Wall clock time and date at job start Mon Mar 30 2020 04:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46767 * 218.34929 * 3 2 1 5 5 C 1.36845 * 120.00106 * 96.29305 * 4 3 2 6 6 H 1.07998 * 120.00412 * 158.57273 * 5 4 3 7 7 C 1.38798 * 119.99473 * 338.29571 * 5 4 3 8 8 N 1.31596 * 120.00193 * 346.14953 * 7 5 4 9 9 Si 1.86809 * 119.99849 * 166.15357 * 7 5 4 10 10 H 1.48500 * 109.46748 * 59.99869 * 9 7 5 11 11 H 1.48497 * 109.46874 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47150 * 300.00020 * 9 7 5 13 13 C 1.39333 * 120.00132 * 276.28640 * 4 3 2 14 14 C 1.39476 * 120.50615 * 0.02562 * 13 4 3 15 15 C 1.38444 * 118.34430 * 180.02562 * 14 13 4 16 16 C 1.38315 * 119.25811 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.52122 * 179.97438 * 16 15 14 18 18 N 1.46901 * 109.47121 * 95.00264 * 17 16 15 19 19 C 1.46898 * 110.99685 * 179.97438 * 18 17 16 20 20 C 1.52996 * 117.49663 * 223.73901 * 19 18 17 21 21 C 1.53003 * 117.49632 * 155.08404 * 19 18 17 22 22 N 1.31892 * 120.95854 * 359.97438 * 16 15 14 23 23 C 1.31778 * 121.81704 * 359.70880 * 22 16 15 24 24 H 1.08995 * 109.46598 * 98.35108 * 3 2 1 25 25 H 1.09000 * 109.46818 * 338.34854 * 3 2 1 26 26 H 0.97007 * 119.99674 * 179.97438 * 8 7 5 27 27 H 1.08001 * 120.82959 * 0.02562 * 14 13 4 28 28 H 1.08003 * 120.37077 * 180.02562 * 15 14 13 29 29 H 1.09003 * 109.46940 * 214.99867 * 17 16 15 30 30 H 1.08997 * 109.47258 * 334.99703 * 17 16 15 31 31 H 1.00893 * 111.00491 * 56.04077 * 18 17 16 32 32 H 1.09000 * 115.54904 * 9.41701 * 19 18 17 33 33 H 1.08991 * 117.50019 * 0.02562 * 20 19 18 34 34 H 1.09006 * 117.49408 * 145.02581 * 20 19 18 35 35 H 1.09000 * 117.49629 * 214.97818 * 21 19 18 36 36 H 1.08999 * 117.49737 * 359.97077 * 21 19 18 37 37 H 1.07996 * 119.68370 * 180.29319 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.0841 0.8570 5 6 3.4464 0.8254 2.1542 6 1 4.1109 1.4964 2.6781 7 6 2.9434 -0.2965 2.7984 8 7 1.9324 -0.9573 2.2760 9 14 3.7015 -0.8682 4.4072 10 1 3.5837 0.2107 5.4208 11 1 2.9881 -2.0785 4.8880 12 1 5.1350 -1.1907 4.1918 13 6 3.2028 2.3780 0.3512 14 6 2.8480 2.6537 -0.9692 15 6 2.9726 3.9549 -1.4253 16 6 3.4403 4.9311 -0.5643 17 6 3.5788 6.3494 -1.0547 18 7 2.3714 7.1090 -0.7037 19 6 2.4712 8.4995 -1.1666 20 6 2.0215 9.5990 -0.2025 21 6 1.1651 9.2540 -1.4234 22 7 3.7668 4.6389 0.6797 23 6 3.6582 3.4155 1.1574 24 1 2.9712 0.1501 -1.0168 25 1 2.9717 -0.9544 0.3792 26 1 1.5811 -1.7415 2.7261 27 1 2.4851 1.8716 -1.6196 28 1 2.7068 4.2050 -2.4417 29 1 4.4479 6.8122 -0.5872 30 1 3.7058 6.3487 -2.1372 31 1 2.1957 7.0704 0.2891 32 1 3.3155 8.7178 -1.8206 33 1 1.6520 9.2906 0.7754 34 1 2.5697 10.5409 -0.2223 35 1 1.1504 9.9691 -2.2459 36 1 0.2319 8.7185 -1.2492 37 1 3.9310 3.2157 2.1831 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723153979.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:31 Heat of formation + Delta-G solvation = 92.650219 kcal Electronic energy + Delta-G solvation = -19785.780090 eV Core-core repulsion = 16756.813734 eV Total energy + Delta-G solvation = -3028.966356 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.02345 -38.94634 -38.30060 -36.56485 -34.74890 -33.85449 -32.58622 -30.79309 -29.26783 -26.80977 -24.95139 -23.89529 -23.18511 -22.08038 -21.92592 -19.71481 -18.72367 -18.08765 -17.07653 -16.92323 -16.75574 -16.19132 -15.68547 -15.43892 -15.08778 -14.86210 -14.51035 -14.44343 -14.00735 -13.67952 -13.48652 -13.42339 -13.20408 -13.02835 -12.82366 -12.54458 -12.36732 -12.29615 -12.20820 -11.94510 -11.72794 -11.61496 -11.19181 -10.65226 -10.18364 -10.10615 -9.12179 -8.60549 -8.33154 -5.79917 0.62668 0.75064 1.49414 1.51582 1.57512 1.93532 2.25871 2.36088 2.84026 2.98140 3.13765 3.18947 3.46912 3.66526 3.86328 4.04088 4.09249 4.16265 4.25323 4.32313 4.47272 4.55975 4.60455 4.81242 4.83217 4.85251 4.91097 4.97928 5.10591 5.12301 5.32350 5.38415 5.53543 5.56289 5.80021 6.13632 6.23547 6.36698 6.63147 7.03091 7.24619 7.51028 7.55188 8.65178 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024097 B = 0.004122 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.699818 B = 6790.567896 C = 7312.775765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C 0.261 3.739 3 C 0.235 3.765 4 N -0.454 5.454 5 C -0.323 4.323 6 H 0.105 0.895 7 C -0.007 4.007 8 N -0.904 5.904 9 Si 0.990 3.010 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.260 1.260 13 C 0.152 3.848 14 C -0.200 4.200 15 C -0.089 4.089 16 C 0.002 3.998 17 C 0.140 3.860 18 N -0.666 5.666 19 C 0.014 3.986 20 C -0.204 4.204 21 C -0.172 4.172 22 N -0.454 5.454 23 C -0.005 4.005 24 H 0.121 0.879 25 H 0.124 0.876 26 H 0.270 0.730 27 H 0.134 0.866 28 H 0.148 0.852 29 H 0.039 0.961 30 H 0.098 0.902 31 H 0.338 0.662 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.805 10.973 -7.288 14.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.200 5.200 2 C -0.056 4.056 3 C 0.108 3.892 4 N -0.145 5.145 5 C -0.450 4.450 6 H 0.122 0.878 7 C -0.208 4.208 8 N -0.542 5.542 9 Si 0.815 3.185 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.185 1.185 13 C 0.037 3.963 14 C -0.231 4.231 15 C -0.110 4.110 16 C -0.139 4.139 17 C 0.011 3.989 18 N -0.296 5.296 19 C -0.097 4.097 20 C -0.243 4.243 21 C -0.210 4.210 22 N -0.163 5.163 23 C -0.171 4.171 24 H 0.139 0.861 25 H 0.141 0.859 26 H 0.080 0.920 27 H 0.152 0.848 28 H 0.165 0.835 29 H 0.057 0.943 30 H 0.116 0.884 31 H 0.157 0.843 32 H 0.141 0.859 33 H 0.104 0.896 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.972 10.943 -7.141 13.657 hybrid contribution 0.511 -1.066 1.387 1.823 sum 4.483 9.877 -5.753 12.278 Atomic orbital electron populations 1.80870 1.15057 1.10837 1.13196 1.29989 0.95988 0.90666 0.88998 1.18907 0.79882 0.94366 0.96080 1.42476 1.59011 1.02539 1.10430 1.19839 1.26243 1.10371 0.88590 0.87774 1.25979 0.95096 0.97539 1.02181 1.69942 1.22522 1.20044 1.41687 0.84990 0.78632 0.77267 0.77578 1.20161 1.21569 1.18493 1.19223 0.96719 0.86094 0.94260 1.21105 1.08976 0.98434 0.94539 1.21719 0.96358 0.91937 1.00939 1.20789 1.06177 0.96544 0.90383 1.20503 0.90550 0.87422 1.00455 1.60327 1.37565 1.10521 1.21206 1.22555 0.99015 0.85432 1.02655 1.23458 1.05121 1.00819 0.94915 1.23159 0.95288 1.02771 0.99829 1.67095 1.13043 1.20717 1.15402 1.22009 1.07626 0.87483 0.99993 0.86133 0.85855 0.91964 0.84783 0.83456 0.94280 0.88381 0.84311 0.85944 0.89616 0.87248 0.87055 0.89841 0.84220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -25.42 18.54 20.01 0.37 -25.05 16 2 C 0.26 11.66 13.28 89.45 1.19 12.85 16 3 C 0.23 9.09 4.81 84.58 0.41 9.50 16 4 N -0.45 -19.60 2.70 -521.31 -1.41 -21.01 16 5 C -0.32 -14.87 9.08 84.05 0.76 -14.10 16 6 H 0.10 4.67 6.15 -2.91 -0.02 4.65 16 7 C -0.01 -0.32 5.02 84.86 0.43 0.10 16 8 N -0.90 -44.30 9.20 21.65 0.20 -44.10 16 9 Si 0.99 37.95 29.58 68.60 2.03 39.97 16 10 H -0.28 -10.68 7.11 99.48 0.71 -9.97 16 11 H -0.29 -11.33 7.11 99.48 0.71 -10.63 16 12 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 13 C 0.15 6.26 6.48 38.45 0.25 6.51 16 14 C -0.20 -7.13 9.20 22.62 0.21 -6.92 16 15 C -0.09 -2.86 9.71 22.34 0.22 -2.64 16 16 C 0.00 0.06 6.29 42.57 0.27 0.32 16 17 C 0.14 3.69 5.84 85.56 0.50 4.19 16 18 N -0.67 -17.54 6.77 -495.58 -3.35 -20.90 16 19 C 0.01 0.28 6.31 44.92 0.28 0.57 16 20 C -0.20 -3.73 10.23 30.62 0.31 -3.42 16 21 C -0.17 -3.21 10.46 30.62 0.32 -2.88 16 22 N -0.45 -17.63 10.26 -183.18 -1.88 -19.51 16 23 C -0.01 -0.22 10.45 84.90 0.89 0.66 16 24 H 0.12 3.61 6.60 -2.39 -0.02 3.60 16 25 H 0.12 4.93 6.48 -2.39 -0.02 4.91 16 26 H 0.27 13.11 8.31 -92.70 -0.77 12.34 16 27 H 0.13 4.27 6.32 -2.91 -0.02 4.25 16 28 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 2.15 8.04 -2.39 -0.02 2.13 16 31 H 0.34 9.83 8.51 -89.70 -0.76 9.07 16 32 H 0.12 2.11 7.90 -2.39 -0.02 2.09 16 33 H 0.09 1.71 8.08 -2.39 -0.02 1.69 16 34 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.14 5.93 6.17 -2.91 -0.02 5.91 16 Total: -1.00 -57.15 318.73 2.33 -54.82 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.34 Total: 31.02 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 6.03 Total: 4.75 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -6.07 Total: -130.56 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.97 kcal Total: -57.15 2.33 -54.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723153979.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.472 kcal (2) G-P(sol) polarization free energy of solvation -57.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds