Wall clock time and date at job start Mon Mar 30 2020 05:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46897 * 111.00375 * 2 1 4 4 H 1.08996 * 109.44666 * 324.96706 * 3 2 1 5 5 C 1.53040 * 109.45908 * 84.92868 * 3 2 1 6 6 C 1.52761 * 109.38299 * 181.25692 * 5 3 2 7 7 N 1.46918 * 109.01190 * 305.59408 * 6 5 3 8 8 C 1.34784 * 120.63039 * 233.58189 * 7 6 5 9 9 O 1.21274 * 119.99897 * 179.44672 * 8 7 6 10 10 C 1.50695 * 119.99635 * 359.71713 * 8 7 6 11 11 S 1.81006 * 109.46975 * 180.02562 * 10 8 7 12 12 C 1.76200 * 100.00155 * 179.97438 * 11 10 8 13 13 H 1.08005 * 119.99670 * 0.02562 * 12 11 10 14 14 C 1.38796 * 120.00050 * 180.02562 * 12 11 10 15 15 N 1.31631 * 119.99873 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99940 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.46850 * 90.00197 * 16 14 12 18 18 H 1.48497 * 109.47572 * 209.99914 * 16 14 12 19 19 H 1.48498 * 109.47329 * 330.00770 * 16 14 12 20 20 C 1.46931 * 118.74146 * 53.30689 * 7 6 5 21 21 C 1.53036 * 109.46184 * 204.99853 * 3 2 1 22 22 H 1.09001 * 109.52574 * 58.64772 * 21 3 2 23 23 C 1.53004 * 109.49665 * 298.56760 * 21 3 2 24 24 H 1.09002 * 109.46917 * 59.99754 * 1 2 3 25 25 H 1.08997 * 109.47895 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47438 * 300.00223 * 1 2 3 27 27 H 1.00902 * 111.00115 * 236.04470 * 2 1 3 28 28 H 1.08997 * 109.50389 * 301.33741 * 5 3 2 29 29 H 1.09005 * 109.49616 * 61.40313 * 5 3 2 30 30 H 1.08998 * 109.51072 * 185.70178 * 6 5 3 31 31 H 1.09001 * 109.42799 * 65.43250 * 6 5 3 32 32 H 1.09005 * 109.47403 * 300.00056 * 10 8 7 33 33 H 1.09002 * 109.47422 * 60.00295 * 10 8 7 34 34 H 0.97005 * 119.99693 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.58531 * 66.42734 * 20 7 6 36 36 H 1.09001 * 109.58745 * 186.71763 * 20 7 6 37 37 H 1.08999 * 109.46850 * 300.15914 * 23 21 3 38 38 H 1.09000 * 109.47449 * 60.16290 * 23 21 3 39 39 H 1.09003 * 109.47165 * 180.16250 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3399 2.0118 -0.5900 5 6 2.0591 1.8930 1.4373 6 6 2.5773 3.3301 1.4326 7 7 3.8596 3.3741 0.7170 8 6 4.9512 3.9122 1.2962 9 8 6.0064 3.9335 0.6988 10 6 4.8619 4.4818 2.6885 11 16 6.4802 5.1248 3.1823 12 6 6.0961 5.7119 4.7986 13 1 5.0932 5.6090 5.1863 14 6 7.0821 6.3066 5.5735 15 7 6.7952 6.7447 6.7811 16 14 8.8166 6.4839 4.9032 17 1 8.9420 7.7812 4.1914 18 1 9.7881 6.4392 6.0254 19 1 9.0987 5.3724 3.9596 20 6 3.9310 2.8149 -0.6399 21 6 3.3991 1.3786 -0.6098 22 1 3.3571 0.9849 -1.6253 23 6 4.3285 0.5075 0.2377 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8306 -0.5261 -0.7814 28 1 1.0630 1.8657 1.8789 29 1 2.7335 1.2672 2.0220 30 1 2.7196 3.6691 2.4587 31 1 1.8558 3.9740 0.9297 32 1 4.1301 5.2895 2.7045 33 1 4.5544 3.6992 3.3822 34 1 7.4843 7.1607 7.3226 35 1 3.3222 3.4159 -1.3153 36 1 4.9660 2.8164 -0.9818 37 1 4.3693 0.9009 1.2534 38 1 3.9497 -0.5144 0.2588 39 1 5.3288 0.5152 -0.1953 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722030558.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:03 Heat of formation + Delta-G solvation = -60.354031 kcal Electronic energy + Delta-G solvation = -19330.225165 eV Core-core repulsion = 16397.775247 eV Total energy + Delta-G solvation = -2932.449918 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.45442 -39.27004 -36.25223 -34.67726 -33.96959 -31.97702 -30.96588 -27.93417 -27.62158 -26.73853 -24.63283 -23.37084 -21.43759 -19.92494 -19.34449 -18.28627 -17.20382 -16.96488 -16.81332 -16.48256 -16.03879 -15.80618 -15.45712 -14.98541 -14.95101 -14.75438 -14.23165 -13.86937 -13.63206 -13.51744 -13.34625 -13.14072 -13.01802 -12.82858 -12.75415 -12.46694 -12.17017 -12.10847 -11.86880 -11.52703 -11.29911 -11.17473 -10.87547 -10.52467 -9.70113 -9.33276 -9.00732 -8.51971 -6.23010 0.97267 1.30897 1.45777 1.52628 1.54610 2.07973 2.24892 2.67844 2.86307 3.22957 3.49142 3.72021 3.79585 4.00931 4.14652 4.17070 4.24806 4.38811 4.47101 4.52128 4.55242 4.65487 4.71995 4.74123 4.80224 4.82441 4.95763 5.07707 5.10620 5.15933 5.27201 5.46556 5.58354 5.70419 6.10695 6.10885 6.25854 6.51351 6.93250 7.09471 8.60493 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.036532 B = 0.004155 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.268301 B = 6738.050330 C = 7140.953971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.698 5.698 3 C 0.099 3.901 4 H 0.057 0.943 5 C -0.121 4.121 6 C 0.101 3.899 7 N -0.601 5.601 8 C 0.535 3.465 9 O -0.563 6.563 10 C -0.106 4.106 11 S -0.176 6.176 12 C -0.528 4.528 13 H 0.062 0.938 14 C 0.047 3.953 15 N -0.917 5.917 16 Si 0.914 3.086 17 H -0.262 1.262 18 H -0.258 1.258 19 H -0.238 1.238 20 C 0.115 3.885 21 C -0.097 4.097 22 H 0.102 0.898 23 C -0.135 4.135 24 H 0.028 0.972 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.348 0.652 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.277 0.723 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.036 0.964 38 H 0.072 0.928 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.401 -13.026 -16.697 25.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.329 5.329 3 C -0.011 4.011 4 H 0.075 0.925 5 C -0.160 4.160 6 C -0.022 4.022 7 N -0.335 5.335 8 C 0.322 3.678 9 O -0.442 6.442 10 C -0.257 4.257 11 S 0.051 5.949 12 C -0.676 4.676 13 H 0.080 0.920 14 C -0.159 4.159 15 N -0.555 5.555 16 Si 0.736 3.264 17 H -0.186 1.186 18 H -0.183 1.183 19 H -0.162 1.162 20 C -0.008 4.008 21 C -0.117 4.117 22 H 0.120 0.880 23 C -0.192 4.192 24 H 0.046 0.954 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.167 0.833 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.787 -12.995 -16.733 24.746 hybrid contribution -0.662 0.632 0.313 0.967 sum -13.449 -12.363 -16.420 24.562 Atomic orbital electron populations 1.22257 0.86982 1.02355 1.00557 1.60362 1.08451 1.13500 1.50609 1.21441 0.94179 0.89842 0.95648 0.92475 1.21845 1.02172 0.94430 0.97518 1.21923 0.83855 0.98341 0.98047 1.48019 1.09643 1.58858 1.16932 1.19957 0.83532 0.77430 0.86845 1.90663 1.29877 1.58332 1.65289 1.23279 1.01300 1.04205 0.96922 1.84701 1.14374 1.77796 1.18071 1.22445 1.00024 1.44943 1.00187 0.91980 1.25547 1.02739 0.93297 0.94284 1.70016 1.36113 1.39215 1.10110 0.85876 0.79765 0.81038 0.79751 1.18627 1.18251 1.16174 1.21755 1.02714 0.93964 0.82358 1.21630 0.94842 0.94431 1.00764 0.88004 1.21698 0.98146 1.00211 0.99193 0.95376 0.90818 0.91932 0.83261 0.89432 0.92015 0.89545 0.89003 0.87136 0.87414 0.91339 0.89489 0.90739 0.94473 0.90934 0.94182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.50 127.69 1.34 1.62 16 2 N -0.70 -8.95 5.98 -514.50 -3.08 -12.03 16 3 C 0.10 1.39 2.15 44.94 0.10 1.48 16 4 H 0.06 0.71 7.80 -2.39 -0.02 0.69 16 5 C -0.12 -2.04 5.23 30.53 0.16 -1.88 16 6 C 0.10 1.93 6.31 86.22 0.54 2.48 16 7 N -0.60 -15.37 2.42 -819.75 -1.98 -17.35 16 8 C 0.54 19.26 7.72 87.65 0.68 19.94 16 9 O -0.56 -24.68 15.27 -3.01 -0.05 -24.73 16 10 C -0.11 -4.16 4.50 71.23 0.32 -3.84 16 11 S -0.18 -9.08 18.55 -56.49 -1.05 -10.12 16 12 C -0.53 -31.10 10.04 67.95 0.68 -30.42 16 13 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 14 C 0.05 2.77 5.50 84.86 0.47 3.23 16 15 N -0.92 -56.13 13.97 21.65 0.30 -55.83 16 16 Si 0.91 45.42 27.74 68.60 1.90 47.32 16 17 H -0.26 -12.66 7.11 99.48 0.71 -11.96 16 18 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.24 -11.85 6.74 99.48 0.67 -11.18 16 20 C 0.11 2.41 5.83 86.36 0.50 2.91 16 21 C -0.10 -1.56 2.59 -10.72 -0.03 -1.59 16 22 H 0.10 1.20 8.10 -2.39 -0.02 1.18 16 23 C -0.14 -2.79 8.56 71.98 0.62 -2.18 16 24 H 0.03 0.25 8.05 -2.39 -0.02 0.23 16 25 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.68 7.41 -2.39 -0.02 0.67 16 27 H 0.35 3.67 8.34 -89.69 -0.75 2.92 16 28 H 0.09 1.25 7.42 -2.39 -0.02 1.23 16 29 H 0.06 1.31 6.33 -2.38 -0.02 1.30 16 30 H 0.09 1.79 5.93 -2.39 -0.01 1.77 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.11 3.98 7.95 -2.39 -0.02 3.96 16 33 H 0.11 3.96 7.68 -2.39 -0.02 3.95 16 34 H 0.28 15.67 8.31 -92.70 -0.77 14.90 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.94 7.00 -2.39 -0.02 1.93 16 37 H 0.04 0.95 5.97 -2.39 -0.01 0.93 16 38 H 0.07 1.31 7.59 -2.39 -0.02 1.29 16 39 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -72.02 318.30 1.69 -70.34 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.26 Total: 10.63 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 5.38 Total: -8.22 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -4.76 Total: -85.21 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.05 Total: -24.73 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.90 Total: 47.32 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.05 Total: -10.12 kcal Total: -72.02 1.69 -70.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722030558.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.981 kcal (2) G-P(sol) polarization free energy of solvation -72.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds