Wall clock time and date at job start Mon Mar 30 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46898 * 111.00008 * 2 1 4 4 H 1.08996 * 109.47141 * 324.99491 * 3 2 1 5 5 C 1.52998 * 109.47614 * 84.99834 * 3 2 1 6 6 C 1.52995 * 109.47496 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46928 * 299.99994 * 6 5 3 8 8 C 1.52998 * 109.47186 * 60.00079 * 7 6 5 9 9 C 1.53001 * 109.47002 * 204.99945 * 3 2 1 10 10 H 1.09000 * 109.47219 * 300.00015 * 9 3 2 11 11 N 1.46503 * 109.47206 * 59.99877 * 9 3 2 12 12 C 1.34781 * 119.99634 * 204.99980 * 11 9 3 13 13 O 1.21274 * 120.00344 * 359.97438 * 12 11 9 14 14 C 1.50701 * 119.99423 * 179.97438 * 12 11 9 15 15 S 1.81001 * 109.46896 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99894 * 180.02562 * 15 14 12 17 17 H 1.07991 * 120.00323 * 359.97438 * 16 15 14 18 18 C 1.38805 * 119.99766 * 179.97438 * 16 15 14 19 19 N 1.31633 * 120.00034 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16 22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16 23 23 H 1.48490 * 109.46901 * 150.00205 * 20 18 16 24 24 H 1.09005 * 109.47452 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47816 * 300.00219 * 1 2 3 26 26 H 1.09005 * 109.47406 * 60.00245 * 1 2 3 27 27 H 1.00894 * 111.00283 * 236.03889 * 2 1 3 28 28 H 1.09000 * 109.46725 * 59.99913 * 5 3 2 29 29 H 1.08998 * 109.47062 * 300.00103 * 5 3 2 30 30 H 1.08995 * 109.47381 * 180.02562 * 6 5 3 31 31 H 1.08996 * 109.47333 * 59.99612 * 6 5 3 32 32 H 1.09007 * 109.47231 * 299.99834 * 7 6 5 33 33 H 1.09003 * 109.47210 * 179.97438 * 7 6 5 34 34 H 1.09007 * 109.47406 * 180.02562 * 8 7 6 35 35 H 1.08996 * 109.47360 * 60.00206 * 8 7 6 36 36 H 0.96994 * 119.99836 * 25.00100 * 11 9 3 37 37 H 1.09001 * 109.47454 * 60.00304 * 14 12 11 38 38 H 1.09003 * 109.47322 * 299.99933 * 14 12 11 39 39 H 0.97001 * 119.99662 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3397 2.0122 -0.5895 5 6 2.0608 1.8927 1.4369 6 6 2.6085 3.3213 1.4369 7 6 4.0117 3.3294 0.8270 8 6 3.9463 2.8082 -0.6099 9 6 3.3986 1.3790 -0.6096 10 1 4.0543 0.7381 -0.0202 11 7 3.3361 0.8799 -1.9856 12 6 4.4259 0.3237 -2.5509 13 8 5.4584 0.2368 -1.9207 14 6 4.3613 -0.1902 -3.9661 15 16 5.9706 -0.8738 -4.4337 16 6 5.6185 -1.3846 -6.0829 17 1 4.6332 -1.2307 -6.4972 18 6 6.6077 -1.9849 -6.8496 19 7 7.8086 -2.1730 -6.3445 20 14 6.2343 -2.5271 -8.5978 21 1 5.7402 -3.9274 -8.5869 22 1 5.1953 -1.6401 -9.1799 23 1 7.4705 -2.4448 -9.4162 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3635 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8305 -0.5262 -0.7812 28 1 2.7164 1.2518 2.0264 29 1 1.0611 1.8873 1.8712 30 1 2.6555 3.6925 2.4606 31 1 1.9525 3.9619 0.8475 32 1 4.6677 2.6888 1.4164 33 1 4.4017 4.3473 0.8265 34 1 4.9461 2.8136 -1.0443 35 1 3.2903 3.4488 -1.1993 36 1 2.5104 0.9498 -2.4897 37 1 4.1046 0.6283 -4.6386 38 1 3.6020 -0.9692 -4.0355 39 1 8.4998 -2.5929 -6.8802 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722025033.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:35 Heat of formation + Delta-G solvation = -55.658666 kcal Electronic energy + Delta-G solvation = -18957.049403 eV Core-core repulsion = 16024.803091 eV Total energy + Delta-G solvation = -2932.246312 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.08008 -38.16208 -35.07234 -33.97774 -32.43238 -30.45795 -29.70990 -28.01884 -25.48801 -25.07655 -22.66345 -21.69261 -20.38773 -19.93430 -17.90292 -16.80658 -16.31880 -15.46850 -15.31956 -14.88799 -14.80821 -14.62624 -14.22915 -14.04093 -13.55917 -13.32070 -12.99863 -12.89607 -12.60081 -12.50268 -11.91365 -11.88268 -11.48588 -11.29559 -11.06862 -11.02967 -10.90919 -10.81145 -10.75140 -10.34252 -9.81688 -9.37907 -9.07460 -8.90423 -8.68265 -8.24085 -6.50303 -6.22125 -3.92660 3.00791 3.07786 3.21941 3.27372 3.31216 3.68266 3.90787 4.19957 4.41613 4.71720 4.82138 4.96664 5.01566 5.12119 5.12550 5.13226 5.18235 5.25419 5.32562 5.35339 5.55754 5.62718 5.66596 5.72244 5.84595 5.88143 5.88994 5.98767 6.02610 6.12062 6.17940 6.25572 6.63273 6.79535 7.13936 7.58923 7.66647 8.34597 8.60099 9.23205 10.85280 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032721 B = 0.003734 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.519551 B = 7496.545613 C = 8040.606454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.692 5.692 3 C 0.082 3.918 4 H 0.047 0.953 5 C -0.104 4.104 6 C -0.120 4.120 7 C -0.118 4.118 8 C -0.129 4.129 9 C 0.145 3.855 10 H 0.097 0.903 11 N -0.740 5.740 12 C 0.534 3.466 13 O -0.512 6.512 14 C -0.154 4.154 15 S -0.058 6.058 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.272 1.272 23 H -0.282 1.282 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.021 0.979 27 H 0.348 0.652 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.393 0.607 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.007 9.722 12.990 22.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.324 5.324 3 C -0.028 4.028 4 H 0.065 0.935 5 C -0.142 4.142 6 C -0.158 4.158 7 C -0.156 4.156 8 C -0.168 4.168 9 C 0.040 3.960 10 H 0.115 0.885 11 N -0.393 5.393 12 C 0.320 3.680 13 O -0.386 6.386 14 C -0.305 4.305 15 S 0.168 5.832 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.197 1.197 23 H -0.207 1.207 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.168 0.832 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.227 0.773 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.036 9.409 14.685 21.775 hybrid contribution -2.097 0.055 -3.100 3.743 sum -15.133 9.464 11.585 21.279 Atomic orbital electron populations 1.22239 0.87834 1.01930 1.00193 1.60368 1.07622 1.13574 1.50877 1.21815 0.94477 0.89520 0.96981 0.93513 1.21491 1.01498 0.95830 0.95412 1.21575 0.96732 0.96633 1.00907 1.21513 0.96969 1.01285 0.95800 1.21930 1.02327 0.95391 0.97129 1.21100 0.96333 0.95684 0.82888 0.88524 1.46146 1.14497 1.63779 1.14924 1.20295 0.82964 0.76447 0.88275 1.90704 1.29601 1.54650 1.63602 1.23543 1.08242 1.03827 0.94872 1.85405 1.05979 1.76112 1.15675 1.22869 1.00529 1.46184 0.98899 0.90974 1.24989 0.94425 0.95118 0.99004 1.70019 1.02444 1.40657 1.37131 0.86172 0.77968 0.79005 0.82380 1.20255 1.19718 1.20740 0.91373 0.91788 0.96084 0.83228 0.90851 0.91866 0.91674 0.92167 0.91451 0.91711 0.90717 0.92018 0.77344 0.89334 0.89306 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.50 60.06 0.63 0.86 16 2 N -0.69 -7.05 6.66 -114.01 -0.76 -7.80 16 3 C 0.08 0.80 2.04 -67.71 -0.14 0.66 16 4 H 0.05 0.43 7.80 -51.93 -0.40 0.02 16 5 C -0.10 -0.91 5.42 -26.73 -0.15 -1.05 16 6 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 7 C -0.12 -1.10 5.92 -26.73 -0.16 -1.25 16 8 C -0.13 -1.46 5.50 -26.70 -0.15 -1.61 16 9 C 0.15 1.75 2.02 -67.90 -0.14 1.61 16 10 H 0.10 1.43 7.58 -51.93 -0.39 1.04 16 11 N -0.74 -9.70 4.14 -53.78 -0.22 -9.92 16 12 C 0.53 9.77 7.81 -10.98 -0.09 9.69 16 13 O -0.51 -11.47 15.52 5.56 0.09 -11.38 16 14 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 15 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 16 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 17 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 20 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.48 7.44 -51.93 -0.39 0.10 16 26 H 0.02 0.16 8.06 -51.93 -0.42 -0.26 16 27 H 0.35 3.81 7.65 -39.29 -0.30 3.51 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.51 7.45 -51.93 -0.39 0.12 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.39 4.12 8.60 -40.82 -0.35 3.77 16 37 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 38 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 329.39 15.07 4.96 4.96 Total: -1.00 -32.89 329.39 -8.77 -41.65 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.41 Total: 3.37 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 0.08 Total: -8.02 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: -0.25 Total: -43.15 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.89 -8.77 -41.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722025033.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.005 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds