Wall clock time and date at job start Mon Mar 30 2020 05:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47142 * 2 1 4 4 C 1.50699 * 109.46969 * 119.99256 * 2 1 3 5 5 H 1.08002 * 120.00000 * 120.00667 * 4 2 1 6 6 C 1.37884 * 120.00427 * 300.00301 * 4 2 1 7 7 N 1.31516 * 119.99463 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00116 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47160 * 90.00402 * 8 6 4 10 10 H 1.48504 * 109.47041 * 210.00237 * 8 6 4 11 11 H 1.48498 * 109.47250 * 329.99946 * 8 6 4 12 12 N 1.46499 * 109.47458 * 239.99524 * 2 1 3 13 13 N 1.40105 * 119.99713 * 90.27596 * 12 2 1 14 14 C 1.30053 * 119.99317 * 179.72014 * 13 12 2 15 15 C 1.46704 * 119.99393 * 179.97438 * 14 13 12 16 16 N 1.31444 * 125.16802 * 359.69935 * 15 14 13 17 17 C 1.35466 * 109.62944 * 179.88863 * 16 15 14 18 18 C 1.39914 * 133.31950 * 180.15681 * 17 16 15 19 19 C 1.36593 * 119.89123 * 180.29318 * 18 17 16 20 20 C 1.38767 * 120.67536 * 359.96115 * 19 18 17 21 21 C 1.37936 * 120.46595 * 359.97438 * 20 19 18 22 22 C 1.38768 * 119.72172 * 0.02562 * 21 20 19 23 23 N 1.37189 * 125.16668 * 180.02562 * 15 14 13 24 24 C 1.46502 * 126.42055 * 359.94087 * 23 15 14 25 25 H 1.09003 * 109.46606 * 60.00756 * 1 2 3 26 26 H 1.08998 * 109.46704 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47205 * 300.00580 * 1 2 3 28 28 H 0.96998 * 119.99568 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99790 * 269.99499 * 12 2 1 30 30 H 1.07991 * 120.00757 * 0.02562 * 14 13 12 31 31 H 1.07997 * 120.05191 * 0.25435 * 18 17 16 32 32 H 1.07999 * 119.66574 * 179.97438 * 19 18 17 33 33 H 1.08004 * 119.76412 * 180.02562 * 20 19 18 34 34 H 1.08003 * 120.13547 * 180.02562 * 21 20 19 35 35 H 1.08997 * 109.47043 * 90.02399 * 24 23 15 36 36 H 1.09005 * 109.46764 * 210.03008 * 24 23 15 37 37 H 1.09002 * 109.46674 * 330.02407 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5883 1.1316 6 6 1.6992 -0.2391 2.4829 7 7 0.9426 0.8299 2.6033 8 14 2.3212 -1.1200 4.0081 9 1 3.6295 -0.5455 4.4126 10 1 1.3429 -0.9489 5.1122 11 1 2.4857 -2.5659 3.7123 12 7 2.0184 -0.6907 -1.1961 13 7 2.2575 0.0308 -2.3730 14 6 2.6962 -0.5815 -3.4332 15 6 2.9460 0.1738 -4.6658 16 7 2.7566 1.4662 -4.8133 17 6 3.0886 1.8338 -6.0741 18 6 3.0818 3.0588 -6.7501 19 6 3.4772 3.1177 -8.0562 20 6 3.8881 1.9728 -8.7239 21 6 3.9045 0.7542 -8.0777 22 6 3.5065 0.6738 -6.7507 23 7 3.4067 -0.3624 -5.8415 24 6 3.7333 -1.7693 -6.0867 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.7080 1.1611 3.4843 29 1 2.1802 -1.6468 -1.1719 30 1 2.8759 -1.6460 -3.4065 31 1 2.7639 3.9561 -6.2401 32 1 3.4701 4.0652 -8.5746 33 1 4.1982 2.0364 -9.7565 34 1 4.2257 -0.1335 -8.6023 35 1 2.8470 -2.2904 -6.4485 36 1 4.5235 -1.8337 -6.8348 37 1 4.0727 -2.2305 -5.1592 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755800805.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:40 Heat of formation + Delta-G solvation = 118.471348 kcal Electronic energy + Delta-G solvation = -19397.952702 eV Core-core repulsion = 16370.106033 eV Total energy + Delta-G solvation = -3027.846668 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.86670 -37.44169 -36.47146 -34.22404 -33.94454 -31.55548 -30.49071 -29.38623 -27.37101 -26.95667 -25.30339 -23.92010 -22.03544 -21.35296 -20.41197 -19.53828 -17.45082 -17.03723 -16.83382 -15.78639 -15.59911 -15.51465 -14.91905 -14.13235 -14.05225 -13.85244 -13.37625 -13.23868 -12.81915 -12.66005 -12.52123 -11.98135 -11.80598 -11.42551 -11.38319 -11.07634 -10.89592 -10.60742 -10.32115 -10.28387 -10.23173 -9.74390 -9.66559 -9.09715 -8.59415 -8.36905 -8.07720 -7.00088 -6.17981 -4.27211 0.86939 1.55143 2.26764 2.48596 3.22062 3.28357 3.30098 3.47336 3.63060 4.01435 4.29895 4.33145 4.59559 4.65996 4.97121 4.99809 5.05399 5.14735 5.25078 5.39831 5.46634 5.56787 5.66991 5.85169 6.12461 6.30482 6.51356 6.57851 6.62170 6.81044 6.95091 6.97011 7.08629 7.18031 7.51312 7.69717 7.76904 8.02071 8.12585 8.19774 8.78033 9.10415 9.39479 10.88015 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.036024 B = 0.003205 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.067130 B = 8734.724792 C = 9168.893846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.293 3.707 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.604 5.604 13 N -0.131 5.131 14 C -0.018 4.018 15 C 0.365 3.635 16 N -0.471 5.471 17 C 0.054 3.946 18 C -0.065 4.065 19 C -0.133 4.133 20 C -0.112 4.112 21 C -0.110 4.110 22 C 0.044 3.956 23 N -0.495 5.495 24 C 0.081 3.919 25 H 0.015 0.985 26 H 0.027 0.973 27 H 0.092 0.908 28 H 0.266 0.734 29 H 0.371 0.629 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.409 -3.289 -19.962 20.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.192 3.808 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.342 5.342 13 N 0.050 4.950 14 C -0.226 4.226 15 C 0.103 3.897 16 N -0.193 5.193 17 C -0.067 4.067 18 C -0.085 4.085 19 C -0.153 4.153 20 C -0.132 4.132 21 C -0.131 4.131 22 C -0.066 4.066 23 N -0.187 5.187 24 C -0.061 4.061 25 H 0.034 0.966 26 H 0.046 0.954 27 H 0.111 0.889 28 H 0.076 0.924 29 H 0.207 0.793 30 H 0.134 0.866 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.709 -1.794 -18.674 19.342 hybrid contribution 0.876 -2.400 0.052 2.556 sum 5.585 -4.194 -18.622 19.888 Atomic orbital electron populations 1.22204 0.98562 0.99334 1.00924 1.18699 0.90467 0.93900 0.77760 0.93455 1.21194 1.32622 1.13458 0.90069 0.92097 1.24861 0.94739 0.94987 0.98978 1.69891 1.35668 1.22421 1.24077 0.86399 0.78644 0.79778 0.81993 1.20478 1.20970 1.19882 1.49378 1.70044 1.08033 1.06745 1.74223 1.00217 1.27163 0.93414 1.21844 1.14864 0.95659 0.90233 1.20895 0.95098 0.88089 0.85664 1.71013 1.22922 1.09097 1.16235 1.19226 1.02818 0.93590 0.91025 1.20086 0.99318 0.95260 0.93837 1.20576 1.01853 0.98561 0.94329 1.20800 1.01076 0.91760 0.99571 1.19867 1.03921 0.98545 0.90797 1.18861 1.06156 0.88626 0.92932 1.45217 1.55706 1.07853 1.09918 1.21942 1.01907 0.78542 1.03698 0.96550 0.95416 0.88917 0.92425 0.79268 0.86593 0.85377 0.85671 0.85691 0.86454 0.90831 0.89972 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.29 37.16 0.35 -3.35 16 2 C 0.29 7.41 3.23 -69.08 -0.22 7.19 16 3 H 0.05 1.35 8.14 -51.93 -0.42 0.92 16 4 C -0.53 -14.09 8.74 -34.44 -0.30 -14.39 16 5 H 0.06 1.55 7.79 -52.49 -0.41 1.14 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.45 11.32 55.43 0.63 -23.82 16 8 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 N -0.60 -13.09 6.10 -5.88 -0.04 -13.12 16 13 N -0.13 -2.76 11.43 32.02 0.37 -2.40 16 14 C -0.02 -0.32 10.55 -14.89 -0.16 -0.47 16 15 C 0.37 6.30 7.72 -154.49 -1.19 5.11 16 16 N -0.47 -9.19 11.23 -8.91 -0.10 -9.29 16 17 C 0.05 0.89 7.21 -84.73 -0.61 0.28 16 18 C -0.07 -0.90 10.05 -39.55 -0.40 -1.29 16 19 C -0.13 -1.42 9.96 -39.98 -0.40 -1.82 16 20 C -0.11 -1.11 10.03 -39.50 -0.40 -1.51 16 21 C -0.11 -1.22 10.05 -39.50 -0.40 -1.62 16 22 C 0.04 0.62 6.87 -83.88 -0.58 0.05 16 23 N -0.49 -6.79 3.24 -119.26 -0.39 -7.17 16 24 C 0.08 0.69 10.95 59.85 0.66 1.34 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.37 7.14 8.58 -182.59 -1.57 5.58 16 30 H 0.12 1.57 7.38 -52.49 -0.39 1.19 16 31 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 34 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.64 7.35 -51.93 -0.38 0.26 16 LS Contribution 322.57 15.07 4.86 4.86 Total: -1.00 -31.44 322.57 -9.43 -40.87 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.00 Total: 3.37 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -3.74 Total: -8.77 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.47 Total: -55.80 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.44 -9.43 -40.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755800805.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.344 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds