Wall clock time and date at job start Mon Mar 30 2020 05:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47142 * 2 1 4 4 C 1.50699 * 109.46969 * 119.99256 * 2 1 3 5 5 H 1.08002 * 120.00000 * 120.00667 * 4 2 1 6 6 C 1.37884 * 120.00427 * 300.00301 * 4 2 1 7 7 N 1.31516 * 119.99463 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00116 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47160 * 90.00402 * 8 6 4 10 10 H 1.48504 * 109.47041 * 210.00237 * 8 6 4 11 11 H 1.48498 * 109.47250 * 329.99946 * 8 6 4 12 12 N 1.46499 * 109.47458 * 239.99524 * 2 1 3 13 13 N 1.40105 * 119.99713 * 90.27596 * 12 2 1 14 14 C 1.30053 * 119.99317 * 179.72014 * 13 12 2 15 15 C 1.46704 * 119.99393 * 179.97438 * 14 13 12 16 16 N 1.31444 * 125.16802 * 359.69935 * 15 14 13 17 17 C 1.35466 * 109.62944 * 179.88863 * 16 15 14 18 18 C 1.39914 * 133.31950 * 180.15681 * 17 16 15 19 19 C 1.36593 * 119.89123 * 180.29318 * 18 17 16 20 20 C 1.38767 * 120.67536 * 359.96115 * 19 18 17 21 21 C 1.37936 * 120.46595 * 359.97438 * 20 19 18 22 22 C 1.38768 * 119.72172 * 0.02562 * 21 20 19 23 23 N 1.37189 * 125.16668 * 180.02562 * 15 14 13 24 24 C 1.46502 * 126.42055 * 359.94087 * 23 15 14 25 25 H 1.09003 * 109.46606 * 60.00756 * 1 2 3 26 26 H 1.08998 * 109.46704 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47205 * 300.00580 * 1 2 3 28 28 H 0.96998 * 119.99568 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99790 * 269.99499 * 12 2 1 30 30 H 1.07991 * 120.00757 * 0.02562 * 14 13 12 31 31 H 1.07997 * 120.05191 * 0.25435 * 18 17 16 32 32 H 1.07999 * 119.66574 * 179.97438 * 19 18 17 33 33 H 1.08004 * 119.76412 * 180.02562 * 20 19 18 34 34 H 1.08003 * 120.13547 * 180.02562 * 21 20 19 35 35 H 1.08997 * 109.47043 * 90.02399 * 24 23 15 36 36 H 1.09005 * 109.46764 * 210.03008 * 24 23 15 37 37 H 1.09002 * 109.46674 * 330.02407 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5883 1.1316 6 6 1.6992 -0.2391 2.4829 7 7 0.9426 0.8299 2.6033 8 14 2.3212 -1.1200 4.0081 9 1 3.6295 -0.5455 4.4126 10 1 1.3429 -0.9489 5.1122 11 1 2.4857 -2.5659 3.7123 12 7 2.0184 -0.6907 -1.1961 13 7 2.2575 0.0308 -2.3730 14 6 2.6962 -0.5815 -3.4332 15 6 2.9460 0.1738 -4.6658 16 7 2.7566 1.4662 -4.8133 17 6 3.0886 1.8338 -6.0741 18 6 3.0818 3.0588 -6.7501 19 6 3.4772 3.1177 -8.0562 20 6 3.8881 1.9728 -8.7239 21 6 3.9045 0.7542 -8.0777 22 6 3.5065 0.6738 -6.7507 23 7 3.4067 -0.3624 -5.8415 24 6 3.7333 -1.7693 -6.0867 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.7080 1.1611 3.4843 29 1 2.1802 -1.6468 -1.1719 30 1 2.8759 -1.6460 -3.4065 31 1 2.7639 3.9561 -6.2401 32 1 3.4701 4.0652 -8.5746 33 1 4.1982 2.0364 -9.7565 34 1 4.2257 -0.1335 -8.6023 35 1 2.8470 -2.2904 -6.4485 36 1 4.5235 -1.8337 -6.8348 37 1 4.0727 -2.2305 -5.1592 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755800805.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:39 Heat of formation + Delta-G solvation = 98.606054 kcal Electronic energy + Delta-G solvation = -19398.814126 eV Core-core repulsion = 16370.106033 eV Total energy + Delta-G solvation = -3028.708092 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.94256 -38.55180 -37.93984 -35.89131 -35.11849 -33.34653 -31.41857 -30.70993 -28.85985 -27.79868 -27.32394 -25.26774 -23.05056 -22.54559 -22.14641 -20.79276 -18.84927 -18.40044 -17.89733 -17.16234 -17.03631 -16.79629 -16.38106 -15.48915 -14.99822 -14.93392 -14.62794 -14.53031 -14.30825 -14.10425 -13.49425 -13.45219 -12.94149 -12.88067 -12.80139 -12.70367 -12.33859 -12.32135 -12.15815 -12.03955 -11.31032 -11.24608 -11.01441 -10.83671 -10.59517 -9.59307 -9.06359 -8.50625 -8.18597 -6.36437 -0.21727 0.60598 1.03922 1.37886 1.44532 1.45783 1.55723 2.19573 2.27098 2.46125 2.98251 3.10923 3.20102 3.60420 3.88075 4.14823 4.19167 4.31301 4.43278 4.50677 4.54682 4.63442 4.71275 4.74031 4.91398 4.95949 5.05992 5.10657 5.23449 5.47288 5.54255 5.62356 5.64959 5.70979 5.82427 6.02945 6.09902 6.16588 6.32575 6.79150 6.94806 7.34664 7.62048 8.87002 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.036024 B = 0.003205 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.067130 B = 8734.724792 C = 9168.893846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.305 3.695 3 H 0.000 1.000 4 C -0.548 4.548 5 H 0.068 0.932 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.974 3.026 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.262 1.262 12 N -0.619 5.619 13 N -0.195 5.195 14 C 0.030 3.970 15 C 0.329 3.671 16 N -0.520 5.520 17 C 0.004 3.996 18 C -0.092 4.092 19 C -0.122 4.122 20 C -0.098 4.098 21 C -0.110 4.110 22 C 0.037 3.963 23 N -0.482 5.482 24 C 0.069 3.931 25 H 0.014 0.986 26 H 0.036 0.964 27 H 0.070 0.930 28 H 0.267 0.733 29 H 0.381 0.619 30 H 0.157 0.843 31 H 0.122 0.878 32 H 0.158 0.842 33 H 0.169 0.831 34 H 0.154 0.846 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.033 -5.203 -23.076 24.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.201 3.799 3 H 0.018 0.982 4 C -0.587 4.587 5 H 0.086 0.914 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.798 3.202 9 H -0.204 1.204 10 H -0.206 1.206 11 H -0.186 1.186 12 N -0.358 5.358 13 N -0.010 5.010 14 C -0.181 4.181 15 C 0.065 3.935 16 N -0.243 5.243 17 C -0.116 4.116 18 C -0.112 4.112 19 C -0.142 4.142 20 C -0.117 4.117 21 C -0.131 4.131 22 C -0.073 4.073 23 N -0.174 5.174 24 C -0.071 4.071 25 H 0.033 0.967 26 H 0.056 0.944 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.219 0.781 30 H 0.173 0.827 31 H 0.140 0.860 32 H 0.175 0.825 33 H 0.186 0.814 34 H 0.171 0.829 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.342 -3.743 -21.808 23.018 hybrid contribution 0.479 -1.704 0.587 1.865 sum 6.821 -5.447 -21.221 22.946 Atomic orbital electron populations 1.22022 0.98485 0.99434 0.99689 1.18228 0.90504 0.91739 0.79415 0.98219 1.21505 1.32710 1.13688 0.90773 0.91429 1.25758 0.94815 0.95632 1.02085 1.70033 1.36740 1.23810 1.24780 0.85322 0.77848 0.79033 0.77985 1.20353 1.20617 1.18637 1.48684 1.72726 1.08017 1.06388 1.74225 1.04055 1.28421 0.94306 1.22407 1.09393 0.97334 0.88932 1.20833 0.97589 0.88100 0.86942 1.70850 1.23806 1.10994 1.18612 1.19694 1.05224 0.95820 0.90818 1.20330 1.00970 0.94476 0.95415 1.21013 0.99613 1.00627 0.92929 1.21385 0.98455 0.90678 1.01211 1.20360 1.02858 1.00533 0.89313 1.19275 1.06097 0.87853 0.94086 1.45393 1.54017 1.09563 1.08377 1.22397 1.03694 0.75697 1.05359 0.96651 0.94447 0.91110 0.92358 0.78090 0.82655 0.86033 0.82482 0.81389 0.82866 0.89085 0.87261 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.02 9.29 71.98 0.67 -6.35 16 2 C 0.30 16.20 3.23 44.25 0.14 16.34 16 3 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 4 C -0.55 -29.63 8.74 25.60 0.22 -29.41 16 5 H 0.07 3.47 7.79 -2.91 -0.02 3.45 16 6 C 0.02 0.95 5.30 84.66 0.45 1.40 16 7 N -0.92 -52.45 11.32 21.45 0.24 -52.21 16 8 Si 0.97 42.33 29.54 68.60 2.03 44.36 16 9 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 12 N -0.62 -27.83 6.10 -172.52 -1.05 -28.89 16 13 N -0.19 -8.57 11.43 -52.61 -0.60 -9.17 16 14 C 0.03 1.02 10.55 87.17 0.92 1.94 16 15 C 0.33 11.43 7.72 135.95 1.05 12.48 16 16 N -0.52 -21.20 11.23 -182.11 -2.04 -23.25 16 17 C 0.00 0.14 7.21 39.58 0.29 0.43 16 18 C -0.09 -2.53 10.05 22.29 0.22 -2.31 16 19 C -0.12 -2.26 9.96 22.01 0.22 -2.04 16 20 C -0.10 -1.47 10.03 22.32 0.22 -1.25 16 21 C -0.11 -1.98 10.05 22.32 0.22 -1.75 16 22 C 0.04 0.99 6.87 38.85 0.27 1.26 16 23 N -0.48 -12.40 3.24 -531.22 -1.72 -14.12 16 24 C 0.07 0.92 10.95 127.77 1.40 2.31 16 25 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.07 3.92 6.07 -2.39 -0.01 3.90 16 28 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 29 H 0.38 14.89 8.58 -213.32 -1.83 13.06 16 30 H 0.16 3.91 7.38 -2.91 -0.02 3.89 16 31 H 0.12 3.29 8.06 -2.91 -0.02 3.26 16 32 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 33 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 34 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.10 1.11 7.35 -2.39 -0.02 1.10 16 Total: -1.00 -74.09 322.57 2.40 -71.69 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -0.75 Total: 18.54 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 6.30 Total: -6.95 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -5.18 Total: -127.64 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -74.09 2.40 -71.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755800805.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.295 kcal (2) G-P(sol) polarization free energy of solvation -74.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds