Wall clock time and date at job start Mon Mar 30 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46905 * 110.99940 * 2 1 4 4 H 1.09002 * 109.47082 * 325.00102 * 3 2 1 5 5 C 1.53005 * 109.46858 * 84.99687 * 3 2 1 6 6 C 1.52999 * 109.47159 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47317 * 300.00546 * 6 5 3 8 8 C 1.53000 * 109.47060 * 59.99960 * 7 6 5 9 9 H 1.08992 * 109.47399 * 59.99823 * 8 7 6 10 10 N 1.46499 * 109.46840 * 180.02562 * 8 7 6 11 11 C 1.34781 * 119.99874 * 274.99457 * 10 8 7 12 12 O 1.21278 * 120.00033 * 0.02562 * 11 10 8 13 13 C 1.50706 * 119.99804 * 179.97438 * 11 10 8 14 14 S 1.80999 * 109.46747 * 180.02562 * 13 11 10 15 15 C 1.76199 * 99.99879 * 180.02562 * 14 13 11 16 16 H 1.07997 * 119.99970 * 0.02562 * 15 14 13 17 17 C 1.38800 * 120.00000 * 180.02562 * 15 14 13 18 18 N 1.31636 * 120.00005 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99928 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47092 * 60.00259 * 19 17 15 21 21 H 1.48502 * 109.46735 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46995 * 300.00174 * 19 17 15 23 23 C 1.52997 * 109.47252 * 205.00009 * 3 2 1 24 24 H 1.09003 * 109.47270 * 60.00180 * 1 2 3 25 25 H 1.09005 * 109.46893 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47487 * 300.00141 * 1 2 3 27 27 H 1.00894 * 111.00085 * 123.95204 * 2 1 3 28 28 H 1.09000 * 109.47360 * 300.00350 * 5 3 2 29 29 H 1.09002 * 109.46935 * 60.00325 * 5 3 2 30 30 H 1.08996 * 109.46929 * 179.97438 * 6 5 3 31 31 H 1.09002 * 109.46716 * 60.00455 * 6 5 3 32 32 H 1.09002 * 109.47153 * 299.99641 * 7 6 5 33 33 H 1.09001 * 109.46832 * 179.97438 * 7 6 5 34 34 H 0.97002 * 120.00410 * 95.00239 * 10 8 7 35 35 H 1.08993 * 109.47165 * 299.99869 * 13 11 10 36 36 H 1.09002 * 109.46852 * 60.00491 * 13 11 10 37 37 H 0.96998 * 119.99706 * 180.02562 * 18 17 15 38 38 H 1.08993 * 109.47194 * 59.99761 * 23 3 2 39 39 H 1.09002 * 109.46695 * 299.99775 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3397 2.0124 -0.5894 5 6 2.0607 1.8926 1.4371 6 6 2.6096 3.3208 1.4372 7 6 4.0129 3.3279 0.8278 8 6 3.9475 2.8068 -0.6093 9 1 3.2922 3.4479 -1.1987 10 7 5.2914 2.8131 -1.1925 11 6 5.7749 3.9365 -1.7590 12 8 5.0977 4.9422 -1.7854 13 6 7.1576 3.9430 -2.3585 14 16 7.5143 5.5839 -3.0341 15 6 9.1420 5.3130 -3.6521 16 1 9.6057 4.3436 -3.5453 17 6 9.8281 6.3456 -4.2763 18 7 9.2630 7.5274 -4.4061 19 14 11.5540 6.0586 -4.9310 20 1 11.5234 4.9800 -5.9512 21 1 12.0633 7.3093 -5.5487 22 1 12.4468 5.6583 -3.8139 23 6 3.3987 1.3791 -0.6096 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8306 -0.5261 0.7813 28 1 1.0610 1.8872 1.8714 29 1 2.7164 1.2518 2.0265 30 1 2.6557 3.6922 2.4609 31 1 1.9542 3.9619 0.8477 32 1 4.6683 2.6868 1.4173 33 1 4.4037 4.3455 0.8275 34 1 5.8332 2.0088 -1.1712 35 1 7.8890 3.7011 -1.5876 36 1 7.2113 3.2019 -3.1560 37 1 9.7423 8.2489 -4.8426 38 1 3.3521 1.0078 -1.6333 39 1 4.0543 0.7383 -0.0201 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722030078.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:55 Heat of formation + Delta-G solvation = -57.627388 kcal Electronic energy + Delta-G solvation = -18580.194585 eV Core-core repulsion = 15647.862902 eV Total energy + Delta-G solvation = -2932.331682 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.91106 -38.38105 -35.43994 -33.45789 -32.40908 -30.54343 -29.72214 -27.98826 -25.46062 -25.09573 -22.58222 -22.03293 -20.33804 -20.06276 -17.80638 -16.62663 -16.29620 -15.67213 -15.04268 -14.94904 -14.78819 -14.65647 -14.30802 -13.96444 -13.81836 -13.33913 -13.07084 -12.73030 -12.62364 -12.44405 -12.07293 -11.86950 -11.45711 -11.34813 -11.02927 -11.02492 -10.99558 -10.76066 -10.69775 -10.60351 -9.80061 -9.33045 -9.04440 -8.82930 -8.73301 -8.21564 -6.47704 -6.19729 -3.90100 3.05104 3.14159 3.24881 3.28708 3.32279 3.67750 3.93426 4.22497 4.43645 4.63486 4.77203 4.90095 4.92688 5.08471 5.08972 5.15243 5.22139 5.25675 5.28818 5.33427 5.43113 5.56106 5.64242 5.71711 5.75496 5.80482 5.91636 5.93813 6.04382 6.17343 6.20977 6.24520 6.64686 6.74859 7.01259 7.61121 7.78338 8.36937 8.67356 9.25417 10.87663 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.048660 B = 0.003099 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.278542 B = 9033.397798 C = 9259.158985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.690 5.690 3 C 0.090 3.910 4 H 0.080 0.920 5 C -0.148 4.148 6 C -0.112 4.112 7 C -0.131 4.131 8 C 0.149 3.851 9 H 0.086 0.914 10 N -0.734 5.734 11 C 0.533 3.467 12 O -0.518 6.518 13 C -0.154 4.154 14 S -0.060 6.060 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.112 4.112 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.022 0.978 27 H 0.341 0.659 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.397 0.603 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.269 0.731 38 H 0.076 0.924 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.211 -15.358 11.697 23.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.319 5.319 3 C -0.020 4.020 4 H 0.099 0.901 5 C -0.187 4.187 6 C -0.151 4.151 7 C -0.170 4.170 8 C 0.043 3.957 9 H 0.105 0.895 10 N -0.388 5.388 11 C 0.319 3.681 12 O -0.392 6.392 13 C -0.304 4.304 14 S 0.166 5.834 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.151 4.151 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.158 0.842 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.231 0.769 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.294 -13.564 10.875 23.155 hybrid contribution 1.978 -1.476 0.609 2.542 sum -13.316 -15.040 11.484 23.139 Atomic orbital electron populations 1.22220 0.87786 1.01778 1.00505 1.60478 1.07776 1.13780 1.49888 1.21551 0.96203 0.89125 0.95164 0.90128 1.22286 1.00930 0.97819 0.97684 1.21410 0.96613 0.96004 1.01079 1.21958 0.96841 1.02474 0.95732 1.20821 0.84430 0.96560 0.93906 0.89545 1.46058 1.17238 1.14195 1.61272 1.20305 0.88189 0.82687 0.76946 1.90691 1.59458 1.32488 1.56586 1.23539 0.95432 1.08116 1.03358 1.85380 1.19510 1.05055 1.73442 1.22833 1.01025 1.00412 1.44122 0.90993 1.24994 0.98794 0.94442 0.95366 1.70012 1.37674 1.01817 1.40843 0.86225 0.82474 0.77738 0.79067 1.19941 1.20822 1.19949 1.21733 0.95517 0.95640 1.02223 0.91611 0.91525 0.95948 0.84164 0.92196 0.91710 0.91714 0.91597 0.91920 0.90923 0.76916 0.89285 0.89248 0.92147 0.90541 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.50 60.06 0.63 0.81 16 2 N -0.69 -5.27 6.60 -114.00 -0.75 -6.02 16 3 C 0.09 0.75 2.47 -67.71 -0.17 0.58 16 4 H 0.08 0.74 7.80 -51.93 -0.40 0.33 16 5 C -0.15 -1.12 5.17 -26.73 -0.14 -1.25 16 6 C -0.11 -1.02 5.92 -26.73 -0.16 -1.18 16 7 C -0.13 -1.47 5.49 -26.73 -0.15 -1.62 16 8 C 0.15 1.77 2.45 -67.95 -0.17 1.60 16 9 H 0.09 1.23 7.58 -51.93 -0.39 0.83 16 10 N -0.73 -9.93 5.08 -53.83 -0.27 -10.21 16 11 C 0.53 10.01 7.81 -10.98 -0.09 9.92 16 12 O -0.52 -11.78 15.53 5.56 0.09 -11.70 16 13 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 14 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 15 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 16 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.36 13.22 55.49 0.73 -25.62 16 19 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 C -0.11 -1.04 4.99 -26.76 -0.13 -1.18 16 24 H 0.07 0.46 8.06 -51.93 -0.42 0.04 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.02 0.13 7.43 -51.93 -0.39 -0.25 16 27 H 0.34 2.19 8.56 -39.29 -0.34 1.86 16 28 H 0.06 0.42 7.45 -51.93 -0.39 0.03 16 29 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.40 4.25 8.60 -40.82 -0.35 3.90 16 35 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 36 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 37 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 330.84 15.07 4.99 4.99 Total: -1.00 -33.52 330.84 -8.85 -42.37 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.45 Total: 1.85 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 0.05 Total: -8.30 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: -0.29 Total: -41.85 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.52 -8.85 -42.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722030078.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.253 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds