Wall clock time and date at job start Mon Mar 30 2020 05:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46903 * 110.99505 * 2 1 4 4 H 1.08995 * 109.46082 * 324.96812 * 3 2 1 5 5 C 1.53031 * 109.45144 * 84.93851 * 3 2 1 6 6 C 1.53196 * 109.31477 * 181.37573 * 5 3 2 7 7 N 1.46927 * 108.77413 * 305.36304 * 6 5 3 8 8 C 1.34776 * 120.63010 * 233.60595 * 7 6 5 9 9 O 1.21283 * 119.99717 * 180.02562 * 8 7 6 10 10 C 1.50695 * 120.00047 * 0.02562 * 8 7 6 11 11 S 1.81005 * 109.46977 * 179.97438 * 10 8 7 12 12 C 1.76203 * 99.99917 * 179.97438 * 11 10 8 13 13 H 1.07998 * 119.99837 * 359.97438 * 12 11 10 14 14 C 1.38792 * 119.99832 * 179.97438 * 12 11 10 15 15 N 1.31633 * 120.00197 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99934 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47391 * 60.00033 * 16 14 12 18 18 H 1.48501 * 109.47560 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47268 * 300.00057 * 16 14 12 20 20 C 1.46923 * 118.73554 * 53.60901 * 7 6 5 21 21 C 1.53046 * 109.45495 * 204.99731 * 3 2 1 22 22 H 1.08990 * 109.49711 * 298.57789 * 21 3 2 23 23 C 1.52997 * 109.49842 * 58.67936 * 21 3 2 24 24 H 1.08999 * 109.46832 * 60.00338 * 1 2 3 25 25 H 1.09001 * 109.47011 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47217 * 300.00201 * 1 2 3 27 27 H 1.00892 * 110.99995 * 236.04304 * 2 1 3 28 28 H 1.09004 * 109.49984 * 301.33080 * 5 3 2 29 29 H 1.08998 * 109.50266 * 61.38976 * 5 3 2 30 30 H 1.08993 * 109.58448 * 65.15176 * 6 5 3 31 31 H 1.08999 * 109.58828 * 185.43347 * 6 5 3 32 32 H 1.09006 * 109.47183 * 299.99730 * 10 8 7 33 33 H 1.08999 * 109.47237 * 59.99707 * 10 8 7 34 34 H 0.97002 * 119.99606 * 180.02562 * 15 14 12 35 35 H 1.09009 * 109.58590 * 186.60449 * 20 7 6 36 36 H 1.08995 * 109.59117 * 66.17682 * 20 7 6 37 37 H 1.09003 * 109.47396 * 59.99211 * 23 21 3 38 38 H 1.09001 * 109.47538 * 180.02562 * 23 21 3 39 39 H 1.09004 * 109.47024 * 299.99993 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3399 2.0120 -0.5899 5 6 2.0591 1.8929 1.4373 6 6 2.5759 3.3351 1.4308 7 7 3.8597 3.3741 0.7173 8 6 4.9511 3.9125 1.2965 9 8 6.0050 3.9391 0.6968 10 6 4.8619 4.4813 2.6891 11 16 6.4804 5.1236 3.1832 12 6 6.0964 5.7099 4.7998 13 1 5.0934 5.6078 5.1871 14 6 7.0828 6.3030 5.5754 15 7 8.3051 6.4278 5.1032 16 14 6.6759 6.9239 7.2895 17 1 6.1943 5.7939 8.1241 18 1 7.8929 7.5111 7.9053 19 1 5.6166 7.9610 7.2019 20 6 3.9310 2.8152 -0.6396 21 6 3.3991 1.3788 -0.6098 22 1 4.0612 0.7581 -0.0062 23 6 3.3394 0.8267 -2.0354 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8306 -0.5261 -0.7813 28 1 1.0629 1.8654 1.8789 29 1 2.7334 1.2670 2.0219 30 1 1.8566 3.9786 0.9243 31 1 2.7147 3.6782 2.4560 32 1 4.1297 5.2887 2.7056 33 1 4.5550 3.6983 3.3824 34 1 8.9946 6.8420 5.6454 35 1 4.9664 2.8143 -0.9805 36 1 3.3222 3.4163 -1.3149 37 1 2.6782 1.4488 -2.6387 38 1 4.3394 0.8317 -2.4692 39 1 2.9581 -0.1942 -2.0140 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722030553.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:58 Heat of formation + Delta-G solvation = -63.254337 kcal Electronic energy + Delta-G solvation = -19082.011064 eV Core-core repulsion = 16149.435379 eV Total energy + Delta-G solvation = -2932.575685 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.33022 -39.27042 -36.31626 -34.58544 -34.18277 -32.01800 -30.99696 -27.80545 -27.45318 -26.72711 -24.44108 -23.01338 -21.41746 -20.42389 -19.49146 -18.21709 -17.19813 -16.88226 -16.85830 -16.65284 -15.96738 -15.76471 -15.13660 -14.99827 -14.81850 -14.48418 -14.23800 -13.80448 -13.57184 -13.35651 -13.20776 -13.16586 -12.97368 -12.95692 -12.86080 -12.59153 -12.17585 -11.94517 -11.73818 -11.72884 -11.28639 -11.12722 -10.87405 -10.27391 -9.71535 -9.36415 -8.67942 -8.34315 -6.13241 1.25127 1.44488 1.45649 1.54802 1.56097 2.08983 2.27737 2.99696 3.19557 3.26069 3.56537 3.75858 3.79447 3.90603 4.17054 4.23413 4.26320 4.37410 4.43409 4.48011 4.54807 4.62387 4.66797 4.72068 4.77307 4.80975 4.91140 5.00129 5.10554 5.17360 5.25500 5.36542 5.41356 5.55311 6.09840 6.19555 6.26741 6.49091 7.06539 7.12140 8.74803 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033203 B = 0.003884 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.084343 B = 7207.252952 C = 7856.068153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.704 5.704 3 C 0.098 3.902 4 H 0.058 0.942 5 C -0.118 4.118 6 C 0.101 3.899 7 N -0.607 5.607 8 C 0.532 3.468 9 O -0.567 6.567 10 C -0.123 4.123 11 S -0.152 6.152 12 C -0.547 4.547 13 H 0.083 0.917 14 C 0.014 3.986 15 N -0.912 5.912 16 Si 0.999 3.001 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.261 1.261 20 C 0.117 3.883 21 C -0.102 4.102 22 H 0.061 0.939 23 C -0.144 4.144 24 H 0.029 0.971 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.348 0.652 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.271 0.729 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.727 -11.428 -11.258 25.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.337 5.337 3 C -0.011 4.011 4 H 0.076 0.924 5 C -0.157 4.157 6 C -0.021 4.021 7 N -0.341 5.341 8 C 0.320 3.680 9 O -0.446 6.446 10 C -0.274 4.274 11 S 0.075 5.925 12 C -0.695 4.695 13 H 0.101 0.899 14 C -0.191 4.191 15 N -0.548 5.548 16 Si 0.821 3.179 17 H -0.186 1.186 18 H -0.204 1.204 19 H -0.185 1.185 20 C -0.006 4.006 21 C -0.122 4.122 22 H 0.079 0.921 23 C -0.202 4.202 24 H 0.047 0.953 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.169 0.831 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.983 -11.424 -11.455 24.189 hybrid contribution -0.964 0.641 0.755 1.382 sum -18.947 -10.783 -10.700 24.285 Atomic orbital electron populations 1.22270 0.86769 1.02452 1.00722 1.60425 1.08756 1.13566 1.50982 1.21465 0.94194 0.89869 0.95606 0.92379 1.21882 1.02269 0.94321 0.97203 1.22024 0.83611 0.98191 0.98275 1.48116 1.09802 1.59153 1.16998 1.20147 0.83361 0.77256 0.87236 1.90667 1.30282 1.58246 1.65396 1.23366 1.03552 1.04054 0.96443 1.85583 1.10842 1.76794 1.19306 1.23167 0.99700 1.45695 1.00930 0.89874 1.26141 0.94067 0.95170 1.03723 1.70185 1.02852 1.42441 1.39339 0.84995 0.77996 0.78810 0.76140 1.18623 1.20384 1.18543 1.21728 1.02453 0.93897 0.82488 1.21581 0.96792 0.95375 0.98412 0.92056 1.21798 1.02940 1.01523 0.93975 0.95253 0.90737 0.91717 0.83091 0.88953 0.92612 0.88961 0.89175 0.87351 0.87670 0.91972 0.91110 0.89609 0.91264 0.92086 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.50 127.69 1.34 1.64 16 2 N -0.70 -10.22 6.66 -514.47 -3.43 -13.65 16 3 C 0.10 1.56 1.95 44.94 0.09 1.64 16 4 H 0.06 0.81 7.80 -2.39 -0.02 0.79 16 5 C -0.12 -2.11 5.59 30.67 0.17 -1.94 16 6 C 0.10 2.06 6.34 86.36 0.55 2.61 16 7 N -0.61 -17.08 2.97 -818.91 -2.43 -19.52 16 8 C 0.53 20.93 7.72 87.66 0.68 21.61 16 9 O -0.57 -27.46 15.27 -3.04 -0.05 -27.50 16 10 C -0.12 -5.09 4.50 71.23 0.32 -4.77 16 11 S -0.15 -8.66 20.57 -56.49 -1.16 -9.83 16 12 C -0.55 -31.62 9.50 67.95 0.65 -30.97 16 13 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 14 C 0.01 0.79 5.49 84.86 0.47 1.25 16 15 N -0.91 -56.59 13.22 21.65 0.29 -56.30 16 16 Si 1.00 43.79 29.55 68.60 2.03 45.81 16 17 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 18 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 20 C 0.12 2.78 5.72 86.36 0.49 3.27 16 21 C -0.10 -1.89 2.55 -10.71 -0.03 -1.92 16 22 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 23 C -0.14 -1.89 8.94 71.98 0.64 -1.25 16 24 H 0.03 0.28 8.05 -2.39 -0.02 0.26 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.72 7.41 -2.39 -0.02 0.71 16 27 H 0.35 4.34 6.17 -89.70 -0.55 3.78 16 28 H 0.09 1.33 7.42 -2.38 -0.02 1.32 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.09 1.89 5.95 -2.39 -0.01 1.88 16 32 H 0.11 4.03 7.94 -2.39 -0.02 4.01 16 33 H 0.11 3.99 7.70 -2.40 -0.02 3.97 16 34 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 35 H 0.07 2.07 7.01 -2.38 -0.02 2.05 16 36 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.07 0.76 6.17 -2.38 -0.01 0.75 16 Total: -1.00 -75.57 323.09 1.09 -74.48 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.48 Total: 15.33 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 5.37 Total: -8.83 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -5.58 Total: -89.47 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.05 Total: -27.50 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.83 kcal Total: -75.57 1.09 -74.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722030553.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.228 kcal (2) G-P(sol) polarization free energy of solvation -75.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds