Wall clock time and date at job start Mon Mar 30 2020 05:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46897 * 111.00375 * 2 1 4 4 H 1.08996 * 109.44666 * 324.96706 * 3 2 1 5 5 C 1.53040 * 109.45908 * 84.92868 * 3 2 1 6 6 C 1.52761 * 109.38299 * 181.25692 * 5 3 2 7 7 N 1.46918 * 109.01190 * 305.59408 * 6 5 3 8 8 C 1.34784 * 120.63039 * 233.58189 * 7 6 5 9 9 O 1.21274 * 119.99897 * 179.44672 * 8 7 6 10 10 C 1.50695 * 119.99635 * 359.71713 * 8 7 6 11 11 S 1.81006 * 109.46975 * 180.02562 * 10 8 7 12 12 C 1.76200 * 100.00155 * 179.97438 * 11 10 8 13 13 H 1.08005 * 119.99670 * 0.02562 * 12 11 10 14 14 C 1.38796 * 120.00050 * 180.02562 * 12 11 10 15 15 N 1.31631 * 119.99873 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99940 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.46850 * 90.00197 * 16 14 12 18 18 H 1.48497 * 109.47572 * 209.99914 * 16 14 12 19 19 H 1.48498 * 109.47329 * 330.00770 * 16 14 12 20 20 C 1.46931 * 118.74146 * 53.30689 * 7 6 5 21 21 C 1.53036 * 109.46184 * 204.99853 * 3 2 1 22 22 H 1.09001 * 109.52574 * 58.64772 * 21 3 2 23 23 C 1.53004 * 109.49665 * 298.56760 * 21 3 2 24 24 H 1.09002 * 109.46917 * 59.99754 * 1 2 3 25 25 H 1.08997 * 109.47895 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47438 * 300.00223 * 1 2 3 27 27 H 1.00902 * 111.00115 * 236.04470 * 2 1 3 28 28 H 1.08997 * 109.50389 * 301.33741 * 5 3 2 29 29 H 1.09005 * 109.49616 * 61.40313 * 5 3 2 30 30 H 1.08998 * 109.51072 * 185.70178 * 6 5 3 31 31 H 1.09001 * 109.42799 * 65.43250 * 6 5 3 32 32 H 1.09005 * 109.47403 * 300.00056 * 10 8 7 33 33 H 1.09002 * 109.47422 * 60.00295 * 10 8 7 34 34 H 0.97005 * 119.99693 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.58531 * 66.42734 * 20 7 6 36 36 H 1.09001 * 109.58745 * 186.71763 * 20 7 6 37 37 H 1.08999 * 109.46850 * 300.15914 * 23 21 3 38 38 H 1.09000 * 109.47449 * 60.16290 * 23 21 3 39 39 H 1.09003 * 109.47165 * 180.16250 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3399 2.0118 -0.5900 5 6 2.0591 1.8930 1.4373 6 6 2.5773 3.3301 1.4326 7 7 3.8596 3.3741 0.7170 8 6 4.9512 3.9122 1.2962 9 8 6.0064 3.9335 0.6988 10 6 4.8619 4.4818 2.6885 11 16 6.4802 5.1248 3.1823 12 6 6.0961 5.7119 4.7986 13 1 5.0932 5.6090 5.1863 14 6 7.0821 6.3066 5.5735 15 7 6.7952 6.7447 6.7811 16 14 8.8166 6.4839 4.9032 17 1 8.9420 7.7812 4.1914 18 1 9.7881 6.4392 6.0254 19 1 9.0987 5.3724 3.9596 20 6 3.9310 2.8149 -0.6399 21 6 3.3991 1.3786 -0.6098 22 1 3.3571 0.9849 -1.6253 23 6 4.3285 0.5075 0.2377 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8306 -0.5261 -0.7814 28 1 1.0630 1.8657 1.8789 29 1 2.7335 1.2672 2.0220 30 1 2.7196 3.6691 2.4587 31 1 1.8558 3.9740 0.9297 32 1 4.1301 5.2895 2.7045 33 1 4.5544 3.6992 3.3822 34 1 7.4843 7.1607 7.3226 35 1 3.3222 3.4159 -1.3153 36 1 4.9660 2.8164 -0.9818 37 1 4.3693 0.9009 1.2534 38 1 3.9497 -0.5144 0.2588 39 1 5.3288 0.5152 -0.1953 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722030558.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:04 Heat of formation + Delta-G solvation = -37.483538 kcal Electronic energy + Delta-G solvation = -19329.233426 eV Core-core repulsion = 16397.775247 eV Total energy + Delta-G solvation = -2931.458179 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.36033 -38.14418 -35.30414 -33.05641 -32.42632 -31.09683 -29.52086 -26.80362 -25.99946 -25.54143 -23.76928 -22.57044 -20.26348 -18.65077 -17.71775 -16.92110 -16.03695 -15.64049 -15.46852 -15.27432 -14.93345 -14.75780 -14.05251 -13.80277 -13.75106 -13.16451 -13.00624 -12.80878 -12.76243 -12.48319 -12.05002 -11.89038 -11.78271 -11.39685 -11.29275 -11.23553 -10.99739 -10.66715 -10.59532 -10.49676 -9.84409 -9.43022 -8.99163 -8.77235 -8.55784 -8.47126 -6.90381 -6.27778 -3.99288 2.73359 2.96001 3.21903 3.34267 3.51866 3.60666 3.86052 4.34127 4.39877 4.51241 4.68019 4.82845 4.94903 5.03564 5.07217 5.11119 5.11609 5.15624 5.29919 5.33388 5.45212 5.55639 5.58463 5.66984 5.73817 5.76058 5.78798 5.91963 5.99114 6.01411 6.08784 6.35700 6.60001 6.70320 7.03941 7.49772 7.95314 8.42610 8.47142 9.18591 10.81474 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.036532 B = 0.004155 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.268301 B = 6738.050330 C = 7140.953971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.688 5.688 3 C 0.092 3.908 4 H 0.044 0.956 5 C -0.125 4.125 6 C 0.107 3.893 7 N -0.615 5.615 8 C 0.535 3.465 9 O -0.520 6.520 10 C -0.121 4.121 11 S -0.143 6.143 12 C -0.520 4.520 13 H 0.088 0.912 14 C 0.096 3.904 15 N -0.881 5.881 16 Si 0.856 3.144 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 C 0.119 3.881 21 C -0.106 4.106 22 H 0.076 0.924 23 C -0.139 4.139 24 H 0.020 0.980 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.341 0.659 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.271 0.729 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.020 -12.185 -14.945 23.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.319 5.319 3 C -0.017 4.017 4 H 0.062 0.938 5 C -0.164 4.164 6 C -0.017 4.017 7 N -0.351 5.351 8 C 0.323 3.677 9 O -0.394 6.394 10 C -0.272 4.272 11 S 0.083 5.917 12 C -0.668 4.668 13 H 0.106 0.894 14 C -0.113 4.113 15 N -0.517 5.517 16 Si 0.681 3.319 17 H -0.192 1.192 18 H -0.200 1.200 19 H -0.159 1.159 20 C -0.004 4.004 21 C -0.126 4.126 22 H 0.094 0.906 23 C -0.196 4.196 24 H 0.038 0.962 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.159 0.841 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.350 -12.129 -14.973 22.364 hybrid contribution -0.904 0.459 -0.194 1.032 sum -12.254 -11.671 -15.168 22.725 Atomic orbital electron populations 1.22238 0.87906 1.01729 1.00368 1.60407 1.07536 1.14007 1.49963 1.21539 0.94635 0.89029 0.96522 0.93779 1.21899 1.02030 0.95791 0.96703 1.21668 0.84908 0.96803 0.98314 1.48020 1.10026 1.60843 1.16200 1.20271 0.82868 0.76994 0.87610 1.90680 1.28079 1.56097 1.64568 1.23311 1.04979 1.03542 0.95357 1.84787 1.09403 1.77362 1.20129 1.22313 1.01018 1.44979 0.98496 0.89414 1.24707 0.98989 0.93570 0.94015 1.69942 1.34555 1.38291 1.08956 0.86737 0.84023 0.81115 0.79994 1.19229 1.19954 1.15902 1.21540 1.03199 0.92154 0.83542 1.21674 0.94914 0.96416 0.99601 0.90561 1.21751 0.98177 0.99266 1.00455 0.96186 0.91553 0.91594 0.84101 0.90919 0.90077 0.88906 0.91629 0.88623 0.88508 0.91957 0.91999 0.88588 0.92007 0.92056 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.50 60.06 0.63 0.81 16 2 N -0.69 -5.47 5.98 -113.97 -0.68 -6.15 16 3 C 0.09 0.80 2.15 -67.68 -0.15 0.65 16 4 H 0.04 0.37 7.80 -51.93 -0.40 -0.03 16 5 C -0.13 -1.21 5.23 -26.83 -0.14 -1.35 16 6 C 0.11 1.15 6.31 -3.94 -0.02 1.12 16 7 N -0.61 -8.33 2.42 -173.03 -0.42 -8.75 16 8 C 0.53 9.73 7.72 -10.98 -0.08 9.65 16 9 O -0.52 -11.30 15.27 5.56 0.08 -11.21 16 10 C -0.12 -2.39 4.50 36.00 0.16 -2.22 16 11 S -0.14 -3.66 18.55 -107.50 -1.99 -5.66 16 12 C -0.52 -15.05 10.04 30.94 0.31 -14.74 16 13 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 14 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 15 N -0.88 -26.66 13.97 55.49 0.78 -25.88 16 16 Si 0.86 21.90 27.74 -169.99 -4.71 17.19 16 17 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 20 C 0.12 1.37 5.83 -3.71 -0.02 1.35 16 21 C -0.11 -0.99 2.59 -90.50 -0.23 -1.22 16 22 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 23 C -0.14 -1.51 8.56 37.16 0.32 -1.20 16 24 H 0.02 0.12 8.05 -51.93 -0.42 -0.29 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.46 7.41 -51.93 -0.38 0.07 16 27 H 0.34 2.35 8.34 -39.29 -0.33 2.02 16 28 H 0.07 0.63 7.42 -51.93 -0.39 0.24 16 29 H 0.08 0.91 6.33 -51.93 -0.33 0.59 16 30 H 0.09 1.04 5.93 -51.93 -0.31 0.73 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.10 1.76 7.95 -51.91 -0.41 1.34 16 33 H 0.10 1.79 7.68 -51.92 -0.40 1.39 16 34 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 1.29 7.00 -51.93 -0.36 0.93 16 37 H 0.06 0.80 5.97 -51.93 -0.31 0.49 16 38 H 0.06 0.60 7.59 -51.93 -0.39 0.21 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 318.30 15.07 4.80 4.80 Total: -1.00 -32.95 318.30 -7.60 -40.55 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.13 Total: -0.46 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 0.67 Total: -4.42 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: -0.32 Total: -40.79 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.21 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.19 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.95 -7.60 -40.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722030558.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.070 kcal (2) G-P(sol) polarization free energy of solvation -32.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds