Wall clock time and date at job start Mon Mar 30 2020 04:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30501 * 125.65188 * 2 1 4 4 C 1.34124 * 109.25795 * 179.74046 * 3 2 1 5 5 C 1.34668 * 108.02386 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.59167 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.46948 * 94.97610 * 6 5 4 8 8 C 1.39855 * 119.99902 * 179.97438 * 7 6 5 9 9 C 1.39596 * 119.83941 * 359.72681 * 8 7 6 10 10 C 1.38062 * 120.55163 * 179.71625 * 9 8 7 11 11 C 1.38741 * 120.21626 * 0.55558 * 10 9 8 12 12 N 1.38866 * 120.16001 * 179.74185 * 11 10 9 13 13 C 1.41555 * 119.67440 * 359.72647 * 11 10 9 14 14 C 1.41031 * 120.26727 * 179.97438 * 13 11 10 15 15 H 1.07989 * 120.00117 * 25.56370 * 14 13 11 16 16 C 1.39885 * 119.99768 * 205.57078 * 14 13 11 17 17 N 1.30903 * 120.00140 * 15.34340 * 16 14 13 18 18 Si 1.86796 * 119.99908 * 195.34538 * 16 14 13 19 19 H 1.48502 * 109.47417 * 94.96645 * 18 16 14 20 20 H 1.48500 * 109.47255 * 214.96619 * 18 16 14 21 21 H 1.48503 * 109.47410 * 334.96405 * 18 16 14 22 22 C 1.38010 * 119.84105 * 179.97438 * 8 7 6 23 23 N 1.35049 * 125.65067 * 179.69377 * 2 1 3 24 24 H 0.96992 * 126.39434 * 0.26346 * 23 2 1 25 25 H 1.09003 * 109.47327 * 90.02189 * 1 2 3 26 26 H 1.08998 * 109.47037 * 210.02468 * 1 2 3 27 27 H 1.08998 * 109.46878 * 330.02140 * 1 2 3 28 28 H 1.08003 * 125.99133 * 179.97438 * 4 3 2 29 29 H 1.09007 * 109.46932 * 214.97196 * 6 5 4 30 30 H 1.08988 * 109.47134 * 334.97536 * 6 5 4 31 31 H 0.97001 * 120.00662 * 359.97438 * 7 6 5 32 32 H 1.08004 * 119.72816 * 0.02562 * 9 8 7 33 33 H 1.07997 * 119.89538 * 180.27738 * 10 9 8 34 34 H 0.96996 * 119.99677 * 179.97438 * 12 11 10 35 35 H 0.96999 * 120.00078 * 359.97438 * 12 11 10 36 36 H 0.97003 * 119.99895 * 179.97438 * 17 16 14 37 37 H 1.08004 * 120.11437 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 0.0057 5 6 3.5926 -0.6643 0.0100 6 6 4.8276 -1.5278 0.0176 7 7 5.1536 -1.9016 1.3960 8 6 6.2664 -2.7073 1.6575 9 6 7.0609 -3.1582 0.6020 10 6 8.1662 -3.9495 0.8438 11 6 8.4927 -4.3150 2.1417 12 7 9.6016 -5.1154 2.3831 13 6 7.6902 -3.8679 3.2186 14 6 8.0103 -4.2325 4.5429 15 1 9.0289 -4.4784 4.8040 16 6 7.0083 -4.2756 5.5181 17 7 5.7485 -4.2767 5.1625 18 14 7.4681 -4.3316 7.3277 19 1 7.4580 -2.9547 7.8839 20 1 6.4863 -5.1693 8.0622 21 1 8.8255 -4.9153 7.4758 22 6 6.5708 -3.0570 2.9574 23 7 2.2941 -1.0974 0.0059 24 1 1.9951 -2.0201 0.0072 25 1 -0.3634 -0.0004 -1.0277 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3633 0.8902 0.5135 28 1 4.4098 1.3411 0.0068 29 1 4.6451 -2.4280 -0.5695 30 1 5.6606 -0.9742 -0.4154 31 1 4.5977 -1.5903 2.1275 32 1 6.8118 -2.8817 -0.4119 33 1 8.7760 -4.2887 0.0195 34 1 9.8279 -5.3692 3.2914 35 1 10.1498 -5.4205 1.6433 36 1 5.0537 -4.3070 5.8387 37 1 5.9518 -2.7093 3.7713 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724683696.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:14 Heat of formation + Delta-G solvation = 75.847374 kcal Electronic energy + Delta-G solvation = -19722.303589 eV Core-core repulsion = 16692.608607 eV Total energy + Delta-G solvation = -3029.694982 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.06107 -37.96589 -35.50761 -33.48889 -32.71901 -32.37255 -31.13595 -29.44223 -28.42399 -26.12432 -24.79810 -23.98417 -21.38899 -20.89685 -20.42970 -19.70646 -17.44321 -17.13192 -16.01748 -15.54625 -15.39145 -14.95797 -14.67797 -14.27969 -14.20329 -13.58225 -13.14769 -13.00758 -12.77876 -12.61260 -12.42760 -12.12472 -11.89524 -11.76180 -11.37541 -11.12153 -11.03554 -10.39960 -10.11007 -9.99330 -9.87640 -9.76168 -9.37780 -9.09077 -8.26538 -7.82640 -7.25660 -6.63838 -5.59128 -4.09833 1.97037 2.88405 3.08141 3.11370 3.12385 3.14859 3.28311 3.44200 4.01348 4.40588 4.56396 4.79036 4.91145 5.06544 5.29716 5.34232 5.40120 5.46661 5.69897 5.81754 5.87986 5.88700 6.32696 6.37152 6.57995 6.76728 7.06347 7.11250 7.29059 7.36748 7.44663 7.65053 7.84092 7.96007 8.07163 8.09036 8.42448 8.69348 8.84229 8.90189 8.96921 9.22986 9.30741 10.34607 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019155 B = 0.004380 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.416629 B = 6391.582388 C = 7537.108755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.202 3.798 3 N -0.493 5.493 4 C -0.010 4.010 5 C -0.028 4.028 6 C 0.214 3.786 7 N -0.760 5.760 8 C 0.175 3.825 9 C -0.255 4.255 10 C -0.153 4.153 11 C 0.087 3.913 12 N -0.889 5.889 13 C 0.095 3.905 14 C -0.463 4.463 15 H 0.072 0.928 16 C 0.076 3.924 17 N -0.801 5.801 18 Si 0.903 3.097 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.265 1.265 22 C -0.199 4.199 23 N -0.558 5.558 24 H 0.419 0.581 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.171 0.829 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.389 0.611 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.389 0.611 35 H 0.374 0.626 36 H 0.274 0.726 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.762 3.504 -7.199 10.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.062 4.062 3 N -0.214 5.214 4 C -0.159 4.159 5 C -0.143 4.143 6 C 0.088 3.912 7 N -0.397 5.397 8 C 0.077 3.923 9 C -0.279 4.279 10 C -0.177 4.177 11 C -0.014 4.014 12 N -0.431 5.431 13 C 0.089 3.911 14 C -0.494 4.494 15 H 0.090 0.910 16 C -0.140 4.140 17 N -0.428 5.428 18 Si 0.728 3.272 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.189 1.189 22 C -0.223 4.223 23 N -0.162 5.162 24 H 0.257 0.743 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.188 0.812 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.222 0.778 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.217 0.783 35 H 0.199 0.801 36 H 0.085 0.915 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.305 4.386 -7.295 11.217 hybrid contribution 0.378 -1.477 1.145 1.907 sum -6.926 2.909 -6.150 9.708 Atomic orbital electron populations 1.20163 0.84967 1.04044 1.03361 1.23243 0.95531 0.81850 1.05562 1.70232 1.02213 1.28627 1.20283 1.22161 0.94672 0.92133 1.06943 1.21479 0.85498 0.95864 1.11504 1.19307 0.89977 0.95205 0.86736 1.44376 1.31514 1.59084 1.04678 1.17501 0.87592 0.93245 0.93970 1.19597 1.01199 1.11795 0.95334 1.19701 0.99713 1.04752 0.93573 1.17873 0.92430 0.98181 0.92952 1.41820 1.31459 1.60645 1.09223 1.16974 0.91453 0.91275 0.91350 1.19163 0.95071 1.41979 0.93178 0.91036 1.25750 0.94528 0.92859 1.00842 1.69876 1.00291 1.37404 1.35269 0.86395 0.79291 0.78848 0.82635 1.19642 1.20597 1.18873 1.20527 1.03247 1.05554 0.93017 1.43161 1.06419 1.10060 1.56547 0.74329 0.90301 0.90834 0.89201 0.81215 0.92902 0.90951 0.77771 0.89707 0.89712 0.78317 0.80077 0.91502 0.86308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.51 36.00 0.38 -0.16 16 2 C 0.20 2.52 8.15 -155.41 -1.27 1.26 16 3 N -0.49 -7.48 11.25 -10.82 -0.12 -7.60 16 4 C -0.01 -0.15 11.79 -17.81 -0.21 -0.36 16 5 C -0.03 -0.39 6.61 -81.60 -0.54 -0.93 16 6 C 0.21 3.27 5.46 -5.20 -0.03 3.25 16 7 N -0.76 -14.33 5.73 -59.82 -0.34 -14.68 16 8 C 0.17 3.99 6.64 -83.77 -0.56 3.44 16 9 C -0.26 -5.66 9.31 -39.14 -0.36 -6.02 16 10 C -0.15 -3.45 9.86 -39.46 -0.39 -3.84 16 11 C 0.09 2.08 6.79 -83.23 -0.56 1.51 16 12 N -0.89 -18.03 8.98 32.75 0.29 -17.74 16 13 C 0.09 2.49 5.58 -106.66 -0.60 1.90 16 14 C -0.46 -12.08 8.50 -37.91 -0.32 -12.41 16 15 H 0.07 1.78 6.67 -52.49 -0.35 1.43 16 16 C 0.08 1.91 5.18 -17.33 -0.09 1.82 16 17 N -0.80 -20.86 10.88 55.55 0.60 -20.26 16 18 Si 0.90 18.93 29.59 -169.99 -5.03 13.90 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 21 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 22 C -0.20 -5.12 8.50 -38.75 -0.33 -5.45 16 23 N -0.56 -6.79 6.15 -6.54 -0.04 -6.83 16 24 H 0.42 4.11 8.96 -40.82 -0.37 3.74 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.17 2.25 8.06 -52.48 -0.42 1.82 16 29 H 0.05 0.80 7.93 -51.93 -0.41 0.39 16 30 H 0.07 1.09 7.95 -51.94 -0.41 0.67 16 31 H 0.39 7.38 8.47 -40.82 -0.35 7.03 16 32 H 0.08 1.68 6.69 -52.48 -0.35 1.33 16 33 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.39 7.75 7.04 -40.82 -0.29 7.46 16 35 H 0.37 6.40 8.83 -40.82 -0.36 6.04 16 36 H 0.27 6.58 8.30 -40.82 -0.34 6.25 16 37 H 0.12 3.21 6.14 -52.48 -0.32 2.88 16 LS Contribution 314.31 15.07 4.74 4.74 Total: -1.00 -30.21 314.31 -9.23 -39.45 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: -4.46 Total: 25.02 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -4.88 Total: -16.00 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: 0.39 Total: -67.10 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.21 -9.23 -39.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724683696.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.293 kcal (2) G-P(sol) polarization free energy of solvation -30.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds