Wall clock time and date at job start Mon Mar 30 2020 05:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 110.99612 * 2 1 4 4 C 1.50697 * 109.47620 * 293.95600 * 3 2 1 5 5 O 1.21277 * 119.99774 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00261 * 179.97438 * 4 3 2 7 7 C 1.46507 * 119.99575 * 0.02562 * 6 4 3 8 8 C 1.46500 * 120.00183 * 180.02562 * 6 4 3 9 9 C 1.50696 * 109.46738 * 90.00346 * 8 6 4 10 10 H 1.07996 * 120.00808 * 359.97438 * 9 8 6 11 11 C 1.37877 * 119.99757 * 180.02562 * 9 8 6 12 12 N 1.31515 * 120.00164 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00126 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46898 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47471 * 120.00047 * 13 11 9 16 16 H 1.48506 * 109.47035 * 240.00198 * 13 11 9 17 17 C 1.46902 * 111.00144 * 123.95803 * 2 1 3 18 18 C 1.52998 * 109.46909 * 66.04870 * 17 2 1 19 19 C 1.53042 * 113.14878 * 185.00135 * 18 17 2 20 20 S 1.81425 * 89.93235 * 211.82965 * 19 18 17 21 21 C 1.53039 * 113.15312 * 84.62414 * 18 17 2 22 22 H 1.09001 * 109.46986 * 296.04253 * 1 2 3 23 23 H 1.08998 * 109.47674 * 56.04401 * 1 2 3 24 24 H 1.08999 * 109.47207 * 176.04225 * 1 2 3 25 25 H 1.09005 * 109.47187 * 53.96186 * 3 2 1 26 26 H 1.09003 * 109.46835 * 173.95504 * 3 2 1 27 27 H 1.08999 * 109.46875 * 89.99782 * 7 6 4 28 28 H 1.09004 * 109.46743 * 209.99514 * 7 6 4 29 29 H 1.09003 * 109.47285 * 329.99966 * 7 6 4 30 30 H 1.08997 * 109.46835 * 209.99876 * 8 6 4 31 31 H 1.08993 * 109.46806 * 330.00272 * 8 6 4 32 32 H 0.97003 * 120.00261 * 180.02562 * 12 11 9 33 33 H 1.08999 * 109.46674 * 306.04447 * 17 2 1 34 34 H 1.08991 * 109.46571 * 186.04660 * 17 2 1 35 35 H 1.09002 * 112.49481 * 314.77883 * 18 17 2 36 36 H 1.09002 * 113.14805 * 327.10916 * 19 18 17 37 37 H 1.09003 * 113.15177 * 96.55360 * 19 18 17 38 38 H 1.08997 * 113.14758 * 263.40323 * 21 18 17 39 39 H 1.08997 * 113.15183 * 32.84975 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0473 -1.2984 5 8 1.0046 1.4458 -2.1406 6 7 2.0178 3.3204 -1.5232 7 6 2.7811 4.0471 -0.5054 8 6 1.6688 3.9775 -2.7851 9 6 0.3369 4.6676 -2.6404 10 1 -0.1964 4.6210 -1.7025 11 6 -0.2012 5.3576 -3.7059 12 7 0.4474 5.4131 -4.8486 13 14 -1.8525 6.2124 -3.5269 14 1 -2.3738 5.9992 -2.1528 15 1 -1.6862 7.6673 -3.7736 16 1 -2.8106 5.6497 -4.5122 17 6 1.9955 -0.7661 1.1375 18 6 1.6316 -2.2427 0.9701 19 6 2.0345 -3.1015 2.1710 20 16 2.3136 -4.5126 1.0654 21 6 2.6225 -3.0109 0.0926 22 1 -0.3633 0.4512 0.9233 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3633 -1.0252 -0.0709 25 1 1.5611 1.9274 0.8310 26 1 3.0797 1.3445 0.1082 27 1 3.8471 3.8911 -0.6706 28 1 2.5548 5.1112 -0.5726 29 1 2.5091 3.6795 0.4841 30 1 2.4336 4.7126 -3.0356 31 1 1.6076 3.2322 -3.5780 32 1 0.0690 5.8989 -5.5981 33 1 1.5612 -0.3873 2.0627 34 1 3.0797 -0.6611 1.1755 35 1 0.5932 -2.3849 0.6707 36 1 2.9445 -2.7540 2.6603 37 1 1.2183 -3.2637 2.8750 38 1 2.2985 -3.0977 -0.9445 39 1 3.6456 -2.6455 0.1807 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718164509.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:56 Heat of formation + Delta-G solvation = 0.256491 kcal Electronic energy + Delta-G solvation = -19125.030034 eV Core-core repulsion = 16195.208385 eV Total energy + Delta-G solvation = -2929.821649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.39059 -37.98195 -35.42943 -34.59505 -32.61879 -29.04551 -27.41216 -27.27659 -26.47954 -25.64858 -23.56214 -21.94768 -20.36792 -18.37893 -16.95432 -16.54975 -16.38988 -15.75712 -15.69464 -15.41468 -14.70550 -14.43362 -14.08885 -13.68466 -13.21054 -13.16966 -12.91439 -12.53277 -12.36913 -12.23508 -12.17209 -11.85955 -11.62541 -11.30476 -11.22929 -11.11160 -10.89412 -10.82906 -10.59607 -10.26311 -10.15507 -9.61372 -8.89472 -8.44899 -8.18472 -8.00760 -7.62478 -6.05274 -4.10208 1.58471 1.74370 3.28412 3.35638 3.38410 3.45752 3.54747 4.07271 4.31833 4.44408 4.52100 4.71563 5.00027 5.06099 5.10489 5.13049 5.26425 5.29017 5.35542 5.40703 5.45177 5.56120 5.65245 5.71205 5.74082 5.86507 5.91689 6.18115 6.39056 6.89358 7.07444 7.14263 7.45448 7.55056 7.91460 8.22737 8.43191 8.90256 9.13212 9.55161 11.02728 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035131 B = 0.003475 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.819004 B = 8055.174123 C = 8264.666333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.521 5.521 3 C 0.038 3.962 4 C 0.505 3.495 5 O -0.523 6.523 6 N -0.605 5.605 7 C 0.084 3.916 8 C 0.246 3.754 9 C -0.526 4.526 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.282 1.282 17 C 0.066 3.934 18 C -0.086 4.086 19 C -0.077 4.077 20 S -0.315 6.315 21 C -0.061 4.061 22 H 0.018 0.982 23 H 0.096 0.904 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.095 0.905 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.031 0.969 31 H 0.044 0.956 32 H 0.263 0.737 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.674 -11.024 15.481 19.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.245 5.245 3 C -0.094 4.094 4 C 0.290 3.710 5 O -0.399 6.399 6 N -0.339 5.339 7 C -0.061 4.061 8 C 0.127 3.873 9 C -0.565 4.565 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.208 1.208 17 C -0.064 4.064 18 C -0.106 4.106 19 C -0.226 4.226 20 S -0.089 6.089 21 C -0.209 4.209 22 H 0.037 0.963 23 H 0.114 0.886 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.113 0.887 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.132 0.868 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.479 -12.971 14.325 20.087 hybrid contribution -1.031 2.085 0.917 2.500 sum 4.449 -10.886 15.242 19.251 Atomic orbital electron populations 1.22635 0.86337 1.02486 1.01725 1.61589 1.09059 1.12288 1.41523 1.22054 1.01160 0.89322 0.96815 1.20113 0.80580 0.81910 0.88349 1.90639 1.39048 1.63916 1.46344 1.48170 1.53929 1.11998 1.19788 1.21629 0.94924 0.98589 0.90921 1.19272 0.95489 0.92629 0.79918 1.21464 1.04632 1.32047 0.98311 0.92517 1.24942 0.97691 0.96478 0.95033 1.69943 1.38609 1.42390 1.02378 0.86454 0.83841 0.79008 0.78169 1.19861 1.20971 1.20849 1.22149 1.00348 0.91807 0.92118 1.22557 1.01149 0.94358 0.92525 1.24333 1.05168 0.92774 1.00283 1.89048 1.91501 1.12887 1.15456 1.24369 1.02886 0.90234 1.03442 0.96327 0.88572 0.91561 0.92498 0.88667 0.93744 0.90778 0.92722 0.95075 0.93789 0.92759 0.94039 0.90257 0.86783 0.87805 0.88649 0.88047 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.00 60.07 0.54 0.76 16 2 N -0.52 -6.94 4.50 -244.37 -1.10 -8.04 16 3 C 0.04 0.53 4.00 -4.98 -0.02 0.51 16 4 C 0.50 10.11 7.37 -10.99 -0.08 10.03 16 5 O -0.52 -12.76 13.91 5.56 0.08 -12.68 16 6 N -0.61 -12.49 2.86 -182.95 -0.52 -13.02 16 7 C 0.08 1.26 10.24 59.85 0.61 1.87 16 8 C 0.25 6.37 5.16 -5.20 -0.03 6.35 16 9 C -0.53 -14.75 9.39 -34.44 -0.32 -15.08 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 13 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 C 0.07 0.61 4.73 -3.82 -0.02 0.59 16 18 C -0.09 -0.76 3.38 -90.58 -0.31 -1.07 16 19 C -0.08 -0.59 7.49 37.18 0.28 -0.31 16 20 S -0.32 -3.40 24.80 -107.50 -2.67 -6.07 16 21 C -0.06 -0.59 7.49 37.18 0.28 -0.31 16 22 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.10 1.74 5.82 -51.93 -0.30 1.44 16 24 H 0.07 0.81 6.29 -51.93 -0.33 0.48 16 25 H 0.06 0.72 7.38 -51.93 -0.38 0.33 16 26 H 0.10 1.10 7.90 -51.93 -0.41 0.69 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 29 H 0.05 0.65 6.44 -51.93 -0.33 0.32 16 30 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.08 0.63 7.68 -51.93 -0.40 0.24 16 35 H 0.11 1.11 6.26 -51.93 -0.33 0.78 16 36 H 0.10 0.65 8.12 -51.93 -0.42 0.23 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.10 0.89 7.94 -51.93 -0.41 0.47 16 LS Contribution 328.14 15.07 4.94 4.94 Total: -1.00 -32.93 328.14 -8.91 -41.84 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -6.20 Total: -2.86 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 0.84 Total: 4.96 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.89 Total: -46.80 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.08 Total: -12.68 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -2.67 Total: -6.07 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.93 -8.91 -41.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718164509.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.097 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds