Wall clock time and date at job start Mon Mar 30 2020 05:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47446 * 2 1 4 4 C 1.50699 * 109.47007 * 120.00094 * 2 1 3 5 5 H 1.08001 * 120.00016 * 85.93996 * 4 2 1 6 6 C 1.37873 * 120.00043 * 265.93984 * 4 2 1 7 7 N 1.31520 * 120.00097 * 177.91068 * 6 4 2 8 8 Si 1.86794 * 120.00130 * 357.90667 * 6 4 2 9 9 H 1.48497 * 109.47256 * 274.93750 * 8 6 4 10 10 H 1.48509 * 109.46882 * 34.93646 * 8 6 4 11 11 H 1.48503 * 109.47117 * 154.93176 * 8 6 4 12 12 O 1.45201 * 109.47061 * 239.99743 * 2 1 3 13 13 C 1.34234 * 116.99654 * 90.00561 * 12 2 1 14 14 O 1.20826 * 120.00074 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99979 * 179.97438 * 13 12 2 16 16 C 1.52996 * 109.46971 * 179.97438 * 15 13 12 17 17 O 1.42903 * 109.47076 * 179.97438 * 16 15 13 18 18 C 1.42906 * 114.00136 * 179.97438 * 17 16 15 19 19 C 1.53175 * 109.54345 * 269.55875 * 18 17 16 20 20 C 1.53095 * 109.16176 * 183.15099 * 19 18 17 21 21 O 1.42906 * 109.41280 * 57.60718 * 20 19 18 22 22 C 1.42898 * 114.10154 * 298.84671 * 21 20 19 23 23 C 1.53094 * 109.41707 * 61.15287 * 22 21 20 24 24 H 1.08999 * 109.46923 * 56.64323 * 1 2 3 25 25 H 1.09001 * 109.47004 * 176.63712 * 1 2 3 26 26 H 1.08991 * 109.47202 * 296.63782 * 1 2 3 27 27 H 0.96997 * 120.00292 * 179.97438 * 7 6 4 28 28 H 1.08993 * 109.46812 * 299.99482 * 15 13 12 29 29 H 1.08998 * 109.47026 * 59.99985 * 15 13 12 30 30 H 1.09001 * 109.47555 * 299.99667 * 16 15 13 31 31 H 1.08999 * 109.47351 * 60.00018 * 16 15 13 32 32 H 1.09001 * 109.53724 * 29.83028 * 18 17 16 33 33 H 1.08991 * 109.52479 * 303.05841 * 19 18 17 34 34 H 1.09004 * 109.52120 * 63.25096 * 19 18 17 35 35 H 1.09000 * 109.47736 * 297.62813 * 20 19 18 36 36 H 1.08993 * 109.48232 * 177.58968 * 20 19 18 37 37 H 1.09003 * 109.47606 * 301.17385 * 22 21 20 38 38 H 1.08993 * 109.49351 * 181.14598 * 22 21 20 39 39 H 1.09005 * 109.51887 * 182.48558 * 23 22 21 40 40 H 1.08994 * 109.51892 * 62.29856 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.1499 -1.7840 1.2240 6 6 2.3418 0.0101 2.3644 7 7 2.7409 -0.6136 3.4514 8 14 2.1944 1.8722 2.3571 9 1 3.4425 2.4655 1.8136 10 1 1.0444 2.2743 1.5077 11 1 1.9788 2.3572 3.7440 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9975 1.2517 -2.2506 15 6 2.7194 -0.5770 -3.5492 16 6 2.8634 0.4890 -4.6371 17 8 3.3402 -0.1187 -5.8394 18 6 3.5098 0.7951 -6.9249 19 6 2.2137 0.8718 -7.7375 20 6 2.4295 1.7916 -8.9422 21 8 3.5152 1.2970 -9.7289 22 6 4.7635 1.2476 -9.0351 23 6 4.6414 0.3061 -7.8341 24 1 -0.3633 0.5651 -0.8584 25 1 -0.3633 -1.0259 -0.0603 26 1 -0.3633 0.4607 0.9185 27 1 2.9590 -0.1067 4.2491 28 1 3.6885 -1.0399 -3.3631 29 1 2.0106 -1.3372 -3.8774 30 1 1.8941 0.9517 -4.8231 31 1 3.5720 1.2495 -4.3091 32 1 3.7564 1.7827 -6.5349 33 1 1.9417 -0.1249 -8.0844 34 1 1.4151 1.2716 -7.1125 35 1 2.6618 2.7980 -8.5941 36 1 1.5236 1.8162 -9.5477 37 1 5.0263 2.2470 -8.6883 38 1 5.5389 0.8805 -9.7074 39 1 5.5791 0.3012 -7.2784 40 1 4.4184 -0.7022 -8.1830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753409035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:53 Heat of formation + Delta-G solvation = -217.819221 kcal Electronic energy + Delta-G solvation = -20955.848260 eV Core-core repulsion = 17541.524517 eV Total energy + Delta-G solvation = -3414.323744 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.45254 -40.58220 -38.63998 -37.66882 -35.20705 -34.11668 -32.79909 -32.11432 -31.84139 -27.48136 -26.14560 -24.95888 -24.51020 -22.95031 -21.53322 -21.15640 -19.44861 -18.67236 -18.03994 -17.53413 -17.23714 -17.00203 -16.82212 -16.31210 -15.99920 -15.80294 -15.22918 -14.87522 -14.77274 -14.47064 -14.26342 -14.16713 -13.69857 -13.34796 -13.07973 -13.01876 -12.95088 -12.73353 -12.55487 -12.33799 -12.13210 -11.97704 -11.82888 -11.57345 -11.42179 -11.34831 -11.19222 -10.90364 -10.69064 -10.53341 -8.48283 -6.58808 1.22468 1.26146 1.28211 1.38841 1.69848 2.18702 2.67768 2.91331 2.97885 3.63951 3.72253 3.77892 3.94010 3.99472 4.01818 4.11931 4.20695 4.25752 4.31818 4.45134 4.53517 4.56542 4.62517 4.68260 4.71722 4.73757 4.76599 4.83552 4.87807 5.03578 5.11290 5.18678 5.29579 5.36732 5.64011 6.11274 6.14370 6.20972 6.50265 6.85849 7.09478 8.67174 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.039949 B = 0.003059 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.718851 B = 9150.255762 C = 9163.434738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.183 3.817 3 H 0.038 0.962 4 C -0.534 4.534 5 H 0.047 0.953 6 C 0.033 3.967 7 N -0.924 5.924 8 Si 0.930 3.070 9 H -0.269 1.269 10 H -0.248 1.248 11 H -0.267 1.267 12 O -0.359 6.359 13 C 0.454 3.546 14 O -0.552 6.552 15 C -0.105 4.105 16 C 0.082 3.918 17 O -0.388 6.388 18 C 0.080 3.920 19 C -0.177 4.177 20 C 0.063 3.937 21 O -0.402 6.402 22 C 0.062 3.938 23 C -0.150 4.150 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.276 0.724 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.063 0.937 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.361 5.544 -24.535 25.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.130 3.870 3 H 0.056 0.944 4 C -0.572 4.572 5 H 0.066 0.934 6 C -0.168 4.168 7 N -0.562 5.562 8 Si 0.753 3.247 9 H -0.194 1.194 10 H -0.171 1.171 11 H -0.192 1.192 12 O -0.275 6.275 13 C 0.300 3.700 14 O -0.444 6.444 15 C -0.143 4.143 16 C 0.006 3.994 17 O -0.308 6.308 18 C 0.023 3.977 19 C -0.215 4.215 20 C -0.014 4.014 21 O -0.321 6.321 22 C -0.014 4.014 23 C -0.188 4.188 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.142 0.858 29 H 0.148 0.852 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.127 0.873 37 H 0.081 0.919 38 H 0.133 0.867 39 H 0.106 0.894 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.352 5.638 -24.479 25.157 hybrid contribution -0.035 0.854 1.088 1.384 sum 1.317 6.492 -23.391 24.311 Atomic orbital electron populations 1.22169 0.95312 1.02048 1.01140 1.20788 0.93022 0.92936 0.80293 0.94438 1.20946 1.46129 0.95091 0.95002 0.93446 1.25688 0.92989 1.03420 0.94665 1.69962 1.44582 1.38425 1.03244 0.85999 0.80323 0.79720 0.78677 1.19406 1.17131 1.19165 1.86619 1.75995 1.43801 1.21128 1.24103 0.73720 0.85689 0.86537 1.90574 1.50439 1.18082 1.85274 1.21142 1.05852 0.99895 0.87387 1.22074 0.99506 0.93959 0.83903 1.87839 1.86816 1.36022 1.20111 1.22315 0.95596 0.93091 0.86696 1.22713 0.98422 1.02131 0.98229 1.22663 0.90704 0.95899 0.92135 1.87917 1.18291 1.86262 1.39610 1.22723 0.86259 0.98852 0.93580 1.22299 0.98627 1.01238 0.96656 0.93241 0.91819 0.91589 0.91416 0.85762 0.85195 0.92287 0.92675 0.91300 0.90877 0.90282 0.91987 0.87275 0.91855 0.86707 0.89355 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.39 9.50 71.98 0.68 -5.71 16 2 C 0.18 9.08 2.16 29.85 0.06 9.15 16 3 H 0.04 1.92 4.49 -2.39 -0.01 1.91 16 4 C -0.53 -30.89 9.25 25.60 0.24 -30.65 16 5 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 6 C 0.03 1.91 5.47 84.65 0.46 2.37 16 7 N -0.92 -55.83 13.96 21.45 0.30 -55.53 16 8 Si 0.93 43.53 26.69 68.60 1.83 45.36 16 9 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.25 -11.00 6.82 99.48 0.68 -10.32 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 12 O -0.36 -16.23 9.86 -51.45 -0.51 -16.74 16 13 C 0.45 17.18 7.93 71.24 0.56 17.75 16 14 O -0.55 -23.19 15.20 21.96 0.33 -22.86 16 15 C -0.11 -2.80 6.18 29.85 0.18 -2.61 16 16 C 0.08 1.99 5.04 71.98 0.36 2.36 16 17 O -0.39 -8.79 10.00 -148.98 -1.49 -10.28 16 18 C 0.08 1.45 2.70 30.71 0.08 1.54 16 19 C -0.18 -2.88 5.76 30.68 0.18 -2.70 16 20 C 0.06 0.87 6.84 72.01 0.49 1.36 16 21 O -0.40 -6.86 10.77 -148.98 -1.60 -8.46 16 22 C 0.06 0.80 6.84 72.01 0.49 1.29 16 23 C -0.15 -2.29 5.79 30.68 0.18 -2.11 16 24 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 26 H 0.07 2.78 7.82 -2.39 -0.02 2.76 16 27 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 28 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 29 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 30 H 0.06 1.42 7.95 -2.39 -0.02 1.40 16 31 H 0.05 1.38 8.04 -2.39 -0.02 1.36 16 32 H 0.07 1.16 7.79 -2.39 -0.02 1.15 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.24 7.99 -2.38 -0.02 1.22 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 38 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -68.29 330.99 3.83 -64.46 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.98 Total: 12.01 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 3.98 Total: -7.97 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.30 Total: -55.53 kcal Atomic # 8 Polarization: -55.07 SS G_CDS: -3.27 Total: -58.34 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.83 Total: 45.36 kcal Total: -68.29 3.83 -64.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753409035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.355 kcal (2) G-P(sol) polarization free energy of solvation -68.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds