0.15 -3.52 9.86 -39.46 -0.39 -3.91 16 13 C 0.08 2.07 6.79 -83.23 -0.56 1.51 16 14 N -0.89 -18.44 8.98 32.75 0.29 -18.15 16 15 C 0.10 2.56 5.58 -106.65 -0.60 1.96 16 16 C -0.46 -12.33 8.50 -37.91 -0.32 -12.66 16 17 H 0.07 1.77 6.67 -52.49 -0.35 1.42 16 18 C 0.08 1.95 5.18 -17.33 -0.09 1.86 16 19 N -0.80 -21.17 10.88 55.55 0.60 -20.57 16 20 Si 0.90 19.21 29.59 -169.99 -5.03 14.18 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 C -0.20 -5.26 8.50 -38.75 -0.33 -5.59 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.83 7.26 -51.93 -0.38 0.45 16 28 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.07 1.10 7.04 -51.93 -0.37 0.73 16 30 H 0.06 1.06 7.95 -51.93 -0.41 0.65 16 31 H 0.39 7.90 8.47 -40.82 -0.35 7.55 16 32 H 0.09 1.77 6.69 -52.49 -0.35 1.42 16 33 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 34 H 0.39 7.90 7.04 -40.82 -0.29 7.61 16 35 H 0.37 6.56 8.83 -40.82 -0.36 6.20 16 36 H 0.27 6.72 8.30 -40.82 -0.34 6.38 16 37 H 0.12 3.28 6.14 -52.48 -0.32 2.96 16 LS Contribution 312.71 15.07 4.71 4.71 Total: -1.00 -30.81 312.71 -9.01 -39.82 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: -5.63 Total: 23.52 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -4.26 Total: -18.80 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: 1.21 Total: -63.43 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.81 -9.01 -39.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716754526.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.924 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds