Wall clock time and date at job start Mon Mar 30 2020 05:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.28527 * 2 1 4 4 C 1.54378 * 110.40621 * 237.81982 * 2 1 3 5 5 N 1.48558 * 104.59300 * 264.90690 * 4 2 1 6 6 C 1.48564 * 104.22648 * 320.52120 * 5 4 2 7 7 C 1.54258 * 110.32588 * 122.12913 * 2 1 3 8 8 H 1.08999 * 110.32436 * 359.97438 * 7 2 1 9 9 C 1.52998 * 110.32291 * 237.89529 * 7 2 1 10 10 C 1.52999 * 109.47133 * 175.00192 * 9 7 2 11 11 N 1.46503 * 109.47156 * 179.97438 * 10 9 7 12 12 C 1.34781 * 119.99634 * 179.97438 * 11 10 9 13 13 O 1.21274 * 120.00344 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99423 * 179.97438 * 12 11 10 15 15 S 1.81001 * 109.46896 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99894 * 180.02562 * 15 14 12 17 17 H 1.07991 * 120.00323 * 359.97438 * 16 15 14 18 18 C 1.38805 * 119.99766 * 179.97438 * 16 15 14 19 19 N 1.31633 * 120.00034 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16 22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16 23 23 H 1.48490 * 109.46901 * 150.00205 * 20 18 16 24 24 H 1.09002 * 109.46645 * 297.86848 * 1 2 3 25 25 H 1.09000 * 109.47125 * 57.87107 * 1 2 3 26 26 H 1.09000 * 109.47151 * 177.87169 * 1 2 3 27 27 H 1.08994 * 110.41624 * 23.68856 * 4 2 1 28 28 H 1.09003 * 110.40969 * 146.13364 * 4 2 1 29 29 H 1.00902 * 111.00104 * 80.07722 * 5 4 2 30 30 H 1.08997 * 110.40870 * 280.70724 * 6 5 4 31 31 H 1.08994 * 110.41592 * 158.25614 * 6 5 4 32 32 H 1.09001 * 109.47517 * 55.00088 * 9 7 2 33 33 H 1.09003 * 109.47071 * 294.99832 * 9 7 2 34 34 H 1.09003 * 109.47502 * 59.99739 * 10 9 7 35 35 H 1.09003 * 109.46848 * 299.99777 * 10 9 7 36 36 H 0.96994 * 119.99836 * 359.97438 * 11 10 9 37 37 H 1.09001 * 109.47454 * 60.00304 * 14 12 11 38 38 H 1.09003 * 109.47322 * 299.99933 * 14 12 11 39 39 H 0.97001 * 119.99662 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0683 -0.7706 -1.2246 5 7 2.3184 -2.1457 -0.7212 6 6 2.8829 -1.9401 0.6375 7 6 2.0659 -0.7693 1.2250 8 1 1.2389 -1.1466 1.8266 9 6 2.9655 0.1358 2.0690 10 6 3.3849 -0.6047 3.3405 11 7 4.2468 0.2617 4.1484 12 6 4.7394 -0.1829 5.3216 13 8 4.4688 -1.2999 5.7086 14 6 5.6265 0.7082 6.1523 15 16 6.1225 -0.1677 7.6566 16 6 7.1210 1.0696 8.4160 17 1 7.2606 2.0240 7.9303 18 6 7.7283 0.8176 9.6384 19 7 7.5586 -0.3460 10.2301 20 14 8.7874 2.1291 10.4432 21 1 10.1941 1.9741 9.9934 22 1 8.2894 3.4736 10.0565 23 1 8.7207 1.9821 11.9193 24 1 -0.3633 0.4804 0.9085 25 1 -0.3633 0.5465 -0.8703 26 1 -0.3633 -1.0269 -0.0382 27 1 1.3242 -0.7867 -2.0208 28 1 2.9959 -0.3210 -1.5790 29 1 1.4617 -2.6772 -0.6802 30 1 3.9379 -1.6734 0.5745 31 1 2.7520 -2.8366 1.2433 32 1 2.4205 1.0405 2.3385 33 1 3.8527 0.4034 1.4951 34 1 3.9299 -1.5095 3.0711 35 1 2.4977 -0.8723 3.9145 36 1 4.4629 1.1552 3.8390 37 1 5.0824 1.6136 6.4214 38 1 6.5139 0.9747 5.5781 39 1 7.9833 -0.5222 11.0842 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721042522.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:05 Heat of formation + Delta-G solvation = -82.007985 kcal Electronic energy + Delta-G solvation = -18121.933288 eV Core-core repulsion = 15188.544383 eV Total energy + Delta-G solvation = -2933.388904 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.75477 -40.06529 -36.34092 -34.58773 -33.36671 -32.53818 -30.81105 -27.98771 -27.57996 -26.50881 -23.88119 -22.03124 -21.85793 -20.48239 -19.81936 -17.80598 -17.50908 -16.97156 -16.87625 -16.85609 -16.06168 -15.83032 -15.61697 -14.74511 -14.55587 -14.50515 -14.39668 -13.87522 -13.62546 -13.43005 -13.17011 -12.94510 -12.88750 -12.76342 -12.61657 -12.36243 -12.02022 -11.76504 -11.64893 -11.50775 -11.47094 -11.14522 -10.93107 -10.28180 -10.12141 -9.58575 -8.67543 -8.34953 -6.13333 1.26963 1.42698 1.47268 1.57736 1.60671 2.26074 2.30446 2.99169 3.30413 3.33744 3.57945 3.75865 3.94777 3.99613 4.14904 4.22974 4.30406 4.37029 4.38769 4.50404 4.51328 4.63481 4.68666 4.73539 4.91563 4.96359 5.06259 5.07947 5.17671 5.22846 5.23879 5.41559 5.42754 5.45098 5.77757 6.19624 6.43355 6.51060 7.06232 7.24536 8.74360 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.053961 B = 0.002667 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.764980 B =10494.993034 C =10667.824988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 H 0.086 0.914 4 C 0.043 3.957 5 N -0.682 5.682 6 C 0.040 3.960 7 C -0.112 4.112 8 H 0.076 0.924 9 C -0.105 4.105 10 C 0.120 3.880 11 N -0.713 5.713 12 C 0.531 3.469 13 O -0.568 6.568 14 C -0.129 4.129 15 S -0.154 6.154 16 C -0.546 4.546 17 H 0.083 0.917 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 1.000 3.000 21 H -0.268 1.268 22 H -0.258 1.258 23 H -0.278 1.278 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.341 0.659 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.417 0.583 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.582 5.085 -23.501 27.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.139 4.139 3 H 0.104 0.896 4 C -0.087 4.087 5 N -0.308 5.308 6 C -0.090 4.090 7 C -0.133 4.133 8 H 0.094 0.906 9 C -0.143 4.143 10 C -0.004 4.004 11 N -0.367 5.367 12 C 0.317 3.683 13 O -0.446 6.446 14 C -0.281 4.281 15 S 0.073 5.927 16 C -0.694 4.694 17 H 0.102 0.898 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.822 3.178 21 H -0.193 1.193 22 H -0.181 1.181 23 H -0.203 1.203 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.157 0.843 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.254 0.746 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.376 2.955 -23.141 26.408 hybrid contribution 0.232 2.172 0.869 2.351 sum -12.144 5.127 -22.272 25.880 Atomic orbital electron populations 1.21838 0.94087 1.01782 1.02256 1.22506 0.96542 1.00571 0.94312 0.89550 1.23116 1.00876 0.88006 0.96672 1.63259 1.32021 1.14654 1.20864 1.23137 0.99341 0.97456 0.89035 1.22508 0.98132 0.96112 0.96524 0.90561 1.21746 1.00391 0.98606 0.93595 1.21435 0.93355 0.93770 0.91810 1.45770 1.51121 1.19643 1.20174 1.20105 0.79786 0.86757 0.81678 1.90688 1.60158 1.22147 1.71652 1.23378 1.02398 1.02434 0.99853 1.85596 1.63799 1.24531 1.18809 1.23204 1.35040 1.02211 1.08898 0.89848 1.26159 0.97682 0.98739 0.96705 1.70190 1.43338 1.24160 1.17150 0.84930 0.77998 0.77871 0.77032 1.19292 1.18137 1.20314 0.92612 0.91663 0.92944 0.89836 0.90625 0.84321 0.90743 0.91221 0.89880 0.90028 0.92607 0.92835 0.74626 0.87137 0.87135 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.91 71.98 0.64 -0.65 16 2 C -0.12 -1.21 3.30 -9.90 -0.03 -1.24 16 3 H 0.09 0.80 7.71 -2.39 -0.02 0.78 16 4 C 0.04 0.48 7.02 86.45 0.61 1.09 16 5 N -0.68 -9.76 7.62 -500.87 -3.82 -13.58 16 6 C 0.04 0.61 6.28 86.45 0.54 1.15 16 7 C -0.11 -1.42 2.71 -9.90 -0.03 -1.45 16 8 H 0.08 1.05 7.71 -2.39 -0.02 1.03 16 9 C -0.11 -1.39 4.51 30.59 0.14 -1.25 16 10 C 0.12 2.58 5.54 86.38 0.48 3.06 16 11 N -0.71 -17.63 5.56 -463.05 -2.57 -20.20 16 12 C 0.53 19.70 7.85 87.66 0.69 20.39 16 13 O -0.57 -26.74 15.86 -3.01 -0.05 -26.78 16 14 C -0.13 -5.12 6.16 71.24 0.44 -4.69 16 15 S -0.15 -8.65 20.57 -56.49 -1.16 -9.81 16 16 C -0.55 -31.26 9.50 67.96 0.65 -30.61 16 17 H 0.08 4.42 7.80 -2.92 -0.02 4.39 16 18 C 0.01 0.67 5.49 84.86 0.47 1.14 16 19 N -0.91 -56.34 13.22 21.65 0.29 -56.05 16 20 Si 1.00 43.62 29.55 68.60 2.03 45.65 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.08 0.76 7.86 -2.39 -0.02 0.74 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.34 4.15 8.92 -89.69 -0.80 3.35 16 30 H 0.07 1.25 7.75 -2.39 -0.02 1.23 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 0.97 7.98 -2.39 -0.02 0.95 16 34 H 0.06 1.36 7.58 -2.39 -0.02 1.34 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.42 7.21 8.47 -92.71 -0.79 6.43 16 37 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 38 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 39 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -75.57 334.35 -1.25 -76.82 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -0.54 Total: 17.02 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 4.59 Total: -13.07 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -6.11 Total: -89.83 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.05 Total: -26.78 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -75.57 -1.25 -76.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721042522.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.187 kcal (2) G-P(sol) polarization free energy of solvation -75.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds