Wall clock time and date at job start Mon Mar 30 2020 05:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47081 * 2 1 4 4 N 1.46901 * 109.47021 * 180.02562 * 3 2 1 5 5 C 1.46904 * 110.99986 * 180.02562 * 4 3 2 6 6 C 1.53775 * 113.61537 * 154.99425 * 5 4 3 7 7 C 1.53781 * 87.08025 * 139.97844 * 6 5 4 8 8 N 1.46496 * 113.61473 * 89.12074 * 7 6 5 9 9 C 1.34777 * 120.00266 * 156.53203 * 8 7 6 10 10 O 1.21274 * 120.00135 * 0.27234 * 9 8 7 11 11 C 1.50706 * 119.99766 * 179.97438 * 9 8 7 12 12 S 1.81003 * 109.46851 * 179.97438 * 11 9 8 13 13 C 1.76196 * 99.99843 * 180.02562 * 12 11 9 14 14 H 1.07998 * 120.00031 * 359.97438 * 13 12 11 15 15 C 1.38802 * 119.99637 * 180.02562 * 13 12 11 16 16 N 1.31628 * 120.00514 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99567 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46941 * 90.00284 * 17 15 13 19 19 H 1.48505 * 109.46872 * 209.99797 * 17 15 13 20 20 H 1.48493 * 109.47194 * 329.99916 * 17 15 13 21 21 C 1.53777 * 87.17201 * 334.52537 * 7 6 5 22 22 H 1.08998 * 109.46815 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46869 * 300.00105 * 1 2 3 24 24 H 1.09002 * 109.47032 * 59.99611 * 1 2 3 25 25 H 1.08997 * 109.46886 * 240.00289 * 2 1 3 26 26 H 1.08994 * 109.47434 * 119.99909 * 2 1 3 27 27 H 1.09004 * 109.47355 * 60.00193 * 3 2 1 28 28 H 1.09002 * 109.47504 * 300.00099 * 3 2 1 29 29 H 1.00900 * 110.99694 * 303.94812 * 4 3 2 30 30 H 1.08997 * 112.84694 * 23.79953 * 5 4 3 31 31 H 1.09007 * 113.61388 * 25.43207 * 6 5 4 32 32 H 1.09000 * 113.69535 * 254.54079 * 6 5 4 33 33 H 1.09004 * 113.61402 * 219.93761 * 7 6 5 34 34 H 0.96999 * 119.99691 * 336.52188 * 8 7 6 35 35 H 1.09000 * 109.47161 * 299.99737 * 11 9 8 36 36 H 1.09001 * 109.46740 * 59.99879 * 11 9 8 37 37 H 0.96995 * 120.00407 * 179.97438 * 16 15 13 38 38 H 1.09002 * 113.61092 * 140.02079 * 21 7 6 39 39 H 1.09004 * 113.61533 * 270.92204 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0356 2.8140 0.0000 6 6 5.4487 2.9311 0.5950 7 6 5.7535 3.9352 -0.5291 8 7 5.4363 5.3220 -0.1792 9 6 6.0536 6.3361 -0.8172 10 8 6.8679 6.1007 -1.6844 11 6 5.7267 7.7627 -0.4575 12 16 6.7125 8.8838 -1.4810 13 6 6.1465 10.4355 -0.8674 14 1 5.4025 10.4680 -0.0852 15 6 6.6560 11.6160 -1.3900 16 7 7.5617 11.5765 -2.3444 17 14 6.0554 13.2611 -0.7400 18 1 6.9108 13.6862 0.3969 19 1 6.1280 14.2768 -1.8209 20 1 4.6500 13.1281 -0.2794 21 6 4.6526 3.2387 -1.3461 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6768 1.9564 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 3.8709 0.9163 0.7806 30 1 3.3294 3.5382 0.4060 31 1 6.0286 2.0106 0.5274 32 1 5.4691 3.3719 1.5917 33 1 6.7504 3.8238 -0.9556 34 1 4.7820 5.5103 0.5116 35 1 4.6669 7.9478 -0.6324 36 1 5.9569 7.9341 0.5940 37 1 7.9175 12.4015 -2.7099 38 1 4.0293 3.9281 -1.9156 39 1 5.0153 2.4022 -1.9435 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722024021.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:20 Heat of formation + Delta-G solvation = -54.674093 kcal Electronic energy + Delta-G solvation = -17983.752137 eV Core-core repulsion = 15051.548519 eV Total energy + Delta-G solvation = -2932.203618 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.22464 -39.47574 -36.75968 -34.59604 -34.40135 -32.46238 -30.48017 -27.68611 -26.79499 -26.39061 -23.92404 -22.38450 -21.99789 -20.25292 -19.82683 -17.99765 -17.20428 -16.91830 -16.88089 -16.40756 -16.35018 -15.94944 -15.75596 -15.10074 -14.65657 -14.46927 -14.14897 -13.81014 -13.37762 -13.33406 -13.17095 -13.09638 -12.96798 -12.87968 -12.61879 -12.32644 -12.01652 -11.74127 -11.63893 -11.49002 -11.23840 -11.14584 -10.96712 -10.28173 -10.07442 -9.36760 -8.67419 -8.34913 -6.13244 1.26195 1.42448 1.46601 1.57069 1.58845 2.23819 2.28110 2.99119 3.21899 3.31439 3.51725 3.58883 3.90716 3.97836 4.08526 4.12161 4.23670 4.30157 4.46488 4.49532 4.59236 4.66262 4.83706 4.84450 4.85880 4.90087 5.00691 5.07495 5.14842 5.20414 5.32663 5.41346 5.41528 5.59197 6.13936 6.19507 6.49503 6.51653 7.06207 7.24482 8.74317 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034655 B = 0.002802 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.759348 B = 9991.436956 C =10487.525755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C 0.057 3.943 4 N -0.683 5.683 5 C 0.070 3.930 6 C -0.127 4.127 7 C 0.109 3.891 8 N -0.696 5.696 9 C 0.536 3.464 10 O -0.565 6.565 11 C -0.129 4.129 12 S -0.152 6.152 13 C -0.546 4.546 14 H 0.083 0.917 15 C 0.012 3.988 16 N -0.911 5.911 17 Si 1.000 3.000 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.258 1.258 21 C -0.138 4.138 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.034 0.966 28 H 0.059 0.941 29 H 0.350 0.650 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.415 0.585 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.271 0.729 38 H 0.051 0.949 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.101 -21.596 10.524 27.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.072 4.072 4 N -0.315 5.315 5 C -0.040 4.040 6 C -0.165 4.165 7 C 0.003 3.997 8 N -0.349 5.349 9 C 0.322 3.678 10 O -0.442 6.442 11 C -0.280 4.280 12 S 0.075 5.925 13 C -0.694 4.694 14 H 0.101 0.899 15 C -0.193 4.193 16 N -0.548 5.548 17 Si 0.821 3.179 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.182 1.182 21 C -0.178 4.178 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.170 0.830 30 H 0.095 0.905 31 H 0.131 0.869 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.252 0.748 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.606 -21.994 8.312 26.221 hybrid contribution -1.396 1.736 1.956 2.965 sum -13.002 -20.258 10.267 26.170 Atomic orbital electron populations 1.21734 0.95114 1.02213 1.01869 1.21467 0.96001 0.95668 1.02513 1.22059 0.87366 0.97556 1.00196 1.60538 1.07791 1.12940 1.50230 1.23022 0.94785 0.90230 0.96005 1.23498 0.95930 0.99219 0.97894 1.21791 0.99170 0.80204 0.98525 1.45433 1.44102 1.04487 1.40858 1.20089 0.80039 0.86881 0.80809 1.90689 1.35363 1.85316 1.32878 1.23370 1.05249 0.94178 1.05212 1.85605 1.55679 0.99728 1.51525 1.23201 1.28774 0.91846 1.25551 0.89864 1.26152 0.94682 1.03644 0.94807 1.70183 1.28450 1.29639 1.26508 0.84937 0.79099 0.75893 0.77939 1.19254 1.20332 1.18183 1.23562 0.97232 0.99597 0.97397 0.91910 0.92511 0.92966 0.91914 0.91393 0.94778 0.92250 0.82974 0.90451 0.86869 0.89303 0.90157 0.74790 0.87254 0.87044 0.91988 0.93013 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 71.98 0.71 -0.76 16 2 C -0.12 -1.29 6.19 30.60 0.19 -1.10 16 3 C 0.06 0.74 5.53 86.30 0.48 1.22 16 4 N -0.68 -9.22 6.56 -488.38 -3.21 -12.43 16 5 C 0.07 1.04 4.03 45.53 0.18 1.23 16 6 C -0.13 -1.78 7.39 31.12 0.23 -1.55 16 7 C 0.11 2.48 4.29 45.52 0.20 2.68 16 8 N -0.70 -17.54 5.26 -440.05 -2.32 -19.85 16 9 C 0.54 19.91 7.85 87.66 0.69 20.60 16 10 O -0.56 -26.60 15.48 -3.01 -0.05 -26.64 16 11 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 12 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 13 C -0.55 -31.24 9.50 67.96 0.65 -30.60 16 14 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 15 C 0.01 0.68 5.49 84.86 0.47 1.14 16 16 N -0.91 -56.27 13.22 21.65 0.29 -55.99 16 17 Si 1.00 43.63 29.55 68.60 2.03 45.65 16 18 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 19 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 20 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 21 C -0.14 -2.90 7.70 31.21 0.24 -2.66 16 22 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 23 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.03 0.41 8.13 -2.39 -0.02 0.39 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.35 3.60 8.54 -89.69 -0.77 2.84 16 30 H 0.08 1.11 7.86 -2.39 -0.02 1.09 16 31 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 2.26 7.50 -2.39 -0.02 2.24 16 34 H 0.41 7.51 8.70 -92.71 -0.81 6.70 16 35 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 36 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 37 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 38 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -74.78 340.59 -0.48 -75.27 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -0.54 Total: 18.15 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 4.47 Total: -14.47 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -5.23 Total: -88.27 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.05 Total: -26.64 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -74.78 -0.48 -75.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722024021.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.594 kcal (2) G-P(sol) polarization free energy of solvation -74.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds