Wall clock time and date at job start Mon Mar 30 2020 05:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99813 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00047 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47231 * 89.99796 * 8 6 4 10 10 H 1.48499 * 109.47342 * 210.00322 * 8 6 4 11 11 H 1.48505 * 109.46935 * 330.00024 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 C 1.52996 * 109.47159 * 179.72352 * 14 12 2 16 16 N 1.46905 * 109.22146 * 60.59245 * 15 14 12 17 17 C 1.52581 * 109.22465 * 301.23633 * 15 14 12 18 18 C 1.53101 * 109.95975 * 169.00515 * 17 15 14 19 19 S 1.81740 * 108.83958 * 63.02048 * 18 17 15 20 20 C 1.81750 * 102.22390 * 306.73875 * 19 18 17 21 21 C 1.52578 * 109.22853 * 179.97438 * 15 14 12 22 22 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 23 23 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 24 24 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 25 25 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 26 26 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 27 27 H 0.97004 * 119.99796 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 29 29 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 30 30 H 1.00896 * 110.99864 * 300.00201 * 16 15 14 31 31 H 1.00901 * 110.99836 * 63.96309 * 16 15 14 32 32 H 1.09004 * 109.38751 * 289.15025 * 17 15 14 33 33 H 1.08999 * 109.39351 * 48.85727 * 17 15 14 34 34 H 1.09002 * 109.57161 * 303.21902 * 18 17 15 35 35 H 1.08994 * 109.68425 * 182.89397 * 18 17 15 36 36 H 1.09004 * 109.57384 * 293.45863 * 20 19 18 37 37 H 1.09002 * 109.68381 * 173.14175 * 20 19 18 38 38 H 1.08999 * 109.39039 * 311.14573 * 21 15 14 39 39 H 1.09003 * 109.38527 * 70.94510 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.3456 3.2573 -2.9128 8 14 3.7349 3.9282 -0.2531 9 1 5.1082 3.5060 0.1225 10 1 3.7506 5.3550 -0.6644 11 1 2.8291 3.7587 0.9115 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 6 2.3798 -3.6352 -0.0104 16 7 3.2117 -3.5655 1.1984 17 6 3.2742 -3.5260 -1.2417 18 6 4.4424 -4.5091 -1.1279 19 16 3.7834 -6.2025 -1.0960 20 6 2.5685 -6.1173 0.2531 21 6 1.6114 -4.9533 -0.0156 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8899 -0.5139 24 1 -0.3632 -0.8900 -0.5138 25 1 1.6083 2.0285 0.5137 26 1 3.1499 1.1385 0.5139 27 1 3.8224 4.0832 -3.0901 28 1 0.7588 -2.5340 0.8844 29 1 0.7590 -2.5261 -0.8955 30 1 3.7254 -2.6978 1.2343 31 1 2.6531 -3.6896 2.0295 32 1 2.6919 -3.7577 -2.1336 33 1 3.6623 -2.5104 -1.3183 34 1 4.9948 -4.3149 -0.2085 35 1 5.1060 -4.3915 -1.9845 36 1 3.0845 -5.9545 1.1994 37 1 2.0058 -7.0497 0.2999 38 1 0.8449 -4.9284 0.7590 39 1 1.1389 -5.0928 -0.9880 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719746117.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:47 Heat of formation + Delta-G solvation = -56.599921 kcal Electronic energy + Delta-G solvation = -19965.964795 eV Core-core repulsion = 17033.677667 eV Total energy + Delta-G solvation = -2932.287128 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.35295 -38.78895 -36.56040 -34.73492 -32.42536 -32.29390 -31.21201 -29.69797 -27.38356 -25.98364 -24.08437 -23.91699 -20.55396 -19.86702 -19.16803 -18.04653 -17.48181 -17.23963 -16.67163 -16.56662 -16.01321 -15.48018 -15.21149 -14.71647 -14.68323 -14.56389 -14.15178 -14.02928 -13.65891 -13.51934 -13.28619 -13.11786 -13.04497 -12.79214 -12.60145 -12.46228 -12.20081 -12.12881 -12.03259 -11.76819 -11.32581 -10.85434 -10.65024 -10.27138 -9.60905 -9.36305 -8.54395 -8.36198 -6.41468 1.02108 1.31027 1.34815 1.42942 1.72346 1.78549 2.28543 2.33358 2.98645 3.48799 3.58424 3.77632 3.90893 4.09009 4.16410 4.34208 4.37359 4.43057 4.53585 4.61009 4.63651 4.72275 4.80031 4.84696 4.86524 4.94816 4.97142 5.04382 5.13247 5.32542 5.33305 5.44284 5.59851 6.20230 6.28658 6.60314 6.66630 6.72643 7.20126 7.43175 8.80813 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029310 B = 0.004825 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.078416 B = 5801.767410 C = 6186.968844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.607 5.607 3 C 0.224 3.776 4 C -0.535 4.535 5 H 0.026 0.974 6 C 0.011 3.989 7 N -0.946 5.946 8 Si 0.949 3.051 9 H -0.276 1.276 10 H -0.277 1.277 11 H -0.238 1.238 12 C 0.496 3.504 13 O -0.575 6.575 14 C -0.157 4.157 15 C 0.137 3.863 16 N -0.840 5.840 17 C -0.122 4.122 18 C -0.050 4.050 19 S -0.315 6.315 20 C -0.055 4.055 21 C -0.102 4.102 22 H 0.080 0.920 23 H 0.061 0.939 24 H 0.089 0.911 25 H 0.046 0.954 26 H 0.022 0.978 27 H 0.268 0.732 28 H 0.124 0.876 29 H 0.106 0.894 30 H 0.348 0.652 31 H 0.343 0.657 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.362 -15.757 10.882 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.338 5.338 3 C 0.101 3.899 4 C -0.573 4.573 5 H 0.045 0.955 6 C -0.187 4.187 7 N -0.587 5.587 8 Si 0.772 3.228 9 H -0.202 1.202 10 H -0.202 1.202 11 H -0.161 1.161 12 C 0.286 3.714 13 O -0.456 6.456 14 C -0.199 4.199 15 C 0.043 3.957 16 N -0.375 5.375 17 C -0.162 4.162 18 C -0.199 4.199 19 S -0.090 6.090 20 C -0.203 4.203 21 C -0.142 4.142 22 H 0.098 0.902 23 H 0.080 0.920 24 H 0.107 0.893 25 H 0.064 0.936 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.142 0.858 29 H 0.124 0.876 30 H 0.166 0.834 31 H 0.157 0.843 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.028 -17.104 9.848 20.950 hybrid contribution -0.166 2.894 0.597 2.960 sum -7.194 -14.209 10.444 19.046 Atomic orbital electron populations 1.21966 0.77903 1.03891 1.02896 1.48010 1.08311 1.06128 1.71345 1.19303 0.92778 0.82692 0.95101 1.21552 1.36654 1.06674 0.92456 0.95531 1.25861 0.95357 0.98991 0.98522 1.70057 1.42751 1.24485 1.21358 0.85698 0.79537 0.77725 0.79852 1.20181 1.20235 1.16117 1.21327 0.88033 0.86383 0.75699 1.90520 1.15890 1.87412 1.51800 1.22580 0.99973 0.90961 1.06353 1.20397 0.90845 0.93220 0.91219 1.59079 1.30459 1.44374 1.03602 1.21948 0.96508 1.00180 0.97524 1.23099 0.99729 0.92084 1.04960 1.86639 1.53334 1.18911 1.50084 1.23296 0.96922 1.01938 0.98109 1.21737 0.97271 0.91025 1.04125 0.90174 0.91967 0.89252 0.93623 0.96038 0.92312 0.85840 0.87604 0.83405 0.84329 0.91782 0.91265 0.89519 0.89859 0.88624 0.86783 0.87929 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.95 10.25 127.77 1.31 3.26 16 2 N -0.61 -22.55 2.86 -851.12 -2.43 -24.98 16 3 C 0.22 10.42 4.23 85.63 0.36 10.78 16 4 C -0.53 -30.82 9.94 25.60 0.25 -30.56 16 5 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 6 C 0.01 0.62 5.47 84.66 0.46 1.08 16 7 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 8 Si 0.95 43.84 27.47 68.60 1.88 45.72 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.24 -9.79 6.54 99.48 0.65 -9.14 16 12 C 0.50 17.46 7.06 87.66 0.62 18.08 16 13 O -0.58 -24.87 11.12 -3.04 -0.03 -24.91 16 14 C -0.16 -3.55 3.44 29.85 0.10 -3.45 16 15 C 0.14 3.12 0.53 3.25 0.00 3.12 16 16 N -0.84 -19.49 6.33 -152.66 -0.97 -20.45 16 17 C -0.12 -3.66 4.55 30.49 0.14 -3.52 16 18 C -0.05 -1.46 6.24 72.02 0.45 -1.01 16 19 S -0.32 -7.99 22.33 -56.49 -1.26 -9.25 16 20 C -0.05 -0.99 6.24 72.01 0.45 -0.54 16 21 C -0.10 -1.68 4.76 30.48 0.15 -1.53 16 22 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.06 1.79 8.07 -2.39 -0.02 1.77 16 24 H 0.09 1.78 6.43 -2.39 -0.02 1.76 16 25 H 0.05 1.97 7.13 -2.39 -0.02 1.95 16 26 H 0.02 1.07 6.85 -2.38 -0.02 1.05 16 27 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 28 H 0.12 1.92 8.11 -2.38 -0.02 1.90 16 29 H 0.11 2.19 7.40 -2.39 -0.02 2.18 16 30 H 0.35 10.43 6.34 -89.70 -0.57 9.86 16 31 H 0.34 6.12 8.97 -89.69 -0.80 5.32 16 32 H 0.06 1.88 8.06 -2.39 -0.02 1.86 16 33 H 0.07 2.70 5.19 -2.39 -0.01 2.69 16 34 H 0.09 2.64 7.26 -2.39 -0.02 2.62 16 35 H 0.08 2.45 8.14 -2.39 -0.02 2.44 16 36 H 0.10 1.79 7.26 -2.39 -0.02 1.77 16 37 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.10 1.09 8.09 -2.39 -0.02 1.07 16 39 H 0.08 1.33 8.06 -2.39 -0.02 1.31 16 Total: -1.00 -72.50 311.54 1.42 -71.08 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: -0.37 Total: 26.36 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 4.30 Total: -4.29 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -3.10 Total: -104.71 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.03 Total: -24.91 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.72 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.26 Total: -9.25 kcal Total: -72.50 1.42 -71.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719746117.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.482 kcal (2) G-P(sol) polarization free energy of solvation -72.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds