Wall clock time and date at job start Mon Mar 30 2020 04:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46767 * 218.34929 * 3 2 1 5 5 C 1.36845 * 120.00106 * 96.29305 * 4 3 2 6 6 H 1.07998 * 120.00412 * 158.57273 * 5 4 3 7 7 C 1.38798 * 119.99473 * 338.29571 * 5 4 3 8 8 N 1.31596 * 120.00193 * 346.14953 * 7 5 4 9 9 Si 1.86809 * 119.99849 * 166.15357 * 7 5 4 10 10 H 1.48500 * 109.46748 * 59.99869 * 9 7 5 11 11 H 1.48497 * 109.46874 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47150 * 300.00020 * 9 7 5 13 13 C 1.39333 * 120.00132 * 276.28640 * 4 3 2 14 14 C 1.39476 * 120.50615 * 0.02562 * 13 4 3 15 15 C 1.38444 * 118.34430 * 180.02562 * 14 13 4 16 16 C 1.38315 * 119.25811 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.52122 * 179.97438 * 16 15 14 18 18 N 1.46901 * 109.47121 * 95.00264 * 17 16 15 19 19 C 1.46898 * 110.99685 * 179.97438 * 18 17 16 20 20 C 1.52996 * 117.49663 * 223.73901 * 19 18 17 21 21 C 1.53003 * 117.49632 * 155.08404 * 19 18 17 22 22 N 1.31892 * 120.95854 * 359.97438 * 16 15 14 23 23 C 1.31778 * 121.81704 * 359.70880 * 22 16 15 24 24 H 1.08995 * 109.46598 * 98.35108 * 3 2 1 25 25 H 1.09000 * 109.46818 * 338.34854 * 3 2 1 26 26 H 0.97007 * 119.99674 * 179.97438 * 8 7 5 27 27 H 1.08001 * 120.82959 * 0.02562 * 14 13 4 28 28 H 1.08003 * 120.37077 * 180.02562 * 15 14 13 29 29 H 1.09003 * 109.46940 * 214.99867 * 17 16 15 30 30 H 1.08997 * 109.47258 * 334.99703 * 17 16 15 31 31 H 1.00893 * 111.00491 * 56.04077 * 18 17 16 32 32 H 1.09000 * 115.54904 * 9.41701 * 19 18 17 33 33 H 1.08991 * 117.50019 * 0.02562 * 20 19 18 34 34 H 1.09006 * 117.49408 * 145.02581 * 20 19 18 35 35 H 1.09000 * 117.49629 * 214.97818 * 21 19 18 36 36 H 1.08999 * 117.49737 * 359.97077 * 21 19 18 37 37 H 1.07996 * 119.68370 * 180.29319 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.0841 0.8570 5 6 3.4464 0.8254 2.1542 6 1 4.1109 1.4964 2.6781 7 6 2.9434 -0.2965 2.7984 8 7 1.9324 -0.9573 2.2760 9 14 3.7015 -0.8682 4.4072 10 1 3.5837 0.2107 5.4208 11 1 2.9881 -2.0785 4.8880 12 1 5.1350 -1.1907 4.1918 13 6 3.2028 2.3780 0.3512 14 6 2.8480 2.6537 -0.9692 15 6 2.9726 3.9549 -1.4253 16 6 3.4403 4.9311 -0.5643 17 6 3.5788 6.3494 -1.0547 18 7 2.3714 7.1090 -0.7037 19 6 2.4712 8.4995 -1.1666 20 6 2.0215 9.5990 -0.2025 21 6 1.1651 9.2540 -1.4234 22 7 3.7668 4.6389 0.6797 23 6 3.6582 3.4155 1.1574 24 1 2.9712 0.1501 -1.0168 25 1 2.9717 -0.9544 0.3792 26 1 1.5811 -1.7415 2.7261 27 1 2.4851 1.8716 -1.6196 28 1 2.7068 4.2050 -2.4417 29 1 4.4479 6.8122 -0.5872 30 1 3.7058 6.3487 -2.1372 31 1 2.1957 7.0704 0.2891 32 1 3.3155 8.7178 -1.8206 33 1 1.6520 9.2906 0.7754 34 1 2.5697 10.5409 -0.2223 35 1 1.1504 9.9691 -2.2459 36 1 0.2319 8.7185 -1.2492 37 1 3.9310 3.2157 2.1831 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723153979.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:31 Heat of formation + Delta-G solvation = 107.976261 kcal Electronic energy + Delta-G solvation = -19785.115503 eV Core-core repulsion = 16756.813734 eV Total energy + Delta-G solvation = -3028.301769 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.50089 -37.82156 -36.90277 -34.81701 -33.47461 -32.31542 -31.07386 -29.31748 -27.70991 -25.34333 -23.47039 -22.40813 -22.33918 -21.13073 -20.48617 -18.06603 -17.13016 -16.52197 -15.98715 -15.74352 -15.27404 -14.65727 -14.32194 -14.04441 -13.75173 -13.37675 -13.13290 -12.94498 -12.71054 -12.15152 -12.00565 -11.94947 -11.73386 -11.54093 -11.43200 -11.26141 -11.10810 -10.76397 -10.72668 -10.60465 -10.39566 -10.27606 -10.02284 -9.01977 -8.65519 -8.58874 -8.06742 -6.98813 -6.64847 -4.06181 2.14027 2.27900 3.06427 3.09278 3.11103 3.60172 3.83227 3.93326 4.04894 4.19101 4.63706 4.78297 4.89785 4.90819 4.96390 5.14456 5.24308 5.32707 5.44147 5.60985 5.64606 5.72494 5.83796 5.87124 5.96057 6.05121 6.13553 6.20320 6.32821 6.46399 6.62679 6.99573 7.05643 7.17103 7.21928 7.38059 7.52010 7.76797 8.29657 8.76027 8.87225 9.06119 9.21380 10.36287 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024097 B = 0.004122 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.699818 B = 6790.567896 C = 7312.775765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.247 3.753 3 C 0.232 3.768 4 N -0.434 5.434 5 C -0.314 4.314 6 H 0.106 0.894 7 C 0.030 3.970 8 N -0.875 5.875 9 Si 0.934 3.066 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.167 3.833 14 C -0.204 4.204 15 C -0.087 4.087 16 C -0.007 4.007 17 C 0.135 3.865 18 N -0.655 5.655 19 C 0.027 3.973 20 C -0.210 4.210 21 C -0.175 4.175 22 N -0.440 5.440 23 C 0.016 3.984 24 H 0.081 0.919 25 H 0.128 0.872 26 H 0.277 0.723 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.348 0.652 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.926 9.214 -5.702 11.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.071 4.071 3 C 0.105 3.895 4 N -0.122 5.122 5 C -0.441 4.441 6 H 0.124 0.876 7 C -0.174 4.174 8 N -0.511 5.511 9 Si 0.760 3.240 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.049 3.951 14 C -0.235 4.235 15 C -0.108 4.108 16 C -0.146 4.146 17 C 0.007 3.993 18 N -0.286 5.286 19 C -0.084 4.084 20 C -0.249 4.249 21 C -0.214 4.214 22 N -0.148 5.148 23 C -0.152 4.152 24 H 0.099 0.901 25 H 0.146 0.854 26 H 0.088 0.912 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.168 0.832 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.067 9.148 -5.548 11.130 hybrid contribution 0.768 -0.794 1.026 1.507 sum 3.835 8.355 -4.522 10.245 Atomic orbital electron populations 1.80883 1.13710 1.09359 1.11589 1.29341 0.95376 0.92002 0.90366 1.18686 0.81637 0.94877 0.94331 1.42445 1.57371 1.01934 1.10440 1.19658 1.26405 1.10357 0.87684 0.87620 1.25374 0.94824 0.97373 0.99874 1.69839 1.21067 1.19584 1.40568 0.85851 0.79027 0.78434 0.80707 1.19608 1.20796 1.19526 1.18995 0.96599 0.86125 0.93400 1.20775 1.10246 0.97226 0.95207 1.21317 0.97336 0.92709 0.99435 1.20088 1.08738 0.94617 0.91162 1.20457 0.90205 0.89443 0.99224 1.60330 1.37858 1.08591 1.21799 1.22421 0.97796 0.86607 1.01622 1.23418 1.05451 1.00608 0.95444 1.23113 0.96352 1.02872 0.99041 1.67045 1.12380 1.21188 1.14233 1.22015 1.06528 0.86784 0.99899 0.90084 0.85406 0.91216 0.86522 0.86747 0.94471 0.90740 0.83246 0.87560 0.88781 0.89078 0.89057 0.88527 0.83344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.57 18.54 42.15 0.78 -10.79 16 2 C 0.25 5.54 13.28 -20.76 -0.28 5.26 16 3 C 0.23 4.57 4.81 -6.83 -0.03 4.54 16 4 N -0.43 -9.40 2.70 -116.13 -0.31 -9.72 16 5 C -0.31 -7.14 9.08 -15.11 -0.14 -7.28 16 6 H 0.11 2.32 6.15 -52.49 -0.32 2.00 16 7 C 0.03 0.69 5.02 -17.45 -0.09 0.60 16 8 N -0.87 -21.05 9.20 55.49 0.51 -20.54 16 9 Si 0.93 18.23 29.58 -169.99 -5.03 13.20 16 10 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 11 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 12 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 13 C 0.17 3.49 6.48 -83.68 -0.54 2.94 16 14 C -0.20 -3.86 9.20 -39.04 -0.36 -4.22 16 15 C -0.09 -1.53 9.71 -39.48 -0.38 -1.91 16 16 C -0.01 -0.12 6.29 -82.54 -0.52 -0.64 16 17 C 0.14 1.99 5.84 -4.97 -0.03 1.96 16 18 N -0.65 -9.36 6.77 -107.99 -0.73 -10.09 16 19 C 0.03 0.31 6.31 -67.71 -0.43 -0.12 16 20 C -0.21 -2.17 10.23 -26.70 -0.27 -2.44 16 21 C -0.18 -1.86 10.46 -26.69 -0.28 -2.14 16 22 N -0.44 -8.74 10.26 -9.25 -0.09 -8.84 16 23 C 0.02 0.33 10.45 -17.27 -0.18 0.15 16 24 H 0.08 1.30 6.60 -51.93 -0.34 0.96 16 25 H 0.13 2.55 6.48 -51.93 -0.34 2.22 16 26 H 0.28 6.55 8.31 -40.82 -0.34 6.21 16 27 H 0.12 2.03 6.32 -52.49 -0.33 1.70 16 28 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.97 8.04 -51.93 -0.42 0.56 16 31 H 0.35 5.27 8.51 -39.30 -0.33 4.94 16 32 H 0.11 1.11 7.90 -51.93 -0.41 0.70 16 33 H 0.09 1.01 8.08 -51.93 -0.42 0.59 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.15 3.06 6.17 -52.49 -0.32 2.73 16 LS Contribution 318.73 15.07 4.80 4.80 Total: -1.00 -26.64 318.73 -8.09 -34.72 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -4.49 Total: 10.54 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -3.53 Total: -3.29 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: 0.15 Total: -59.97 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.64 -8.09 -34.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723153979.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.701 kcal (2) G-P(sol) polarization free energy of solvation -26.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds