Wall clock time and date at job start Mon Mar 30 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46905 * 110.99940 * 2 1 4 4 H 1.09002 * 109.47082 * 325.00102 * 3 2 1 5 5 C 1.53005 * 109.46858 * 84.99687 * 3 2 1 6 6 C 1.52999 * 109.47159 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47317 * 300.00546 * 6 5 3 8 8 C 1.53000 * 109.47060 * 59.99960 * 7 6 5 9 9 H 1.08992 * 109.47399 * 59.99823 * 8 7 6 10 10 N 1.46499 * 109.46840 * 180.02562 * 8 7 6 11 11 C 1.34781 * 119.99874 * 274.99457 * 10 8 7 12 12 O 1.21278 * 120.00033 * 0.02562 * 11 10 8 13 13 C 1.50706 * 119.99804 * 179.97438 * 11 10 8 14 14 S 1.80999 * 109.46747 * 180.02562 * 13 11 10 15 15 C 1.76199 * 99.99879 * 180.02562 * 14 13 11 16 16 H 1.07997 * 119.99970 * 0.02562 * 15 14 13 17 17 C 1.38800 * 120.00000 * 180.02562 * 15 14 13 18 18 N 1.31636 * 120.00005 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99928 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47092 * 60.00259 * 19 17 15 21 21 H 1.48502 * 109.46735 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46995 * 300.00174 * 19 17 15 23 23 C 1.52997 * 109.47252 * 205.00009 * 3 2 1 24 24 H 1.09003 * 109.47270 * 60.00180 * 1 2 3 25 25 H 1.09005 * 109.46893 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47487 * 300.00141 * 1 2 3 27 27 H 1.00894 * 111.00085 * 123.95204 * 2 1 3 28 28 H 1.09000 * 109.47360 * 300.00350 * 5 3 2 29 29 H 1.09002 * 109.46935 * 60.00325 * 5 3 2 30 30 H 1.08996 * 109.46929 * 179.97438 * 6 5 3 31 31 H 1.09002 * 109.46716 * 60.00455 * 6 5 3 32 32 H 1.09002 * 109.47153 * 299.99641 * 7 6 5 33 33 H 1.09001 * 109.46832 * 179.97438 * 7 6 5 34 34 H 0.97002 * 120.00410 * 95.00239 * 10 8 7 35 35 H 1.08993 * 109.47165 * 299.99869 * 13 11 10 36 36 H 1.09002 * 109.46852 * 60.00491 * 13 11 10 37 37 H 0.96998 * 119.99706 * 180.02562 * 18 17 15 38 38 H 1.08993 * 109.47194 * 59.99761 * 23 3 2 39 39 H 1.09002 * 109.46695 * 299.99775 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3397 2.0124 -0.5894 5 6 2.0607 1.8926 1.4371 6 6 2.6096 3.3208 1.4372 7 6 4.0129 3.3279 0.8278 8 6 3.9475 2.8068 -0.6093 9 1 3.2922 3.4479 -1.1987 10 7 5.2914 2.8131 -1.1925 11 6 5.7749 3.9365 -1.7590 12 8 5.0977 4.9422 -1.7854 13 6 7.1576 3.9430 -2.3585 14 16 7.5143 5.5839 -3.0341 15 6 9.1420 5.3130 -3.6521 16 1 9.6057 4.3436 -3.5453 17 6 9.8281 6.3456 -4.2763 18 7 9.2630 7.5274 -4.4061 19 14 11.5540 6.0586 -4.9310 20 1 11.5234 4.9800 -5.9512 21 1 12.0633 7.3093 -5.5487 22 1 12.4468 5.6583 -3.8139 23 6 3.3987 1.3791 -0.6096 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8306 -0.5261 0.7813 28 1 1.0610 1.8872 1.8714 29 1 2.7164 1.2518 2.0265 30 1 2.6557 3.6922 2.4609 31 1 1.9542 3.9619 0.8477 32 1 4.6683 2.6868 1.4173 33 1 4.4037 4.3455 0.8275 34 1 5.8332 2.0088 -1.1712 35 1 7.8890 3.7011 -1.5876 36 1 7.2113 3.2019 -3.1560 37 1 9.7423 8.2489 -4.8426 38 1 3.3521 1.0078 -1.6333 39 1 4.0543 0.7383 -0.0201 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722030078.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:55 Heat of formation + Delta-G solvation = -82.477231 kcal Electronic energy + Delta-G solvation = -18581.272155 eV Core-core repulsion = 15647.862902 eV Total energy + Delta-G solvation = -2933.409252 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.06324 -39.48449 -36.37194 -34.59293 -34.50289 -31.70883 -30.65195 -29.18126 -27.64134 -25.70261 -23.45929 -22.90759 -21.49621 -21.08340 -19.79609 -17.82739 -17.60933 -16.87694 -16.59158 -16.39253 -15.95125 -15.71176 -15.37166 -15.13079 -14.70478 -14.59176 -14.46605 -14.03803 -13.62355 -13.40141 -13.16964 -13.15200 -12.86253 -12.63846 -12.58502 -12.31574 -12.11314 -11.81307 -11.72022 -11.51713 -11.48657 -11.12676 -10.86018 -10.27827 -10.06820 -9.32041 -8.66728 -8.34333 -6.12645 1.27131 1.44268 1.47048 1.57009 1.62888 2.25387 2.29513 2.99585 3.23286 3.32819 3.70980 3.83814 3.93716 4.09673 4.13442 4.20518 4.31491 4.42357 4.43150 4.51175 4.51815 4.56643 4.63999 4.72155 4.91038 5.01568 5.07321 5.10001 5.11107 5.24542 5.34178 5.35929 5.41685 5.56739 6.05957 6.19846 6.51294 6.55142 7.06666 7.27681 8.74724 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.048660 B = 0.003099 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.278542 B = 9033.397798 C = 9259.158985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.696 5.696 3 C 0.093 3.907 4 H 0.067 0.933 5 C -0.138 4.138 6 C -0.110 4.110 7 C -0.127 4.127 8 C 0.148 3.852 9 H 0.059 0.941 10 N -0.709 5.709 11 C 0.534 3.466 12 O -0.566 6.566 13 C -0.130 4.130 14 S -0.152 6.152 15 C -0.547 4.547 16 H 0.083 0.917 17 C 0.012 3.988 18 N -0.912 5.912 19 Si 0.999 3.001 20 H -0.262 1.262 21 H -0.279 1.279 22 H -0.261 1.261 23 C -0.101 4.101 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.029 0.971 27 H 0.350 0.650 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.416 0.584 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.271 0.729 38 H 0.069 0.931 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.634 -18.247 12.696 26.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.326 5.326 3 C -0.017 4.017 4 H 0.085 0.915 5 C -0.177 4.177 6 C -0.148 4.148 7 C -0.165 4.165 8 C 0.043 3.957 9 H 0.077 0.923 10 N -0.362 5.362 11 C 0.320 3.680 12 O -0.444 6.444 13 C -0.281 4.281 14 S 0.075 5.925 15 C -0.695 4.695 16 H 0.101 0.899 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.186 1.186 21 H -0.204 1.204 22 H -0.186 1.186 23 C -0.140 4.140 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.047 0.953 27 H 0.169 0.831 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.253 0.747 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.729 -16.522 11.902 25.131 hybrid contribution 1.694 -0.656 0.358 1.852 sum -13.035 -17.178 12.259 24.805 Atomic orbital electron populations 1.22240 0.87109 1.02514 1.00442 1.60427 1.08476 1.13125 1.50579 1.21443 0.95227 0.89635 0.95437 0.91453 1.22206 1.01726 0.96498 0.97273 1.21386 0.94983 0.97289 1.01177 1.21895 0.98534 1.00638 0.95462 1.20943 0.82808 0.98189 0.93773 0.92301 1.45832 1.17930 1.13184 1.59269 1.20078 0.87428 0.83362 0.77157 1.90683 1.60404 1.34540 1.58753 1.23382 0.97012 1.03468 1.04218 1.85575 1.20523 1.11774 1.74665 1.23178 1.01035 1.01063 1.44203 0.89889 1.26151 1.03736 0.93942 0.95402 1.70184 1.39793 1.02986 1.41880 0.84993 0.76256 0.77960 0.78715 1.18642 1.20393 1.18603 1.21629 0.96455 0.93456 1.02413 0.92453 0.90401 0.95259 0.83097 0.91149 0.90310 0.90693 0.92714 0.90247 0.94363 0.74745 0.87216 0.87260 0.91989 0.91195 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.50 127.69 1.34 1.63 16 2 N -0.70 -8.87 6.60 -514.60 -3.40 -12.27 16 3 C 0.09 1.37 2.47 44.92 0.11 1.48 16 4 H 0.07 1.18 7.80 -2.39 -0.02 1.16 16 5 C -0.14 -1.72 5.17 30.60 0.16 -1.56 16 6 C -0.11 -1.86 5.92 30.59 0.18 -1.67 16 7 C -0.13 -2.74 5.49 30.59 0.17 -2.57 16 8 C 0.15 3.43 2.45 44.98 0.11 3.54 16 9 H 0.06 1.73 7.58 -2.39 -0.02 1.71 16 10 N -0.71 -18.32 5.08 -442.60 -2.25 -20.57 16 11 C 0.53 20.10 7.81 87.66 0.68 20.78 16 12 O -0.57 -26.74 15.53 -3.02 -0.05 -26.79 16 13 C -0.13 -5.21 6.16 71.24 0.44 -4.77 16 14 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 15 C -0.55 -31.53 9.50 67.95 0.65 -30.88 16 16 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 17 C 0.01 0.71 5.49 84.86 0.47 1.18 16 18 N -0.91 -56.58 13.22 21.65 0.29 -56.29 16 19 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 20 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 21 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 23 C -0.10 -1.66 4.99 30.58 0.15 -1.51 16 24 H 0.06 0.72 8.06 -2.39 -0.02 0.71 16 25 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 26 H 0.03 0.28 7.43 -2.39 -0.02 0.27 16 27 H 0.35 3.36 8.56 -89.70 -0.77 2.60 16 28 H 0.07 0.78 7.45 -2.39 -0.02 0.77 16 29 H 0.08 0.82 8.13 -2.39 -0.02 0.80 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.42 7.78 8.60 -92.71 -0.80 6.98 16 35 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 36 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 37 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -75.29 330.84 -0.61 -75.90 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -0.52 Total: 18.26 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 4.46 Total: -14.36 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -5.36 Total: -89.13 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.05 Total: -26.79 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -75.29 -0.61 -75.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722030078.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.576 kcal (2) G-P(sol) polarization free energy of solvation -75.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds