Wall clock time and date at job start Mon Mar 30 2020 05:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47446 * 2 1 4 4 C 1.50699 * 109.47007 * 120.00094 * 2 1 3 5 5 H 1.08001 * 120.00016 * 85.93996 * 4 2 1 6 6 C 1.37873 * 120.00043 * 265.93984 * 4 2 1 7 7 N 1.31520 * 120.00097 * 177.91068 * 6 4 2 8 8 Si 1.86794 * 120.00130 * 357.90667 * 6 4 2 9 9 H 1.48497 * 109.47256 * 274.93750 * 8 6 4 10 10 H 1.48509 * 109.46882 * 34.93646 * 8 6 4 11 11 H 1.48503 * 109.47117 * 154.93176 * 8 6 4 12 12 O 1.45201 * 109.47061 * 239.99743 * 2 1 3 13 13 C 1.34234 * 116.99654 * 90.00561 * 12 2 1 14 14 O 1.20826 * 120.00074 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99979 * 179.97438 * 13 12 2 16 16 C 1.52996 * 109.46971 * 179.97438 * 15 13 12 17 17 O 1.42903 * 109.47076 * 179.97438 * 16 15 13 18 18 C 1.42906 * 114.00136 * 179.97438 * 17 16 15 19 19 C 1.53175 * 109.54345 * 269.55875 * 18 17 16 20 20 C 1.53095 * 109.16176 * 183.15099 * 19 18 17 21 21 O 1.42906 * 109.41280 * 57.60718 * 20 19 18 22 22 C 1.42898 * 114.10154 * 298.84671 * 21 20 19 23 23 C 1.53094 * 109.41707 * 61.15287 * 22 21 20 24 24 H 1.08999 * 109.46923 * 56.64323 * 1 2 3 25 25 H 1.09001 * 109.47004 * 176.63712 * 1 2 3 26 26 H 1.08991 * 109.47202 * 296.63782 * 1 2 3 27 27 H 0.96997 * 120.00292 * 179.97438 * 7 6 4 28 28 H 1.08993 * 109.46812 * 299.99482 * 15 13 12 29 29 H 1.08998 * 109.47026 * 59.99985 * 15 13 12 30 30 H 1.09001 * 109.47555 * 299.99667 * 16 15 13 31 31 H 1.08999 * 109.47351 * 60.00018 * 16 15 13 32 32 H 1.09001 * 109.53724 * 29.83028 * 18 17 16 33 33 H 1.08991 * 109.52479 * 303.05841 * 19 18 17 34 34 H 1.09004 * 109.52120 * 63.25096 * 19 18 17 35 35 H 1.09000 * 109.47736 * 297.62813 * 20 19 18 36 36 H 1.08993 * 109.48232 * 177.58968 * 20 19 18 37 37 H 1.09003 * 109.47606 * 301.17385 * 22 21 20 38 38 H 1.08993 * 109.49351 * 181.14598 * 22 21 20 39 39 H 1.09005 * 109.51887 * 182.48558 * 23 22 21 40 40 H 1.08994 * 109.51892 * 62.29856 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.1499 -1.7840 1.2240 6 6 2.3418 0.0101 2.3644 7 7 2.7409 -0.6136 3.4514 8 14 2.1944 1.8722 2.3571 9 1 3.4425 2.4655 1.8136 10 1 1.0444 2.2743 1.5077 11 1 1.9788 2.3572 3.7440 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9975 1.2517 -2.2506 15 6 2.7194 -0.5770 -3.5492 16 6 2.8634 0.4890 -4.6371 17 8 3.3402 -0.1187 -5.8394 18 6 3.5098 0.7951 -6.9249 19 6 2.2137 0.8718 -7.7375 20 6 2.4295 1.7916 -8.9422 21 8 3.5152 1.2970 -9.7289 22 6 4.7635 1.2476 -9.0351 23 6 4.6414 0.3061 -7.8341 24 1 -0.3633 0.5651 -0.8584 25 1 -0.3633 -1.0259 -0.0603 26 1 -0.3633 0.4607 0.9185 27 1 2.9590 -0.1067 4.2491 28 1 3.6885 -1.0399 -3.3631 29 1 2.0106 -1.3372 -3.8774 30 1 1.8941 0.9517 -4.8231 31 1 3.5720 1.2495 -4.3091 32 1 3.7564 1.7827 -6.5349 33 1 1.9417 -0.1249 -8.0844 34 1 1.4151 1.2716 -7.1125 35 1 2.6618 2.7980 -8.5941 36 1 1.5236 1.8162 -9.5477 37 1 5.0263 2.2470 -8.6883 38 1 5.5389 0.8805 -9.7074 39 1 5.5791 0.3012 -7.2784 40 1 4.4184 -0.7022 -8.1830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753409035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:54 Heat of formation + Delta-G solvation = -197.214598 kcal Electronic energy + Delta-G solvation = -20954.954777 eV Core-core repulsion = 17541.524517 eV Total energy + Delta-G solvation = -3413.430260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.00768 -39.66234 -37.73022 -35.96719 -33.27661 -33.07084 -31.49561 -31.28838 -30.34331 -25.47850 -25.11882 -24.11749 -23.70397 -21.31536 -20.67896 -19.59656 -17.78510 -17.06717 -16.72749 -16.47729 -16.15249 -16.08376 -15.40824 -15.23253 -15.00929 -14.46260 -14.02996 -13.90995 -13.45286 -12.92311 -12.77323 -12.65940 -12.39873 -12.22037 -11.86601 -11.70827 -11.59196 -11.27924 -11.18258 -11.04150 -11.02073 -10.71078 -10.69135 -10.09133 -10.03763 -9.80512 -9.67614 -9.53571 -9.16165 -8.76992 -6.30565 -4.34908 2.80604 2.97492 3.19093 3.25924 3.31018 3.50105 3.90200 4.22918 4.39268 4.45289 4.59949 4.73474 4.83599 4.89732 4.99944 5.02069 5.05457 5.15885 5.26916 5.30716 5.36958 5.47890 5.64848 5.69226 5.74346 5.75858 5.84872 5.91162 6.11849 6.39351 6.46608 6.64019 6.79855 7.01513 7.09994 7.31912 7.48182 8.18789 8.57095 8.79712 9.28115 10.80806 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.039949 B = 0.003059 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.718851 B = 9150.255762 C = 9163.434738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.182 3.818 3 H 0.046 0.954 4 C -0.520 4.520 5 H 0.086 0.914 6 C 0.082 3.918 7 N -0.882 5.882 8 Si 0.870 3.130 9 H -0.271 1.271 10 H -0.261 1.261 11 H -0.281 1.281 12 O -0.345 6.345 13 C 0.457 3.543 14 O -0.531 6.531 15 C -0.116 4.116 16 C 0.075 3.925 17 O -0.380 6.380 18 C 0.090 3.910 19 C -0.180 4.180 20 C 0.063 3.937 21 O -0.383 6.383 22 C 0.064 3.936 23 C -0.154 4.154 24 H 0.029 0.971 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.271 0.729 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.097 0.903 37 H 0.052 0.948 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.536 4.134 -22.835 23.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.130 3.870 3 H 0.064 0.936 4 C -0.557 4.557 5 H 0.104 0.896 6 C -0.123 4.123 7 N -0.518 5.518 8 Si 0.696 3.304 9 H -0.196 1.196 10 H -0.185 1.185 11 H -0.207 1.207 12 O -0.260 6.260 13 C 0.300 3.700 14 O -0.422 6.422 15 C -0.154 4.154 16 C -0.002 4.002 17 O -0.299 6.299 18 C 0.032 3.968 19 C -0.218 4.218 20 C -0.013 4.013 21 O -0.302 6.302 22 C -0.013 4.013 23 C -0.192 4.192 24 H 0.048 0.952 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.115 0.885 37 H 0.070 0.930 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.530 4.235 -22.755 23.196 hybrid contribution -0.130 1.375 0.648 1.526 sum 1.400 5.610 -22.106 22.850 Atomic orbital electron populations 1.22263 0.97527 1.01172 1.00251 1.20982 0.91443 0.94058 0.80550 0.93589 1.20802 1.45564 0.96536 0.92843 0.89592 1.24906 0.93487 0.98611 0.95279 1.69853 1.43252 1.36334 1.02389 0.86953 0.79955 0.85683 0.77771 1.19604 1.18490 1.20662 1.86665 1.75368 1.43367 1.20637 1.23193 0.74642 0.85911 0.86243 1.90590 1.49573 1.17077 1.85010 1.21101 1.04956 0.99434 0.89891 1.22228 0.99478 0.94666 0.83780 1.87859 1.86800 1.35248 1.20011 1.22065 0.94528 0.93102 0.87090 1.22748 0.98878 1.02302 0.97884 1.22567 0.90441 0.95832 0.92499 1.87938 1.17447 1.86064 1.38748 1.22588 0.86512 0.98434 0.93787 1.22305 0.98909 1.01478 0.96464 0.95152 0.92476 0.91673 0.91941 0.87152 0.87339 0.92364 0.92233 0.91887 0.89948 0.90447 0.93022 0.88459 0.92982 0.88234 0.90005 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.50 37.16 0.35 -3.07 16 2 C 0.18 4.57 2.16 -27.88 -0.06 4.51 16 3 H 0.05 1.20 4.49 -51.93 -0.23 0.97 16 4 C -0.52 -14.77 9.25 -34.44 -0.32 -15.09 16 5 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 6 C 0.08 2.32 5.47 -17.82 -0.10 2.23 16 7 N -0.88 -26.19 13.96 55.43 0.77 -25.42 16 8 Si 0.87 21.33 26.69 -169.99 -4.54 16.80 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.26 -6.20 6.82 56.52 0.39 -5.82 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 O -0.34 -7.88 9.86 -39.27 -0.39 -8.27 16 13 C 0.46 8.96 7.93 36.01 0.29 9.24 16 14 O -0.53 -11.57 15.20 -18.75 -0.29 -11.85 16 15 C -0.12 -1.66 6.18 -27.88 -0.17 -1.83 16 16 C 0.07 0.98 5.04 37.16 0.19 1.17 16 17 O -0.38 -4.65 10.00 -35.23 -0.35 -5.00 16 18 C 0.09 0.89 2.70 -26.55 -0.07 0.82 16 19 C -0.18 -1.61 5.76 -26.59 -0.15 -1.76 16 20 C 0.06 0.50 6.84 37.21 0.25 0.75 16 21 O -0.38 -3.62 10.77 -35.23 -0.38 -4.00 16 22 C 0.06 0.47 6.84 37.21 0.25 0.73 16 23 C -0.15 -1.30 5.79 -26.59 -0.15 -1.45 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.06 1.43 7.82 -51.93 -0.41 1.02 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.06 0.76 7.95 -51.93 -0.41 0.34 16 31 H 0.06 0.80 8.04 -51.93 -0.42 0.38 16 32 H 0.06 0.59 7.79 -51.93 -0.40 0.19 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.67 7.99 -51.93 -0.42 0.26 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 330.99 15.07 4.99 4.99 Total: -1.00 -31.87 330.99 -6.39 -38.25 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -6.51 Total: -1.75 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 0.31 Total: -3.74 kcal Atomic # 7 Polarization: -26.19 SS G_CDS: 0.77 Total: -25.42 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -1.40 Total: -29.13 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.54 Total: 16.80 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.87 -6.39 -38.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753409035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.962 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds