Wall clock time and date at job start Mon Mar 30 2020 05:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47081 * 2 1 4 4 N 1.46901 * 109.47021 * 180.02562 * 3 2 1 5 5 C 1.46904 * 110.99986 * 180.02562 * 4 3 2 6 6 C 1.53775 * 113.61537 * 154.99425 * 5 4 3 7 7 C 1.53781 * 87.08025 * 139.97844 * 6 5 4 8 8 N 1.46496 * 113.61473 * 89.12074 * 7 6 5 9 9 C 1.34777 * 120.00266 * 156.53203 * 8 7 6 10 10 O 1.21274 * 120.00135 * 0.27234 * 9 8 7 11 11 C 1.50706 * 119.99766 * 179.97438 * 9 8 7 12 12 S 1.81003 * 109.46851 * 179.97438 * 11 9 8 13 13 C 1.76196 * 99.99843 * 180.02562 * 12 11 9 14 14 H 1.07998 * 120.00031 * 359.97438 * 13 12 11 15 15 C 1.38802 * 119.99637 * 180.02562 * 13 12 11 16 16 N 1.31628 * 120.00514 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99567 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46941 * 90.00284 * 17 15 13 19 19 H 1.48505 * 109.46872 * 209.99797 * 17 15 13 20 20 H 1.48493 * 109.47194 * 329.99916 * 17 15 13 21 21 C 1.53777 * 87.17201 * 334.52537 * 7 6 5 22 22 H 1.08998 * 109.46815 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46869 * 300.00105 * 1 2 3 24 24 H 1.09002 * 109.47032 * 59.99611 * 1 2 3 25 25 H 1.08997 * 109.46886 * 240.00289 * 2 1 3 26 26 H 1.08994 * 109.47434 * 119.99909 * 2 1 3 27 27 H 1.09004 * 109.47355 * 60.00193 * 3 2 1 28 28 H 1.09002 * 109.47504 * 300.00099 * 3 2 1 29 29 H 1.00900 * 110.99694 * 303.94812 * 4 3 2 30 30 H 1.08997 * 112.84694 * 23.79953 * 5 4 3 31 31 H 1.09007 * 113.61388 * 25.43207 * 6 5 4 32 32 H 1.09000 * 113.69535 * 254.54079 * 6 5 4 33 33 H 1.09004 * 113.61402 * 219.93761 * 7 6 5 34 34 H 0.96999 * 119.99691 * 336.52188 * 8 7 6 35 35 H 1.09000 * 109.47161 * 299.99737 * 11 9 8 36 36 H 1.09001 * 109.46740 * 59.99879 * 11 9 8 37 37 H 0.96995 * 120.00407 * 179.97438 * 16 15 13 38 38 H 1.09002 * 113.61092 * 140.02079 * 21 7 6 39 39 H 1.09004 * 113.61533 * 270.92204 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0356 2.8140 0.0000 6 6 5.4487 2.9311 0.5950 7 6 5.7535 3.9352 -0.5291 8 7 5.4363 5.3220 -0.1792 9 6 6.0536 6.3361 -0.8172 10 8 6.8679 6.1007 -1.6844 11 6 5.7267 7.7627 -0.4575 12 16 6.7125 8.8838 -1.4810 13 6 6.1465 10.4355 -0.8674 14 1 5.4025 10.4680 -0.0852 15 6 6.6560 11.6160 -1.3900 16 7 7.5617 11.5765 -2.3444 17 14 6.0554 13.2611 -0.7400 18 1 6.9108 13.6862 0.3969 19 1 6.1280 14.2768 -1.8209 20 1 4.6500 13.1281 -0.2794 21 6 4.6526 3.2387 -1.3461 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6768 1.9564 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 3.8709 0.9163 0.7806 30 1 3.3294 3.5382 0.4060 31 1 6.0286 2.0106 0.5274 32 1 5.4691 3.3719 1.5917 33 1 6.7504 3.8238 -0.9556 34 1 4.7820 5.5103 0.5116 35 1 4.6669 7.9478 -0.6324 36 1 5.9569 7.9341 0.5940 37 1 7.9175 12.4015 -2.7099 38 1 4.0293 3.9281 -1.9156 39 1 5.0153 2.4022 -1.9435 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722024021.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:21 Heat of formation + Delta-G solvation = -30.466360 kcal Electronic energy + Delta-G solvation = -17982.702411 eV Core-core repulsion = 15051.548519 eV Total energy + Delta-G solvation = -2931.153892 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.12312 -38.25917 -36.04845 -33.29532 -32.42823 -31.64463 -28.98915 -26.05311 -25.72527 -25.45190 -23.07857 -21.74629 -20.74869 -19.27719 -17.84658 -16.65895 -16.21242 -16.01730 -15.43313 -15.32893 -14.80504 -14.79839 -14.39881 -13.92330 -13.54199 -13.15624 -12.82929 -12.70671 -12.53447 -12.44684 -12.40122 -11.78554 -11.69649 -11.41543 -11.09644 -11.06499 -11.02511 -10.76822 -10.68157 -10.44639 -9.81250 -9.39888 -9.07012 -8.90505 -8.69571 -8.23485 -6.49874 -6.21565 -3.92126 3.01950 3.07824 3.22259 3.27750 3.31808 3.69935 3.84655 4.20383 4.28192 4.41457 4.61727 4.69693 4.84914 4.85436 4.99798 5.13382 5.14208 5.17468 5.29538 5.40021 5.44504 5.55420 5.58983 5.66000 5.72202 5.79260 5.87855 5.89434 5.92874 5.98606 6.07332 6.13671 6.65318 6.84253 7.05232 7.59496 7.71479 8.35185 8.62284 9.23640 10.85843 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034655 B = 0.002802 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.759348 B = 9991.436956 C =10487.525755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C 0.056 3.944 4 N -0.678 5.678 5 C 0.058 3.942 6 C -0.149 4.149 7 C 0.124 3.876 8 N -0.722 5.722 9 C 0.534 3.466 10 O -0.515 6.515 11 C -0.153 4.153 12 S -0.059 6.059 13 C -0.536 4.536 14 H 0.072 0.928 15 C 0.073 3.927 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 C -0.136 4.136 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.028 0.972 28 H 0.072 0.928 29 H 0.339 0.661 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.397 0.603 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.068 0.932 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.259 -20.991 8.110 25.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.073 4.073 4 N -0.309 5.309 5 C -0.052 4.052 6 C -0.188 4.188 7 C 0.018 3.982 8 N -0.376 5.376 9 C 0.320 3.680 10 O -0.388 6.388 11 C -0.304 4.304 12 S 0.167 5.833 13 C -0.684 4.684 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.503 5.503 17 Si 0.745 3.255 18 H -0.203 1.203 19 H -0.207 1.207 20 H -0.197 1.197 21 C -0.176 4.176 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.158 0.842 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.122 0.878 34 H 0.230 0.770 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.723 -21.340 5.850 24.169 hybrid contribution -1.931 1.703 2.703 3.733 sum -11.654 -19.637 8.553 24.384 Atomic orbital electron populations 1.21738 0.95572 1.01778 1.01904 1.21510 0.95637 0.96423 1.02513 1.22072 0.87744 0.96929 1.00564 1.60633 1.07374 1.13425 1.49472 1.23177 0.94477 0.89555 0.98025 1.23594 0.96459 1.00144 0.98574 1.21608 0.99973 0.80673 0.95985 1.45728 1.45217 1.04794 1.41845 1.20320 0.80152 0.86516 0.80974 1.90700 1.32876 1.84805 1.30456 1.23536 1.05874 0.95086 1.05913 1.85409 1.52699 0.96909 1.48271 1.22865 1.28587 0.91588 1.25353 0.90949 1.24997 0.94745 0.99130 0.94748 1.70014 1.26922 1.28409 1.24911 0.86165 0.79069 0.81713 0.78528 1.20271 1.20741 1.19721 1.23575 0.97632 1.00068 0.96349 0.92545 0.92872 0.92530 0.91080 0.92272 0.95391 0.90946 0.84215 0.91047 0.88224 0.90966 0.87765 0.76970 0.89241 0.89241 0.92172 0.91290 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.12 -0.78 6.19 -26.73 -0.17 -0.95 16 3 C 0.06 0.42 5.53 -3.82 -0.02 0.40 16 4 N -0.68 -5.40 6.56 -105.72 -0.69 -6.09 16 5 C 0.06 0.50 4.03 -66.76 -0.27 0.23 16 6 C -0.15 -1.26 7.39 -25.92 -0.19 -1.45 16 7 C 0.12 1.48 4.29 -67.12 -0.29 1.19 16 8 N -0.72 -9.66 5.26 -53.02 -0.28 -9.94 16 9 C 0.53 10.00 7.85 -10.98 -0.09 9.91 16 10 O -0.51 -11.76 15.48 5.56 0.09 -11.68 16 11 C -0.15 -3.10 6.16 36.01 0.22 -2.87 16 12 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 13 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 14 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 15 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 16 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 17 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 C -0.14 -1.49 7.70 -25.78 -0.20 -1.69 16 22 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 23 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.03 0.20 8.13 -51.93 -0.42 -0.22 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.34 2.27 8.54 -39.29 -0.34 1.94 16 30 H 0.07 0.63 7.86 -51.93 -0.41 0.22 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.10 1.45 7.50 -51.93 -0.39 1.06 16 34 H 0.40 4.17 8.70 -40.82 -0.36 3.81 16 35 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 36 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 37 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 340.59 15.07 5.13 5.13 Total: -1.00 -33.40 340.59 -9.22 -42.62 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.53 Total: 1.63 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -0.43 Total: -8.75 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: -0.24 Total: -41.54 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.40 -9.22 -42.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722024021.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.152 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds