Wall clock time and date at job start Mon Mar 30 2020 05:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.28527 * 2 1 4 4 C 1.54378 * 110.40621 * 237.81982 * 2 1 3 5 5 N 1.48558 * 104.59300 * 264.90690 * 4 2 1 6 6 C 1.48564 * 104.22648 * 320.52120 * 5 4 2 7 7 C 1.54258 * 110.32588 * 122.12913 * 2 1 3 8 8 H 1.08999 * 110.32436 * 359.97438 * 7 2 1 9 9 C 1.52998 * 110.32291 * 237.89529 * 7 2 1 10 10 C 1.52999 * 109.47133 * 175.00192 * 9 7 2 11 11 N 1.46503 * 109.47156 * 179.97438 * 10 9 7 12 12 C 1.34781 * 119.99634 * 179.97438 * 11 10 9 13 13 O 1.21274 * 120.00344 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99423 * 179.97438 * 12 11 10 15 15 S 1.81001 * 109.46896 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99894 * 180.02562 * 15 14 12 17 17 H 1.07991 * 120.00323 * 359.97438 * 16 15 14 18 18 C 1.38805 * 119.99766 * 179.97438 * 16 15 14 19 19 N 1.31633 * 120.00034 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16 22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16 23 23 H 1.48490 * 109.46901 * 150.00205 * 20 18 16 24 24 H 1.09002 * 109.46645 * 297.86848 * 1 2 3 25 25 H 1.09000 * 109.47125 * 57.87107 * 1 2 3 26 26 H 1.09000 * 109.47151 * 177.87169 * 1 2 3 27 27 H 1.08994 * 110.41624 * 23.68856 * 4 2 1 28 28 H 1.09003 * 110.40969 * 146.13364 * 4 2 1 29 29 H 1.00902 * 111.00104 * 80.07722 * 5 4 2 30 30 H 1.08997 * 110.40870 * 280.70724 * 6 5 4 31 31 H 1.08994 * 110.41592 * 158.25614 * 6 5 4 32 32 H 1.09001 * 109.47517 * 55.00088 * 9 7 2 33 33 H 1.09003 * 109.47071 * 294.99832 * 9 7 2 34 34 H 1.09003 * 109.47502 * 59.99739 * 10 9 7 35 35 H 1.09003 * 109.46848 * 299.99777 * 10 9 7 36 36 H 0.96994 * 119.99836 * 359.97438 * 11 10 9 37 37 H 1.09001 * 109.47454 * 60.00304 * 14 12 11 38 38 H 1.09003 * 109.47322 * 299.99933 * 14 12 11 39 39 H 0.97001 * 119.99662 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0683 -0.7706 -1.2246 5 7 2.3184 -2.1457 -0.7212 6 6 2.8829 -1.9401 0.6375 7 6 2.0659 -0.7693 1.2250 8 1 1.2389 -1.1466 1.8266 9 6 2.9655 0.1358 2.0690 10 6 3.3849 -0.6047 3.3405 11 7 4.2468 0.2617 4.1484 12 6 4.7394 -0.1829 5.3216 13 8 4.4688 -1.2999 5.7086 14 6 5.6265 0.7082 6.1523 15 16 6.1225 -0.1677 7.6566 16 6 7.1210 1.0696 8.4160 17 1 7.2606 2.0240 7.9303 18 6 7.7283 0.8176 9.6384 19 7 7.5586 -0.3460 10.2301 20 14 8.7874 2.1291 10.4432 21 1 10.1941 1.9741 9.9934 22 1 8.2894 3.4736 10.0565 23 1 8.7207 1.9821 11.9193 24 1 -0.3633 0.4804 0.9085 25 1 -0.3633 0.5465 -0.8703 26 1 -0.3633 -1.0269 -0.0382 27 1 1.3242 -0.7867 -2.0208 28 1 2.9959 -0.3210 -1.5790 29 1 1.4617 -2.6772 -0.6802 30 1 3.9379 -1.6734 0.5745 31 1 2.7520 -2.8366 1.2433 32 1 2.4205 1.0405 2.3385 33 1 3.8527 0.4034 1.4951 34 1 3.9299 -1.5095 3.0711 35 1 2.4977 -0.8723 3.9145 36 1 4.4629 1.1552 3.8390 37 1 5.0824 1.6136 6.4214 38 1 6.5139 0.9747 5.5781 39 1 7.9833 -0.5222 11.0842 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721042522.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:06 Heat of formation + Delta-G solvation = -56.350095 kcal Electronic energy + Delta-G solvation = -18120.820678 eV Core-core repulsion = 15188.544383 eV Total energy + Delta-G solvation = -2932.276295 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.81103 -38.95922 -35.19854 -32.48029 -32.41870 -31.88193 -29.40689 -27.09996 -25.92835 -25.42705 -23.10582 -21.34635 -20.56673 -19.79473 -17.83042 -16.82518 -16.29548 -15.83752 -15.72554 -15.28782 -14.80125 -14.68662 -14.00296 -13.94614 -13.62433 -13.37294 -13.08421 -12.97867 -12.55569 -12.28566 -12.22130 -11.97955 -11.57527 -11.38619 -11.09807 -11.06139 -11.02148 -10.93543 -10.87527 -10.74249 -9.81135 -9.38770 -9.06720 -9.01177 -8.86940 -8.23069 -6.49590 -6.21318 -3.91842 3.04458 3.11567 3.22595 3.28235 3.32518 3.70635 3.89262 4.18607 4.20837 4.33758 4.55656 4.75605 4.86385 4.93427 5.01253 5.13356 5.13746 5.17109 5.22863 5.25058 5.42375 5.44547 5.56302 5.61880 5.64760 5.68795 5.74463 5.83272 5.90088 5.96087 6.01256 6.14506 6.33002 6.63563 6.96577 7.59876 7.72287 8.35578 8.62942 9.23920 10.86136 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.053961 B = 0.002667 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.764980 B =10494.993034 C =10667.824988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 H 0.080 0.920 4 C 0.043 3.957 5 N -0.670 5.670 6 C 0.041 3.959 7 C -0.116 4.116 8 H 0.079 0.921 9 C -0.119 4.119 10 C 0.121 3.879 11 N -0.740 5.740 12 C 0.531 3.469 13 O -0.518 6.518 14 C -0.153 4.153 15 S -0.061 6.061 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.272 1.272 23 H -0.282 1.282 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.335 0.665 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.397 0.603 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.449 2.678 -21.950 25.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 H 0.098 0.902 4 C -0.087 4.087 5 N -0.296 5.296 6 C -0.089 4.089 7 C -0.137 4.137 8 H 0.098 0.902 9 C -0.157 4.157 10 C -0.004 4.004 11 N -0.395 5.395 12 C 0.317 3.683 13 O -0.392 6.392 14 C -0.304 4.304 15 S 0.166 5.834 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.746 3.254 21 H -0.203 1.203 22 H -0.197 1.197 23 H -0.208 1.208 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.151 0.849 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.231 0.769 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.225 0.508 -21.531 24.764 hybrid contribution 0.265 2.946 0.526 3.004 sum -11.959 3.454 -21.005 24.416 Atomic orbital electron populations 1.21852 0.94641 1.01675 1.01957 1.22563 0.96171 1.00588 0.95292 0.90202 1.23088 1.00662 0.88692 0.96272 1.63275 1.31464 1.13717 1.21105 1.23186 0.99638 0.97333 0.88712 1.22557 0.98526 0.96398 0.96226 0.90238 1.21827 0.99744 0.98624 0.95511 1.21295 0.94440 0.93815 0.90814 1.46011 1.52612 1.18694 1.22144 1.20313 0.79854 0.87697 0.80476 1.90698 1.58196 1.20202 1.70139 1.23533 1.01003 1.02678 1.03203 1.85401 1.62911 1.21329 1.13801 1.22868 1.35042 1.02038 1.08403 0.90936 1.25002 0.96318 0.96238 0.96084 1.70023 1.41990 1.21699 1.16584 0.86159 0.80097 0.80860 0.78322 1.20263 1.19712 1.20753 0.92391 0.92530 0.92861 0.90894 0.90311 0.84937 0.89897 0.90531 0.91249 0.91046 0.91569 0.91823 0.76902 0.89257 0.89231 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.91 37.16 0.33 -0.48 16 2 C -0.13 -0.78 3.30 -89.24 -0.29 -1.08 16 3 H 0.08 0.49 7.71 -51.93 -0.40 0.09 16 4 C 0.04 0.28 7.02 -2.18 -0.02 0.26 16 5 N -0.67 -5.18 7.62 -109.66 -0.84 -6.02 16 6 C 0.04 0.33 6.28 -2.18 -0.01 0.31 16 7 C -0.12 -0.84 2.71 -89.24 -0.24 -1.08 16 8 H 0.08 0.60 7.71 -51.93 -0.40 0.20 16 9 C -0.12 -0.93 4.51 -26.73 -0.12 -1.05 16 10 C 0.12 1.37 5.54 -4.04 -0.02 1.35 16 11 N -0.74 -9.86 5.56 -60.29 -0.33 -10.20 16 12 C 0.53 10.02 7.85 -10.98 -0.09 9.93 16 13 O -0.52 -11.95 15.86 5.56 0.09 -11.86 16 14 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 15 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 16 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 17 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 18 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -26.31 13.22 55.49 0.73 -25.57 16 20 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.41 7.86 -51.93 -0.41 0.00 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.34 2.22 8.92 -39.29 -0.35 1.87 16 30 H 0.08 0.73 7.75 -51.93 -0.40 0.33 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.53 7.98 -51.93 -0.41 0.12 16 34 H 0.07 0.82 7.58 -51.93 -0.39 0.42 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.40 4.08 8.47 -40.82 -0.35 3.74 16 37 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 38 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 334.35 15.07 5.04 5.04 Total: -1.00 -34.07 334.35 -9.05 -43.13 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.46 Total: 0.69 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -0.04 Total: -7.77 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: -0.44 Total: -41.78 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.07 -9.05 -43.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721042522.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.224 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds