Wall clock time and date at job start Mon Mar 30 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 111.00300 * 2 1 4 4 H 1.09003 * 109.46883 * 325.00197 * 3 2 1 5 5 C 1.52998 * 109.47048 * 84.99712 * 3 2 1 6 6 C 1.53006 * 109.47063 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47148 * 300.00349 * 6 5 3 8 8 C 1.53004 * 109.47194 * 59.99641 * 7 6 5 9 9 C 1.52997 * 109.47278 * 300.00130 * 8 7 6 10 10 H 1.09004 * 109.46812 * 180.02562 * 9 8 7 11 11 N 1.46498 * 109.47036 * 300.00073 * 9 8 7 12 12 C 1.34777 * 119.99828 * 274.72131 * 11 9 8 13 13 O 1.21283 * 120.00222 * 0.28168 * 12 11 9 14 14 C 1.50703 * 120.00290 * 180.27728 * 12 11 9 15 15 S 1.81000 * 109.47389 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99715 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00516 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99710 * 179.97438 * 16 15 14 19 19 N 1.31634 * 120.00163 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00011 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46661 * 60.00586 * 20 18 16 22 22 H 1.48501 * 109.47391 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47355 * 300.00441 * 20 18 16 24 24 H 1.08992 * 109.47178 * 299.99893 * 1 2 3 25 25 H 1.09001 * 109.46929 * 60.00500 * 1 2 3 26 26 H 1.08999 * 109.47059 * 179.97438 * 1 2 3 27 27 H 1.00898 * 110.99906 * 123.95542 * 2 1 3 28 28 H 1.09003 * 109.46883 * 60.00485 * 5 3 2 29 29 H 1.08997 * 109.47266 * 300.00538 * 5 3 2 30 30 H 1.08995 * 109.47185 * 180.02562 * 6 5 3 31 31 H 1.09003 * 109.47067 * 60.00362 * 6 5 3 32 32 H 1.09003 * 109.47147 * 299.99964 * 7 6 5 33 33 H 1.09000 * 109.47204 * 179.97438 * 7 6 5 34 34 H 1.08997 * 109.47037 * 179.97438 * 8 7 6 35 35 H 1.09003 * 109.46809 * 60.00116 * 8 7 6 36 36 H 0.97001 * 120.00384 * 95.00578 * 11 9 8 37 37 H 1.08998 * 109.46954 * 300.00581 * 14 12 11 38 38 H 1.09002 * 109.46946 * 59.99717 * 14 12 11 39 39 H 0.96991 * 119.99795 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0123 -0.5894 5 6 2.0609 1.8926 1.4370 6 6 2.6086 3.3212 1.4369 7 6 4.0118 3.3294 0.8271 8 6 3.9464 2.8081 -0.6099 9 6 3.3987 1.3795 -0.6098 10 1 3.3525 1.0081 -1.6336 11 7 4.2804 0.5185 0.1823 12 6 5.3657 -0.0412 -0.3880 13 8 5.6153 0.1720 -1.5555 14 6 6.2693 -0.9319 0.4252 15 16 7.6276 -1.5239 -0.6144 16 6 8.5007 -2.5105 0.5556 17 1 8.1371 -2.5950 1.5690 18 6 9.6553 -3.1801 0.1744 19 7 10.0982 -3.0776 -1.0609 20 14 10.5814 -4.2255 1.4150 21 1 9.6910 -5.3029 1.9170 22 1 11.7711 -4.8296 0.7632 23 1 11.0184 -3.3749 2.5510 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8306 -0.5261 0.7813 28 1 2.7166 1.2517 2.0264 29 1 1.0612 1.8871 1.8713 30 1 2.6556 3.6924 2.4607 31 1 1.9526 3.9619 0.8476 32 1 4.6679 2.6887 1.4164 33 1 4.4019 4.3472 0.8266 34 1 4.9460 2.8143 -1.0445 35 1 3.2904 3.4488 -1.1993 36 1 4.0808 0.3480 1.1161 37 1 6.6745 -0.3684 1.2656 38 1 5.7000 -1.7829 0.7991 39 1 10.9052 -3.5453 -1.3271 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722025045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:37 Heat of formation + Delta-G solvation = -53.027296 kcal Electronic energy + Delta-G solvation = -19156.059070 eV Core-core repulsion = 16223.926862 eV Total energy + Delta-G solvation = -2932.132207 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.20848 -38.03837 -35.09791 -33.44569 -32.39021 -30.56239 -29.69492 -28.08713 -25.44311 -24.97283 -22.76938 -21.79134 -21.02321 -19.06704 -17.90200 -16.69183 -15.88861 -15.76540 -15.58170 -14.78875 -14.76762 -14.50697 -14.05749 -13.93820 -13.70346 -13.28927 -12.94361 -12.68037 -12.53239 -12.34878 -12.09062 -11.90860 -11.82689 -11.39728 -11.01518 -11.00723 -10.79218 -10.74736 -10.70611 -10.36980 -9.77778 -9.25855 -9.02547 -8.74862 -8.55917 -8.18144 -6.44652 -6.17787 -3.87654 3.11731 3.23179 3.25876 3.30081 3.35495 3.79594 3.93605 4.24396 4.46997 4.50889 4.73060 4.90093 5.04526 5.13216 5.15062 5.17056 5.18787 5.26279 5.34378 5.42970 5.46699 5.62817 5.65931 5.71196 5.76704 5.81318 5.93927 5.98223 6.14394 6.19621 6.21194 6.23235 6.73193 6.85003 7.12156 7.62680 7.84201 8.38615 8.76102 9.27305 10.89597 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028684 B = 0.003920 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.934065 B = 7140.290014 C = 7333.269252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.685 5.685 3 C 0.081 3.919 4 H 0.089 0.911 5 C -0.150 4.150 6 C -0.114 4.114 7 C -0.120 4.120 8 C -0.132 4.132 9 C 0.161 3.839 10 H 0.094 0.906 11 N -0.725 5.725 12 C 0.534 3.466 13 O -0.518 6.518 14 C -0.153 4.153 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.071 0.929 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 H 0.020 0.980 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.343 0.657 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.391 0.609 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.726 11.207 6.689 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.315 5.315 3 C -0.030 4.030 4 H 0.107 0.893 5 C -0.190 4.190 6 C -0.152 4.152 7 C -0.157 4.157 8 C -0.171 4.171 9 C 0.055 3.945 10 H 0.112 0.888 11 N -0.380 5.380 12 C 0.320 3.680 13 O -0.392 6.392 14 C -0.304 4.304 15 S 0.168 5.832 16 C -0.684 4.684 17 H 0.089 0.911 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.744 3.256 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.200 1.200 24 H 0.038 0.962 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.161 0.839 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.225 0.775 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.136 11.415 3.892 21.780 hybrid contribution -0.017 -0.748 3.613 3.689 sum -18.153 10.667 7.505 22.353 Atomic orbital electron populations 1.22220 0.87850 1.01928 1.00154 1.60421 1.07503 1.13199 1.50333 1.21905 0.95983 0.89669 0.95398 0.89332 1.22275 1.01057 0.97793 0.97838 1.21476 0.96987 0.95923 1.00833 1.21514 0.96532 1.01147 0.96521 1.21954 1.02562 0.95789 0.96843 1.20841 0.87078 0.89689 0.96843 0.88846 1.45971 1.26931 1.51008 1.14067 1.20217 0.80552 0.79446 0.87761 1.90690 1.71621 1.60339 1.16579 1.23527 1.02122 1.01018 1.03711 1.85390 1.22103 1.60694 1.15048 1.22838 1.12962 1.34121 0.98502 0.91072 1.24979 0.96379 0.96314 0.95850 1.70009 1.22577 1.41121 1.16620 0.86243 0.78880 0.79970 0.80508 1.19961 1.20827 1.19987 0.96164 0.91730 0.91425 0.83886 0.91720 0.91992 0.92056 0.91970 0.91631 0.91999 0.90688 0.91406 0.77453 0.89550 0.89409 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.50 60.06 0.63 0.85 16 2 N -0.69 -6.59 6.44 -114.01 -0.73 -7.33 16 3 C 0.08 0.74 2.20 -67.71 -0.15 0.59 16 4 H 0.09 0.77 7.80 -51.93 -0.40 0.36 16 5 C -0.15 -1.13 5.00 -26.73 -0.13 -1.27 16 6 C -0.11 -0.86 5.92 -26.73 -0.16 -1.02 16 7 C -0.12 -1.13 5.77 -26.73 -0.15 -1.28 16 8 C -0.13 -1.48 5.61 -26.73 -0.15 -1.63 16 9 C 0.16 1.95 2.45 -67.93 -0.17 1.78 16 10 H 0.09 1.41 7.57 -51.93 -0.39 1.02 16 11 N -0.73 -9.72 4.04 -53.81 -0.22 -9.93 16 12 C 0.53 10.05 7.82 -10.98 -0.09 9.96 16 13 O -0.52 -11.89 15.52 5.55 0.09 -11.81 16 14 C -0.15 -3.13 6.16 36.01 0.22 -2.90 16 15 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 16 C -0.54 -15.42 9.50 30.94 0.29 -15.12 16 17 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 18 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 19 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 20 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H 0.02 0.13 7.44 -51.93 -0.39 -0.25 16 25 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.34 3.13 8.52 -39.29 -0.33 2.79 16 28 H 0.06 0.49 6.49 -51.93 -0.34 0.15 16 29 H 0.06 0.43 7.45 -51.93 -0.39 0.04 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.69 7.60 -51.93 -0.39 0.29 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.39 4.26 6.87 -40.82 -0.28 3.98 16 37 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 38 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 39 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 326.13 15.07 4.91 4.91 Total: -1.00 -33.59 326.13 -8.66 -42.25 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.26 Total: 2.89 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 0.05 Total: -8.01 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: -0.22 Total: -42.94 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.59 -8.66 -42.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722025045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.774 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds