Wall clock time and date at job start Mon Mar 30 2020 04:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39619 * 120.56797 * 294.47559 * 3 2 1 5 5 N 1.31662 * 120.55813 * 179.97438 * 4 3 2 6 6 C 1.31949 * 121.88321 * 0.02562 * 5 4 3 7 7 C 1.38313 * 121.09610 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.34322 * 180.02562 * 7 6 5 9 9 N 1.46899 * 109.47342 * 90.00286 * 8 7 6 10 10 C 1.46895 * 110.99989 * 190.00093 * 9 8 7 11 11 C 1.53241 * 109.33538 * 187.25118 * 10 9 8 12 12 N 1.47082 * 108.52509 * 306.16899 * 11 10 9 13 13 C 1.36935 * 120.87800 * 231.18634 * 12 11 10 14 14 H 1.07994 * 120.00243 * 27.12925 * 13 12 11 15 15 C 1.38815 * 119.99552 * 206.84012 * 13 12 11 16 16 N 1.31614 * 119.99986 * 17.18837 * 15 13 12 17 17 Si 1.86797 * 120.00057 * 197.17547 * 15 13 12 18 18 H 1.48508 * 109.47149 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47196 * 120.00464 * 17 15 13 20 20 H 1.48497 * 109.47565 * 240.00842 * 17 15 13 21 21 C 1.47072 * 118.23374 * 51.45730 * 12 11 10 22 22 C 1.46908 * 110.99894 * 314.30181 * 9 8 7 23 23 C 1.38382 * 119.31140 * 0.27954 * 7 6 5 24 24 H 1.07999 * 119.72505 * 359.97438 * 4 3 2 25 25 H 1.08002 * 119.45178 * 180.02562 * 6 5 4 26 26 H 1.09004 * 109.46889 * 329.99981 * 8 7 6 27 27 H 1.08999 * 109.46899 * 210.00209 * 8 7 6 28 28 H 1.08994 * 109.49506 * 67.29451 * 10 9 8 29 29 H 1.08997 * 109.49438 * 307.21030 * 10 9 8 30 30 H 1.09003 * 109.62622 * 186.45689 * 11 10 9 31 31 H 1.08999 * 109.62950 * 65.87970 * 11 10 9 32 32 H 0.97002 * 120.00194 * 180.02562 * 16 15 13 33 33 H 1.09000 * 109.62781 * 68.25550 * 21 12 11 34 34 H 1.09007 * 109.62956 * 188.83247 * 21 12 11 35 35 H 1.09005 * 109.49135 * 292.70628 * 22 9 8 36 36 H 1.09006 * 109.49151 * 52.78388 * 22 9 8 37 37 H 1.07997 * 120.85691 * 179.72018 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2782 -0.4971 1.0941 5 7 4.5948 -0.4969 1.0937 6 6 5.2914 -0.0323 0.0739 7 6 4.6626 0.4778 -1.0475 8 6 5.4749 1.0035 -2.2029 9 7 5.7388 -0.0863 -3.1519 10 6 6.7203 0.3239 -4.1649 11 6 6.8321 -0.7679 -5.2344 12 7 7.1232 -2.0465 -4.5683 13 6 8.1678 -2.8310 -4.9790 14 1 9.0258 -2.3813 -5.4562 15 6 8.1263 -4.2036 -4.7763 16 7 6.9809 -4.7954 -4.5115 17 14 9.6960 -5.2109 -4.8799 18 1 10.8397 -4.3150 -5.1875 19 1 9.9350 -5.8899 -3.5810 20 1 9.5614 -6.2285 -5.9530 21 6 6.2590 -2.4628 -3.4535 22 6 6.1733 -1.3017 -2.4503 23 6 3.2798 0.5054 -1.0952 24 1 2.7432 -0.8856 1.9481 25 1 6.3704 -0.0515 0.1150 26 1 6.4203 1.3993 -1.8320 27 1 4.9210 1.7966 -2.7053 28 1 7.6913 0.4707 -3.6921 29 1 6.3965 1.2556 -4.6287 30 1 7.6391 -0.5226 -5.9249 31 1 5.8911 -0.8447 -5.7790 32 1 6.9519 -5.7546 -4.3695 33 1 5.2639 -2.6995 -3.8303 34 1 6.6869 -3.3389 -2.9659 35 1 7.1520 -1.1322 -2.0013 36 1 5.4528 -1.5488 -1.6705 37 1 2.7631 0.9023 -1.9564 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721597587.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:11 Heat of formation + Delta-G solvation = 83.179267 kcal Electronic energy + Delta-G solvation = -20308.060952 eV Core-core repulsion = 17278.683905 eV Total energy + Delta-G solvation = -3029.377048 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.56867 -39.51036 -37.75102 -36.43137 -34.13103 -33.38657 -32.29769 -31.53987 -28.88883 -26.55957 -25.56776 -24.65669 -24.14003 -22.93227 -20.75792 -19.48748 -18.68023 -17.93892 -17.71653 -17.06353 -16.32421 -15.92913 -15.50348 -15.36116 -15.25661 -14.88836 -14.65221 -14.45943 -14.30511 -14.14009 -14.07103 -13.84366 -13.23688 -13.16567 -12.96134 -12.61773 -12.54639 -12.28966 -12.02407 -11.87596 -11.59017 -11.41363 -10.84441 -10.59694 -10.56381 -10.05316 -9.17360 -8.65347 -7.86210 -5.30748 -0.45361 0.15925 1.46943 1.49069 1.51520 1.59234 1.87008 2.52224 2.66846 2.77493 3.20888 3.30687 3.43078 3.68563 3.73160 3.78318 3.92690 4.10618 4.34491 4.40677 4.42948 4.58715 4.66856 4.73589 4.75528 4.86484 4.94434 4.95252 5.08071 5.20089 5.24390 5.41272 5.48869 5.63721 5.71122 6.19885 6.29000 6.33156 6.39547 6.82951 7.15305 7.86923 8.40140 9.20397 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023708 B = 0.004412 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.733647 B = 6344.621042 C = 6686.142266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.286 3.714 3 C -0.088 4.088 4 C 0.154 3.846 5 N -0.500 5.500 6 C 0.134 3.866 7 C -0.132 4.132 8 C 0.098 3.902 9 N -0.539 5.539 10 C 0.057 3.943 11 C 0.141 3.859 12 N -0.614 5.614 13 C -0.261 4.261 14 H 0.069 0.931 15 C -0.051 4.051 16 N -0.937 5.937 17 Si 0.965 3.035 18 H -0.265 1.265 19 H -0.290 1.290 20 H -0.294 1.294 21 C 0.185 3.815 22 C 0.054 3.946 23 C -0.003 4.003 24 H 0.187 0.813 25 H 0.168 0.832 26 H 0.061 0.939 27 H 0.110 0.890 28 H 0.031 0.969 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.014 0.986 32 H 0.249 0.751 33 H -0.008 1.008 34 H 0.052 0.948 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.217 14.384 9.034 17.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.030 4.030 3 C -0.093 4.093 4 C -0.007 4.007 5 N -0.207 5.207 6 C -0.023 4.023 7 C -0.135 4.135 8 C -0.030 4.030 9 N -0.264 5.264 10 C -0.072 4.072 11 C 0.015 3.985 12 N -0.339 5.339 13 C -0.391 4.391 14 H 0.087 0.913 15 C -0.246 4.246 16 N -0.584 5.584 17 Si 0.794 3.206 18 H -0.189 1.189 19 H -0.217 1.217 20 H -0.221 1.221 21 C 0.059 3.941 22 C -0.076 4.076 23 C -0.031 4.031 24 H 0.204 0.796 25 H 0.186 0.814 26 H 0.079 0.921 27 H 0.128 0.872 28 H 0.049 0.951 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.032 0.968 32 H 0.058 0.942 33 H 0.010 0.990 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.090 0.910 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.955 13.808 9.517 17.487 hybrid contribution 1.233 -0.718 -0.593 1.545 sum -3.722 13.090 8.925 16.274 Atomic orbital electron populations 1.81295 1.12996 1.09946 1.08650 1.25423 0.92200 0.92568 0.92764 1.16981 0.84800 1.08526 0.99040 1.23302 0.89549 0.91524 0.96320 1.67877 1.08129 1.16371 1.28320 1.23237 1.01418 0.89799 0.87821 1.20746 0.94272 1.01343 0.97103 1.21149 0.98655 0.93421 0.89730 1.62073 1.45549 1.04152 1.14659 1.22475 0.92992 0.98358 0.93377 1.21172 0.97710 0.85720 0.93868 1.44448 1.33589 1.20610 1.35215 1.19583 0.95590 0.88581 1.35381 0.91300 1.25769 0.99188 0.97698 1.01986 1.70197 1.24982 1.09051 1.54152 0.85239 0.80081 0.78537 0.76793 1.18898 1.21722 1.22125 1.20687 0.91575 0.94247 0.87564 1.22663 0.97442 0.91338 0.96110 1.21735 0.93287 0.91871 0.96200 0.79631 0.81447 0.92112 0.87235 0.95071 0.88015 0.92112 0.96836 0.94200 0.98970 0.92977 0.95489 0.90969 0.82121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -11.66 18.54 19.00 0.35 -11.31 16 2 C 0.29 5.97 15.37 88.33 1.36 7.33 16 3 C -0.09 -1.58 5.74 -21.27 -0.12 -1.70 16 4 C 0.15 2.69 10.92 85.05 0.93 3.62 16 5 N -0.50 -10.45 10.35 -194.71 -2.01 -12.47 16 6 C 0.13 2.66 8.93 84.69 0.76 3.42 16 7 C -0.13 -2.48 4.13 -19.81 -0.08 -2.56 16 8 C 0.10 1.84 5.44 85.56 0.47 2.30 16 9 N -0.54 -15.47 4.77 -898.87 -4.29 -19.76 16 10 C 0.06 1.66 5.58 86.38 0.48 2.14 16 11 C 0.14 5.56 6.69 86.35 0.58 6.13 16 12 N -0.61 -30.42 3.03 -697.26 -2.11 -32.53 16 13 C -0.26 -14.20 9.63 84.03 0.81 -13.39 16 14 H 0.07 3.63 7.88 -2.91 -0.02 3.60 16 15 C -0.05 -2.85 4.93 84.86 0.42 -2.43 16 16 N -0.94 -55.70 11.16 21.65 0.24 -55.46 16 17 Si 0.97 44.50 29.59 68.60 2.03 46.53 16 18 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 20 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 21 C 0.19 8.88 5.45 86.50 0.47 9.36 16 22 C 0.05 1.88 4.80 86.53 0.42 2.29 16 23 C 0.00 -0.05 9.58 22.74 0.22 0.17 16 24 H 0.19 2.28 8.06 -2.91 -0.02 2.25 16 25 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 26 H 0.06 1.02 8.03 -2.38 -0.02 1.00 16 27 H 0.11 1.58 8.09 -2.39 -0.02 1.56 16 28 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.10 2.25 8.11 -2.39 -0.02 2.23 16 30 H 0.06 2.30 7.95 -2.39 -0.02 2.28 16 31 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 33 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 34 H 0.05 2.85 6.12 -2.38 -0.01 2.83 16 35 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.07 2.34 5.54 -2.38 -0.01 2.33 16 37 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -67.82 312.74 1.98 -65.84 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: 1.07 Total: 2.47 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 6.70 Total: 16.69 kcal Atomic # 7 Polarization: -123.71 SS G_CDS: -7.82 Total: -131.53 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -67.82 1.98 -65.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721597587.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.019 kcal (2) G-P(sol) polarization free energy of solvation -67.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds