Wall clock time and date at job start Mon Mar 30 2020 05:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46494 * 120.00078 * 2 1 4 4 C 1.53001 * 109.47214 * 90.00062 * 3 2 1 5 5 C 1.55885 * 110.82198 * 175.00040 * 4 3 2 6 6 S 1.83083 * 82.48198 * 142.75572 * 5 4 3 7 7 C 1.56011 * 110.86795 * 288.60422 * 4 3 2 8 8 C 1.34780 * 119.99509 * 179.97438 * 2 1 3 9 9 O 1.21287 * 119.99497 * 179.97438 * 8 2 1 10 10 C 1.50704 * 120.00338 * 0.02562 * 8 2 1 11 11 H 1.08997 * 109.46592 * 39.99622 * 10 8 2 12 12 N 1.46900 * 109.46963 * 159.99500 * 10 8 2 13 13 C 1.52997 * 109.46638 * 279.99456 * 10 8 2 14 14 C 1.53005 * 109.46634 * 174.99766 * 13 10 8 15 15 C 1.50702 * 109.46706 * 180.02562 * 14 13 10 16 16 H 1.07998 * 120.00449 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99512 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99465 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00214 * 0.02562 * 17 15 14 20 20 H 1.48492 * 109.47105 * 90.00098 * 19 17 15 21 21 H 1.48498 * 109.46954 * 210.00511 * 19 17 15 22 22 H 1.48499 * 109.47107 * 329.99793 * 19 17 15 23 23 H 1.09005 * 109.46895 * 90.00226 * 1 2 3 24 24 H 1.09001 * 109.47286 * 210.00029 * 1 2 3 25 25 H 1.09000 * 109.47418 * 330.00439 * 1 2 3 26 26 H 1.08995 * 109.47477 * 329.99707 * 3 2 1 27 27 H 1.09006 * 109.47204 * 209.99759 * 3 2 1 28 28 H 1.08995 * 110.40126 * 51.82258 * 4 3 2 29 29 H 1.09002 * 114.38293 * 29.34356 * 5 4 3 30 30 H 1.09002 * 114.37878 * 256.16630 * 5 4 3 31 31 H 1.09006 * 114.37363 * 103.87421 * 7 4 3 32 32 H 1.09007 * 114.41471 * 330.67720 * 7 4 3 33 33 H 1.00901 * 110.99771 * 60.00302 * 12 10 8 34 34 H 1.00898 * 110.99751 * 183.94955 * 12 10 8 35 35 H 1.08994 * 109.47384 * 294.99800 * 13 10 8 36 36 H 1.08997 * 109.46863 * 55.00433 * 13 10 8 37 37 H 1.08994 * 109.47263 * 300.00107 * 14 13 10 38 38 H 1.08997 * 109.46951 * 60.00721 * 14 13 10 39 39 H 0.97009 * 119.99553 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 6 3.3391 2.9920 1.4811 6 16 2.2454 3.4149 2.8871 7 6 1.1294 2.1819 2.1215 8 6 2.1388 -1.1673 0.0005 9 8 3.3517 -1.1673 0.0001 10 6 1.3852 -2.4724 0.0005 11 1 0.5221 -2.3935 -0.6603 12 7 2.2676 -3.5473 -0.4727 13 6 0.9129 -2.7885 1.4210 14 6 0.0429 -4.0469 1.4009 15 6 -0.4229 -4.3579 2.8001 16 1 -0.1282 -3.7214 3.6213 17 6 -1.2252 -5.4551 3.0316 18 7 -1.6321 -5.7261 4.2525 19 14 -1.7342 -6.5564 1.6112 20 1 -0.7310 -7.6374 1.4389 21 1 -3.0622 -7.1548 1.9002 22 1 -1.8144 -5.7522 0.3654 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6085 2.0283 -0.5138 27 1 3.1500 1.1383 -0.5138 28 1 2.9136 0.9029 2.0112 29 1 3.2281 3.6422 0.6133 30 1 4.3780 2.8122 1.7574 31 1 0.7030 1.4643 2.8225 32 1 0.3960 2.6041 1.4344 33 1 3.0760 -3.6404 0.1239 34 1 1.7677 -4.4208 -0.5431 35 1 1.7779 -2.9549 2.0629 36 1 0.3311 -1.9507 1.8053 37 1 -0.8221 -3.8804 0.7590 38 1 0.6247 -4.8847 1.0167 39 1 -2.1969 -6.4979 4.4153 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718241203.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:33 Heat of formation + Delta-G solvation = -43.483736 kcal Electronic energy + Delta-G solvation = -19392.134945 eV Core-core repulsion = 16460.416577 eV Total energy + Delta-G solvation = -2931.718367 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.21950 -38.07465 -37.06465 -35.41767 -34.77679 -32.07896 -29.41259 -28.37877 -27.76352 -26.94184 -24.71668 -22.10059 -21.56842 -20.09918 -19.00370 -18.37065 -17.61485 -17.48029 -16.53216 -16.33252 -16.10992 -15.84030 -15.41182 -14.92494 -14.61108 -14.54584 -14.13485 -14.08711 -13.88501 -13.70238 -13.57184 -13.29085 -12.96393 -12.89832 -12.64316 -12.50201 -12.13383 -12.05145 -11.87792 -11.64516 -11.40302 -10.82132 -10.76611 -10.55293 -9.68918 -9.53417 -8.83080 -8.29259 -6.34861 0.65738 1.10578 1.39438 1.40325 1.51731 1.60404 1.99828 2.36762 3.06680 3.35640 3.45341 3.61194 3.70706 3.77300 4.08795 4.18371 4.19631 4.31267 4.36092 4.46810 4.54326 4.57262 4.58703 4.71105 4.73801 4.83315 4.92871 5.00677 5.03178 5.38460 5.46582 5.57855 5.62994 6.04799 6.25421 6.36363 6.48773 6.73843 7.18489 7.30211 8.87550 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022490 B = 0.004423 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.701200 B = 6328.351162 C = 7062.379723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.610 5.610 3 C 0.124 3.876 4 C -0.125 4.125 5 C -0.033 4.033 6 S -0.393 6.393 7 C -0.041 4.041 8 C 0.522 3.478 9 O -0.570 6.570 10 C 0.079 3.921 11 H 0.118 0.882 12 N -0.831 5.831 13 C -0.118 4.118 14 C -0.005 4.005 15 C -0.533 4.533 16 H 0.025 0.975 17 C 0.003 3.997 18 N -0.953 5.953 19 Si 0.952 3.048 20 H -0.270 1.270 21 H -0.288 1.288 22 H -0.234 1.234 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.096 0.904 26 H 0.117 0.883 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.137 0.863 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.135 0.865 33 H 0.344 0.656 34 H 0.354 0.646 35 H 0.037 0.963 36 H 0.068 0.932 37 H 0.034 0.966 38 H 0.021 0.979 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.868 16.319 -13.322 21.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.342 5.342 3 C 0.000 4.000 4 C -0.145 4.145 5 C -0.182 4.182 6 S -0.167 6.167 7 C -0.189 4.189 8 C 0.310 3.690 9 O -0.449 6.449 10 C -0.036 4.036 11 H 0.136 0.864 12 N -0.363 5.363 13 C -0.158 4.158 14 C -0.042 4.042 15 C -0.571 4.571 16 H 0.044 0.956 17 C -0.193 4.193 18 N -0.594 5.594 19 Si 0.775 3.225 20 H -0.195 1.195 21 H -0.215 1.215 22 H -0.157 1.157 23 H 0.099 0.901 24 H 0.090 0.910 25 H 0.114 0.886 26 H 0.135 0.865 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.155 0.845 30 H 0.131 0.869 31 H 0.118 0.882 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.169 0.831 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.039 0.961 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.486 17.487 -12.806 22.134 hybrid contribution -0.494 -1.911 0.655 2.080 sum 3.992 15.576 -12.151 20.154 Atomic orbital electron populations 1.22279 0.77480 1.04792 1.03765 1.47834 1.08188 1.05188 1.73013 1.21726 0.98544 0.84966 0.94813 1.23738 0.93646 0.98416 0.98749 1.24855 1.00494 0.96615 0.96201 1.88888 1.25675 1.61779 1.40404 1.25010 0.97734 0.95954 1.00161 1.20789 0.87492 0.86131 0.74581 1.90623 1.15483 1.87840 1.50957 1.21473 0.95845 0.89893 0.96350 0.86447 1.58773 1.10916 1.09385 1.57216 1.22052 0.99191 0.99528 0.95047 1.19494 0.95537 0.94147 0.95067 1.21423 1.30608 1.10981 0.94097 0.95628 1.26066 0.95560 0.99197 0.98505 1.70088 1.37117 1.29359 1.22834 0.85630 0.77515 0.79022 0.80305 1.19506 1.21458 1.15725 0.90138 0.91044 0.88587 0.86463 0.90324 0.90827 0.84513 0.86908 0.88164 0.84645 0.84329 0.83115 0.94418 0.91317 0.94795 0.96063 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.89 9.64 127.77 1.23 2.12 16 2 N -0.61 -12.50 2.83 -846.75 -2.40 -14.90 16 3 C 0.12 1.99 4.96 86.38 0.43 2.42 16 4 C -0.12 -2.23 3.05 -8.75 -0.03 -2.26 16 5 C -0.03 -0.50 8.51 72.98 0.62 0.12 16 6 S -0.39 -8.56 24.06 -56.49 -1.36 -9.92 16 7 C -0.04 -0.69 7.20 73.03 0.53 -0.16 16 8 C 0.52 15.06 6.93 87.66 0.61 15.67 16 9 O -0.57 -20.28 15.83 -3.05 -0.05 -20.33 16 10 C 0.08 2.30 2.37 44.17 0.10 2.41 16 11 H 0.12 2.93 7.21 -2.39 -0.02 2.91 16 12 N -0.83 -24.76 8.94 -171.80 -1.54 -26.29 16 13 C -0.12 -4.19 4.45 30.60 0.14 -4.05 16 14 C 0.00 -0.21 3.81 29.85 0.11 -0.09 16 15 C -0.53 -29.30 9.66 25.60 0.25 -29.06 16 16 H 0.03 1.58 7.99 -2.91 -0.02 1.56 16 17 C 0.00 0.19 5.47 84.66 0.46 0.66 16 18 N -0.95 -58.72 13.96 21.45 0.30 -58.42 16 19 Si 0.95 41.74 27.47 68.60 1.88 43.62 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 21 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.23 -9.05 6.54 99.48 0.65 -8.40 16 23 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 24 H 0.07 1.36 4.83 -2.39 -0.01 1.35 16 25 H 0.10 0.99 6.18 -2.39 -0.01 0.97 16 26 H 0.12 1.05 8.02 -2.39 -0.02 1.03 16 27 H 0.08 1.50 7.42 -2.38 -0.02 1.48 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.14 1.26 8.10 -2.39 -0.02 1.25 16 30 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.14 1.48 7.34 -2.38 -0.02 1.46 16 33 H 0.34 10.85 8.58 -89.69 -0.77 10.09 16 34 H 0.35 9.90 7.55 -89.70 -0.68 9.22 16 35 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 2.35 6.43 -2.39 -0.02 2.33 16 37 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 38 H 0.02 0.85 6.29 -2.39 -0.02 0.84 16 39 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -72.37 322.04 0.85 -71.51 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: -0.44 Total: 26.95 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 4.45 Total: -12.24 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -3.64 Total: -99.60 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.05 Total: -20.33 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 1.88 Total: 43.62 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.36 Total: -9.92 kcal Total: -72.37 0.85 -71.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718241203.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.028 kcal (2) G-P(sol) polarization free energy of solvation -72.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds