Wall clock time and date at job start Mon Mar 30 2020 04:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00197 * 2 1 4 4 H 1.48497 * 109.47064 * 270.00385 * 3 2 1 5 5 H 1.48501 * 109.46641 * 30.00201 * 3 2 1 6 6 H 1.48499 * 109.47163 * 150.00301 * 3 2 1 7 7 C 1.37884 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00226 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99731 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46991 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47342 * 180.02562 * 10 9 7 12 12 O 1.45203 * 109.47357 * 180.02562 * 11 10 9 13 13 C 1.34222 * 117.00257 * 179.97438 * 12 11 10 14 14 O 1.20828 * 119.99679 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00096 * 180.02562 * 13 12 11 16 16 H 1.09005 * 109.46955 * 304.99759 * 15 13 12 17 17 O 1.42905 * 109.46879 * 185.00385 * 15 13 12 18 18 C 1.52997 * 109.47288 * 65.00428 * 15 13 12 19 19 C 1.53175 * 109.54337 * 180.02562 * 18 15 13 20 20 C 1.53092 * 109.16344 * 176.84735 * 19 18 15 21 21 O 1.42905 * 109.41215 * 302.38824 * 20 19 18 22 22 C 1.42905 * 114.09831 * 61.16158 * 21 20 19 23 23 C 1.53098 * 109.41155 * 298.83847 * 22 21 20 24 24 H 0.97002 * 119.99927 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47362 * 60.00020 * 9 7 2 26 26 H 1.09002 * 109.47497 * 299.99716 * 9 7 2 27 27 H 1.09002 * 109.46900 * 59.99922 * 10 9 7 28 28 H 1.08999 * 109.47524 * 300.00669 * 10 9 7 29 29 H 1.09002 * 109.47218 * 60.00078 * 11 10 9 30 30 H 1.09002 * 109.47290 * 299.99990 * 11 10 9 31 31 H 0.96689 * 114.00002 * 299.99513 * 17 15 13 32 32 H 1.08996 * 109.54194 * 59.82292 * 18 15 13 33 33 H 1.09004 * 109.52714 * 56.93754 * 19 18 15 34 34 H 1.09001 * 109.57654 * 296.78485 * 19 18 15 35 35 H 1.08997 * 109.48111 * 182.40965 * 20 19 18 36 36 H 1.09000 * 109.48212 * 62.37239 * 20 19 18 37 37 H 1.09000 * 109.47932 * 58.81878 * 22 21 20 38 38 H 1.08993 * 109.48024 * 178.86013 * 22 21 20 39 39 H 1.08996 * 109.52270 * 297.70307 * 23 22 21 40 40 H 1.08995 * 109.57012 * 177.54155 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6366 -0.0009 12 8 6.0356 -4.0055 -0.0014 13 6 7.3662 -4.1814 -0.0020 14 8 8.1022 -3.2232 -0.0016 15 6 7.9422 -5.5740 -0.0031 16 1 7.5366 -6.1356 0.8385 17 8 9.3646 -5.5012 0.1140 18 6 7.5735 -6.2774 -1.3108 19 6 8.1576 -7.6934 -1.3134 20 6 7.7180 -8.4161 -2.5893 21 8 6.2906 -8.4358 -2.6562 22 6 5.6908 -7.1396 -2.7043 23 6 6.0491 -6.3656 -1.4329 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6801 -0.8911 27 1 3.6578 -3.1505 -0.8907 28 1 3.6585 -3.1503 0.8892 29 1 5.9149 -2.1227 0.8890 30 1 5.9149 -2.1228 -0.8910 31 1 9.7938 -5.0144 -0.6027 32 1 7.9759 -5.7150 -2.1533 33 1 7.7946 -8.2389 -0.4423 34 1 9.2459 -7.6396 -1.2818 35 1 8.0953 -9.4385 -2.5764 36 1 8.1154 -7.8927 -3.4589 37 1 6.0618 -6.5995 -3.5754 38 1 4.6080 -7.2425 -2.7742 39 1 5.6434 -6.8842 -0.5643 40 1 5.6293 -5.3612 -1.4865 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767357596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:37 Heat of formation + Delta-G solvation = -207.519525 kcal Electronic energy + Delta-G solvation = -21411.007724 eV Core-core repulsion = 17997.130608 eV Total energy + Delta-G solvation = -3413.877115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.94784 -39.45500 -37.60303 -36.33134 -34.28604 -33.85094 -31.91184 -31.36190 -28.84577 -27.35878 -24.46688 -23.70134 -22.96701 -21.08622 -20.64055 -20.29899 -18.12961 -17.55785 -16.97947 -16.74687 -16.23825 -16.10992 -15.82236 -15.20840 -14.73608 -14.31454 -14.27324 -13.83967 -13.65647 -13.32375 -12.78651 -12.67235 -12.55554 -12.30658 -12.01589 -11.81072 -11.59272 -11.20784 -11.13807 -11.07727 -10.87785 -10.64437 -10.48497 -10.38770 -10.03777 -9.88597 -9.78575 -9.64578 -9.29663 -8.60779 -6.10915 -4.10270 2.03778 2.58840 3.26377 3.34442 3.37386 3.63862 3.76727 4.14742 4.34711 4.39183 4.47946 4.63622 4.76626 4.89752 4.95751 5.06478 5.22101 5.23757 5.31409 5.36090 5.38581 5.44251 5.46355 5.58672 5.76849 5.76930 5.91091 6.03776 6.23946 6.31267 6.56011 6.72001 6.94890 7.03159 7.14871 7.26413 7.64771 7.72103 8.45251 8.93122 9.50475 11.02188 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.024808 B = 0.003751 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.382818 B = 7463.811460 C = 8363.242086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.062 3.938 12 O -0.348 6.348 13 C 0.429 3.571 14 O -0.506 6.506 15 C 0.125 3.875 16 H 0.137 0.863 17 O -0.531 6.531 18 C -0.115 4.115 19 C -0.144 4.144 20 C 0.060 3.940 21 O -0.384 6.384 22 C 0.062 3.938 23 C -0.160 4.160 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.014 0.986 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.384 0.616 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.681 -15.491 -4.317 23.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.138 4.138 11 C -0.011 4.011 12 O -0.265 6.265 13 C 0.271 3.729 14 O -0.394 6.394 15 C 0.064 3.936 16 H 0.155 0.845 17 O -0.337 6.337 18 C -0.134 4.134 19 C -0.181 4.181 20 C -0.016 4.016 21 O -0.303 6.303 22 C -0.015 4.015 23 C -0.198 4.198 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.032 0.968 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.233 0.767 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 17.487 -15.559 -3.780 23.710 hybrid contribution 0.646 1.854 -0.429 2.009 sum 18.133 -13.705 -4.210 23.116 Atomic orbital electron populations 1.69904 1.06279 1.27018 1.50705 1.25015 0.94753 0.99169 0.94427 0.86791 0.80373 0.83621 0.78594 1.20203 1.21233 1.19021 1.21040 0.88983 0.94676 1.51357 0.90772 1.19521 0.97588 0.91046 0.96653 1.21562 0.88551 1.00854 1.02849 1.23553 0.97218 0.78198 1.02136 1.86564 1.23056 1.34205 1.82627 1.24676 0.81986 0.93340 0.72935 1.90676 1.60755 1.42897 1.45095 1.21628 0.82076 0.89074 1.00821 0.84513 1.86636 1.16149 1.77545 1.53338 1.21823 0.97878 0.97173 0.96514 1.22166 1.01629 0.94501 0.99824 1.22570 0.81683 1.01240 0.96147 1.87951 1.19308 1.28354 1.94645 1.22609 0.98970 0.83661 0.96211 1.22406 0.93898 1.03468 0.99982 0.92603 0.96309 0.96769 0.91519 0.91433 0.91477 0.91556 0.76677 0.90290 0.90444 0.90078 0.88744 0.93302 0.93235 0.88203 0.90076 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -14.60 9.66 -34.44 -0.33 -14.94 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.10 -1.90 5.53 -26.73 -0.15 -2.05 16 11 C 0.06 1.02 5.47 37.16 0.20 1.22 16 12 O -0.35 -5.00 7.52 -39.24 -0.30 -5.30 16 13 C 0.43 5.76 7.14 36.00 0.26 6.01 16 14 O -0.51 -8.27 16.07 -25.46 -0.41 -8.68 16 15 C 0.12 1.22 3.09 -27.89 -0.09 1.13 16 16 H 0.14 1.21 8.14 -51.93 -0.42 0.79 16 17 O -0.53 -5.18 12.39 -55.14 -0.68 -5.86 16 18 C -0.11 -0.96 2.03 -90.44 -0.18 -1.14 16 19 C -0.14 -1.03 5.23 -26.59 -0.14 -1.16 16 20 C 0.06 0.45 6.84 37.20 0.25 0.71 16 21 O -0.38 -3.90 10.77 -35.23 -0.38 -4.28 16 22 C 0.06 0.57 6.84 37.21 0.25 0.83 16 23 C -0.16 -1.51 4.79 -26.59 -0.13 -1.64 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 26 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 30 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 31 H 0.38 2.83 8.79 45.56 0.40 3.23 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.51 7.79 -51.93 -0.40 0.10 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.10 1.06 5.78 -51.93 -0.30 0.76 16 LS Contribution 326.20 15.07 4.92 4.92 Total: -1.00 -32.39 326.20 -6.73 -39.12 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.73 Total: -0.51 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -0.26 Total: -9.52 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.77 Total: -26.66 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -1.77 Total: -24.12 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.39 -6.73 -39.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767357596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.396 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds