Wall clock time and date at job start Mon Mar 30 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46898 * 111.00008 * 2 1 4 4 H 1.08996 * 109.47141 * 324.99491 * 3 2 1 5 5 C 1.52998 * 109.47614 * 84.99834 * 3 2 1 6 6 C 1.52995 * 109.47496 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46928 * 299.99994 * 6 5 3 8 8 C 1.52998 * 109.47186 * 60.00079 * 7 6 5 9 9 C 1.53001 * 109.47002 * 204.99945 * 3 2 1 10 10 H 1.09000 * 109.47219 * 300.00015 * 9 3 2 11 11 N 1.46503 * 109.47206 * 59.99877 * 9 3 2 12 12 C 1.34781 * 119.99634 * 204.99980 * 11 9 3 13 13 O 1.21274 * 120.00344 * 359.97438 * 12 11 9 14 14 C 1.50701 * 119.99423 * 179.97438 * 12 11 9 15 15 S 1.81001 * 109.46896 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99894 * 180.02562 * 15 14 12 17 17 H 1.07991 * 120.00323 * 359.97438 * 16 15 14 18 18 C 1.38805 * 119.99766 * 179.97438 * 16 15 14 19 19 N 1.31633 * 120.00034 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16 22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16 23 23 H 1.48490 * 109.46901 * 150.00205 * 20 18 16 24 24 H 1.09005 * 109.47452 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47816 * 300.00219 * 1 2 3 26 26 H 1.09005 * 109.47406 * 60.00245 * 1 2 3 27 27 H 1.00894 * 111.00283 * 236.03889 * 2 1 3 28 28 H 1.09000 * 109.46725 * 59.99913 * 5 3 2 29 29 H 1.08998 * 109.47062 * 300.00103 * 5 3 2 30 30 H 1.08995 * 109.47381 * 180.02562 * 6 5 3 31 31 H 1.08996 * 109.47333 * 59.99612 * 6 5 3 32 32 H 1.09007 * 109.47231 * 299.99834 * 7 6 5 33 33 H 1.09003 * 109.47210 * 179.97438 * 7 6 5 34 34 H 1.09007 * 109.47406 * 180.02562 * 8 7 6 35 35 H 1.08996 * 109.47360 * 60.00206 * 8 7 6 36 36 H 0.96994 * 119.99836 * 25.00100 * 11 9 3 37 37 H 1.09001 * 109.47454 * 60.00304 * 14 12 11 38 38 H 1.09003 * 109.47322 * 299.99933 * 14 12 11 39 39 H 0.97001 * 119.99662 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3397 2.0122 -0.5895 5 6 2.0608 1.8927 1.4369 6 6 2.6085 3.3213 1.4369 7 6 4.0117 3.3294 0.8270 8 6 3.9463 2.8082 -0.6099 9 6 3.3986 1.3790 -0.6096 10 1 4.0543 0.7381 -0.0202 11 7 3.3361 0.8799 -1.9856 12 6 4.4259 0.3237 -2.5509 13 8 5.4584 0.2368 -1.9207 14 6 4.3613 -0.1902 -3.9661 15 16 5.9706 -0.8738 -4.4337 16 6 5.6185 -1.3846 -6.0829 17 1 4.6332 -1.2307 -6.4972 18 6 6.6077 -1.9849 -6.8496 19 7 7.8086 -2.1730 -6.3445 20 14 6.2343 -2.5271 -8.5978 21 1 5.7402 -3.9274 -8.5869 22 1 5.1953 -1.6401 -9.1799 23 1 7.4705 -2.4448 -9.4162 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3635 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8305 -0.5262 -0.7812 28 1 2.7164 1.2518 2.0264 29 1 1.0611 1.8873 1.8712 30 1 2.6555 3.6925 2.4606 31 1 1.9525 3.9619 0.8475 32 1 4.6677 2.6888 1.4164 33 1 4.4017 4.3473 0.8265 34 1 4.9461 2.8136 -1.0443 35 1 3.2903 3.4488 -1.1993 36 1 2.5104 0.9498 -2.4897 37 1 4.1046 0.6283 -4.6386 38 1 3.6020 -0.9692 -4.0355 39 1 8.4998 -2.5929 -6.8802 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722025033.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:35 Heat of formation + Delta-G solvation = -79.548356 kcal Electronic energy + Delta-G solvation = -18958.085338 eV Core-core repulsion = 16024.803091 eV Total energy + Delta-G solvation = -2933.282247 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.23152 -39.35679 -35.82500 -35.21273 -34.58716 -31.71456 -30.58831 -29.21032 -27.64939 -25.78950 -23.64467 -22.48906 -21.65280 -20.89060 -19.81300 -18.02255 -17.70053 -16.88540 -16.53661 -16.42714 -15.98573 -15.79686 -15.48578 -15.05882 -14.71611 -14.58302 -14.26062 -13.85884 -13.78816 -13.60447 -13.17627 -13.14718 -12.89385 -12.62305 -12.57846 -12.31089 -12.13710 -11.77164 -11.65558 -11.55961 -11.22390 -11.14659 -10.86630 -10.28053 -10.12526 -9.42083 -8.67182 -8.35120 -6.13290 1.26005 1.42201 1.46392 1.56762 1.59439 2.21618 2.27557 2.99117 3.13820 3.30787 3.55643 3.89551 3.97472 4.03109 4.17747 4.24783 4.28929 4.37896 4.45815 4.48210 4.49806 4.57672 4.64592 4.83130 4.93405 4.99550 5.05985 5.16467 5.18806 5.26780 5.33633 5.41192 5.45160 5.53584 6.07356 6.19200 6.32666 6.44787 7.06177 7.21854 8.74114 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032721 B = 0.003734 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.519551 B = 7496.545613 C = 8040.606454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.707 5.707 3 C 0.091 3.909 4 H 0.064 0.936 5 C -0.102 4.102 6 C -0.113 4.113 7 C -0.116 4.116 8 C -0.125 4.125 9 C 0.147 3.853 10 H 0.065 0.935 11 N -0.713 5.713 12 C 0.537 3.463 13 O -0.561 6.561 14 C -0.129 4.129 15 S -0.150 6.150 16 C -0.548 4.548 17 H 0.083 0.917 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.268 1.268 22 H -0.258 1.258 23 H -0.278 1.278 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.031 0.969 27 H 0.341 0.659 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.078 0.922 36 H 0.411 0.589 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.037 10.759 12.531 24.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.339 5.339 3 C -0.019 4.019 4 H 0.082 0.918 5 C -0.140 4.140 6 C -0.151 4.151 7 C -0.154 4.154 8 C -0.164 4.164 9 C 0.042 3.958 10 H 0.083 0.917 11 N -0.366 5.366 12 C 0.323 3.677 13 O -0.438 6.438 14 C -0.281 4.281 15 S 0.077 5.923 16 C -0.695 4.695 17 H 0.101 0.899 18 C -0.191 4.191 19 N -0.548 5.548 20 Si 0.820 3.180 21 H -0.193 1.193 22 H -0.182 1.182 23 H -0.203 1.203 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.049 0.951 27 H 0.160 0.840 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.248 0.752 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.133 10.474 14.245 23.935 hybrid contribution -1.225 -0.224 -2.852 3.112 sum -17.358 10.250 11.393 23.155 Atomic orbital electron populations 1.22293 0.86336 1.02468 1.01051 1.60410 1.09085 1.13665 1.50724 1.21783 0.92600 0.89849 0.97654 0.91769 1.21496 1.02042 0.96086 0.94415 1.21541 0.95453 0.96218 1.01894 1.21511 0.98218 1.01466 0.94206 1.21885 1.00666 0.95152 0.98735 1.21178 0.97774 0.95400 0.81474 0.91722 1.45856 1.13624 1.61733 1.15394 1.20044 0.83460 0.76572 0.87580 1.90696 1.31725 1.56918 1.64462 1.23376 1.03816 1.04663 0.96215 1.85599 1.12591 1.77368 1.16726 1.23211 1.01121 1.46239 0.98970 0.89922 1.26128 0.94026 0.94896 1.04037 1.70186 1.03728 1.41699 1.39165 0.84952 0.78128 0.78877 0.76015 1.19288 1.18170 1.20314 0.91125 0.90959 0.95062 0.84027 0.92411 0.90362 0.90202 0.90744 0.92760 0.90550 0.94054 0.90300 0.75227 0.87354 0.87173 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.50 127.69 1.34 1.71 16 2 N -0.71 -13.11 6.66 -514.62 -3.43 -16.54 16 3 C 0.09 1.57 2.04 44.92 0.09 1.66 16 4 H 0.06 0.93 7.80 -2.39 -0.02 0.91 16 5 C -0.10 -1.55 5.42 30.59 0.17 -1.39 16 6 C -0.11 -1.47 5.92 30.59 0.18 -1.29 16 7 C -0.12 -2.03 5.92 30.59 0.18 -1.84 16 8 C -0.13 -2.76 5.50 30.61 0.17 -2.59 16 9 C 0.15 3.45 2.02 45.01 0.09 3.54 16 10 H 0.06 1.99 7.58 -2.39 -0.02 1.97 16 11 N -0.71 -17.93 4.14 -442.44 -1.83 -19.76 16 12 C 0.54 19.77 7.81 87.66 0.68 20.46 16 13 O -0.56 -26.18 15.52 -3.01 -0.05 -26.23 16 14 C -0.13 -5.09 6.16 71.24 0.44 -4.66 16 15 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 16 C -0.55 -31.30 9.50 67.96 0.65 -30.66 16 17 H 0.08 4.37 7.80 -2.92 -0.02 4.35 16 18 C 0.01 0.79 5.49 84.86 0.47 1.26 16 19 N -0.91 -56.19 13.22 21.65 0.29 -55.90 16 20 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 22 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 23 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 24 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 25 H 0.07 0.86 7.44 -2.38 -0.02 0.85 16 26 H 0.03 0.36 8.06 -2.38 -0.02 0.35 16 27 H 0.34 7.00 7.65 -89.70 -0.69 6.31 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.00 7.45 -2.39 -0.02 0.99 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.41 7.57 8.60 -92.71 -0.80 6.77 16 37 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 38 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 39 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -74.15 329.39 -0.14 -74.29 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -0.44 Total: 21.86 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 4.46 Total: -13.79 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -4.97 Total: -92.21 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.05 Total: -26.23 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -74.15 -0.14 -74.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722025033.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.260 kcal (2) G-P(sol) polarization free energy of solvation -74.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds