Wall clock time and date at job start Mon Mar 30 2020 04:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39619 * 120.56797 * 294.47559 * 3 2 1 5 5 N 1.31662 * 120.55813 * 179.97438 * 4 3 2 6 6 C 1.31949 * 121.88321 * 0.02562 * 5 4 3 7 7 C 1.38313 * 121.09610 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.34322 * 180.02562 * 7 6 5 9 9 N 1.46899 * 109.47342 * 90.00286 * 8 7 6 10 10 C 1.46895 * 110.99989 * 190.00093 * 9 8 7 11 11 C 1.53241 * 109.33538 * 187.25118 * 10 9 8 12 12 N 1.47082 * 108.52509 * 306.16899 * 11 10 9 13 13 C 1.36935 * 120.87800 * 231.18634 * 12 11 10 14 14 H 1.07994 * 120.00243 * 27.12925 * 13 12 11 15 15 C 1.38815 * 119.99552 * 206.84012 * 13 12 11 16 16 N 1.31614 * 119.99986 * 17.18837 * 15 13 12 17 17 Si 1.86797 * 120.00057 * 197.17547 * 15 13 12 18 18 H 1.48508 * 109.47149 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47196 * 120.00464 * 17 15 13 20 20 H 1.48497 * 109.47565 * 240.00842 * 17 15 13 21 21 C 1.47072 * 118.23374 * 51.45730 * 12 11 10 22 22 C 1.46908 * 110.99894 * 314.30181 * 9 8 7 23 23 C 1.38382 * 119.31140 * 0.27954 * 7 6 5 24 24 H 1.07999 * 119.72505 * 359.97438 * 4 3 2 25 25 H 1.08002 * 119.45178 * 180.02562 * 6 5 4 26 26 H 1.09004 * 109.46889 * 329.99981 * 8 7 6 27 27 H 1.08999 * 109.46899 * 210.00209 * 8 7 6 28 28 H 1.08994 * 109.49506 * 67.29451 * 10 9 8 29 29 H 1.08997 * 109.49438 * 307.21030 * 10 9 8 30 30 H 1.09003 * 109.62622 * 186.45689 * 11 10 9 31 31 H 1.08999 * 109.62950 * 65.87970 * 11 10 9 32 32 H 0.97002 * 120.00194 * 180.02562 * 16 15 13 33 33 H 1.09000 * 109.62781 * 68.25550 * 21 12 11 34 34 H 1.09007 * 109.62956 * 188.83247 * 21 12 11 35 35 H 1.09005 * 109.49135 * 292.70628 * 22 9 8 36 36 H 1.09006 * 109.49151 * 52.78388 * 22 9 8 37 37 H 1.07997 * 120.85691 * 179.72018 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2782 -0.4971 1.0941 5 7 4.5948 -0.4969 1.0937 6 6 5.2914 -0.0323 0.0739 7 6 4.6626 0.4778 -1.0475 8 6 5.4749 1.0035 -2.2029 9 7 5.7388 -0.0863 -3.1519 10 6 6.7203 0.3239 -4.1649 11 6 6.8321 -0.7679 -5.2344 12 7 7.1232 -2.0465 -4.5683 13 6 8.1678 -2.8310 -4.9790 14 1 9.0258 -2.3813 -5.4562 15 6 8.1263 -4.2036 -4.7763 16 7 6.9809 -4.7954 -4.5115 17 14 9.6960 -5.2109 -4.8799 18 1 10.8397 -4.3150 -5.1875 19 1 9.9350 -5.8899 -3.5810 20 1 9.5614 -6.2285 -5.9530 21 6 6.2590 -2.4628 -3.4535 22 6 6.1733 -1.3017 -2.4503 23 6 3.2798 0.5054 -1.0952 24 1 2.7432 -0.8856 1.9481 25 1 6.3704 -0.0515 0.1150 26 1 6.4203 1.3993 -1.8320 27 1 4.9210 1.7966 -2.7053 28 1 7.6913 0.4707 -3.6921 29 1 6.3965 1.2556 -4.6287 30 1 7.6391 -0.5226 -5.9249 31 1 5.8911 -0.8447 -5.7790 32 1 6.9519 -5.7546 -4.3695 33 1 5.2639 -2.6995 -3.8303 34 1 6.6869 -3.3389 -2.9659 35 1 7.1520 -1.1322 -2.0013 36 1 5.4528 -1.5488 -1.6705 37 1 2.7631 0.9023 -1.9564 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721597587.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:11 Heat of formation + Delta-G solvation = 103.329755 kcal Electronic energy + Delta-G solvation = -20307.187162 eV Core-core repulsion = 17278.683905 eV Total energy + Delta-G solvation = -3028.503257 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.71584 -38.14481 -36.78498 -34.90644 -32.94219 -32.25634 -30.78832 -29.96463 -27.47865 -25.17036 -24.65783 -23.30596 -22.57545 -21.74237 -19.15430 -18.58678 -17.17957 -16.97359 -16.73349 -15.49834 -14.76633 -14.66875 -14.33736 -14.18026 -13.58406 -13.55276 -13.40525 -13.29528 -13.24162 -13.14256 -12.98410 -12.75106 -12.09968 -11.63916 -11.47969 -11.10298 -10.78555 -10.54591 -10.39034 -10.13724 -10.02699 -9.84483 -9.75424 -9.62418 -9.18182 -8.53883 -7.92278 -6.70297 -5.80886 -3.22483 0.36415 0.96015 2.40719 2.74635 3.35643 3.43771 3.45545 3.53421 3.63488 4.18215 4.37749 4.48502 4.49720 4.57711 4.73544 4.92753 5.26306 5.35926 5.38095 5.47411 5.58835 5.70454 5.80786 5.85780 6.00883 6.06671 6.13925 6.25284 6.28082 6.46981 6.62874 6.87608 7.18132 7.20802 7.45047 7.56969 7.62941 7.65159 7.78426 8.40551 9.18301 9.81663 10.39802 11.27876 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023708 B = 0.004412 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.733647 B = 6344.621042 C = 6686.142266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.262 3.738 3 C -0.085 4.085 4 C 0.148 3.852 5 N -0.480 5.480 6 C 0.138 3.862 7 C -0.123 4.123 8 C 0.092 3.908 9 N -0.528 5.528 10 C 0.045 3.955 11 C 0.148 3.852 12 N -0.595 5.595 13 C -0.253 4.253 14 H 0.067 0.933 15 C 0.002 3.998 16 N -0.903 5.903 17 Si 0.901 3.099 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.290 1.290 21 C 0.179 3.821 22 C 0.031 3.969 23 C -0.008 4.008 24 H 0.164 0.836 25 H 0.162 0.838 26 H 0.045 0.955 27 H 0.084 0.916 28 H 0.031 0.969 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.026 0.974 32 H 0.254 0.746 33 H 0.026 0.974 34 H 0.088 0.912 35 H 0.028 0.972 36 H 0.061 0.939 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 12.424 8.461 15.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.089 5.089 2 C -0.054 4.054 3 C -0.091 4.091 4 C -0.013 4.013 5 N -0.187 5.187 6 C -0.020 4.020 7 C -0.126 4.126 8 C -0.036 4.036 9 N -0.253 5.253 10 C -0.084 4.084 11 C 0.021 3.979 12 N -0.319 5.319 13 C -0.383 4.383 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.547 5.547 17 Si 0.731 3.269 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.217 1.217 21 C 0.053 3.947 22 C -0.098 4.098 23 C -0.037 4.037 24 H 0.182 0.818 25 H 0.179 0.821 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.106 0.894 35 H 0.046 0.954 36 H 0.079 0.921 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.540 11.799 8.945 15.809 hybrid contribution 1.450 -0.158 -0.393 1.511 sum -4.090 11.642 8.552 15.013 Atomic orbital electron populations 1.81265 1.11873 1.08453 1.07332 1.25387 0.92270 0.93787 0.93962 1.17007 0.85559 1.07854 0.98638 1.22925 0.89885 0.92671 0.95827 1.67825 1.07460 1.15547 1.27841 1.23042 1.00898 0.90251 0.87762 1.20787 0.94108 1.00511 0.97168 1.21085 0.97472 0.94664 0.90344 1.62190 1.46019 1.03518 1.13575 1.22655 0.92494 0.98891 0.94407 1.20978 0.98277 0.86228 0.92395 1.44154 1.33893 1.19491 1.34319 1.19227 0.94783 0.88017 1.36264 0.91569 1.25025 0.96538 0.96587 1.01464 1.70032 1.22996 1.09253 1.52427 0.86245 0.83138 0.80178 0.77345 1.20283 1.21542 1.21697 1.20941 0.93992 0.92948 0.86814 1.23114 0.96980 0.91996 0.97757 1.21535 0.93381 0.92794 0.95958 0.81845 0.82126 0.93687 0.89806 0.95108 0.91817 0.92491 0.95657 0.93624 0.95623 0.89356 0.95422 0.92117 0.83562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.52 18.54 41.84 0.78 -4.75 16 2 C 0.26 2.94 15.37 -22.47 -0.35 2.60 16 3 C -0.08 -0.85 5.74 -106.78 -0.61 -1.47 16 4 C 0.15 1.45 10.92 -17.11 -0.19 1.26 16 5 N -0.48 -5.50 10.35 -12.90 -0.13 -5.63 16 6 C 0.14 1.52 8.93 -17.47 -0.16 1.37 16 7 C -0.12 -1.33 4.13 -104.54 -0.43 -1.77 16 8 C 0.09 1.05 5.44 -4.98 -0.03 1.02 16 9 N -0.53 -8.26 4.77 -235.46 -1.12 -9.38 16 10 C 0.04 0.72 5.58 -3.70 -0.02 0.70 16 11 C 0.15 2.98 6.69 -3.60 -0.02 2.96 16 12 N -0.60 -14.59 3.03 -171.74 -0.52 -15.11 16 13 C -0.25 -6.82 9.63 -15.06 -0.15 -6.97 16 14 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 15 C 0.00 0.07 4.93 -17.43 -0.09 -0.02 16 16 N -0.90 -25.95 11.16 55.49 0.62 -25.33 16 17 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 C 0.18 4.19 5.45 -3.37 -0.02 4.17 16 22 C 0.03 0.55 4.80 -3.46 -0.02 0.53 16 23 C -0.01 -0.08 9.58 -38.86 -0.37 -0.46 16 24 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 25 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 26 H 0.05 0.48 8.03 -51.93 -0.42 0.06 16 27 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.85 8.11 -51.93 -0.42 0.43 16 30 H 0.06 1.10 7.95 -51.93 -0.41 0.69 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 2.32 6.12 -51.93 -0.32 2.00 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 1.02 5.54 -51.93 -0.29 0.73 16 37 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 312.74 15.07 4.71 4.71 Total: -1.00 -30.64 312.74 -7.93 -38.57 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -4.79 Total: -3.34 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -2.44 Total: 3.93 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: -0.38 Total: -60.20 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.64 -7.93 -38.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721597587.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.900 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds