Wall clock time and date at job start Mon Mar 30 2020 04:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00197 * 2 1 4 4 H 1.48497 * 109.47064 * 270.00385 * 3 2 1 5 5 H 1.48501 * 109.46641 * 30.00201 * 3 2 1 6 6 H 1.48499 * 109.47163 * 150.00301 * 3 2 1 7 7 C 1.37884 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00226 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99731 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46991 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47342 * 180.02562 * 10 9 7 12 12 O 1.45203 * 109.47357 * 180.02562 * 11 10 9 13 13 C 1.34222 * 117.00257 * 179.97438 * 12 11 10 14 14 O 1.20828 * 119.99679 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00096 * 180.02562 * 13 12 11 16 16 H 1.09005 * 109.46955 * 304.99759 * 15 13 12 17 17 O 1.42905 * 109.46879 * 185.00385 * 15 13 12 18 18 C 1.52997 * 109.47288 * 65.00428 * 15 13 12 19 19 C 1.53175 * 109.54337 * 180.02562 * 18 15 13 20 20 C 1.53092 * 109.16344 * 176.84735 * 19 18 15 21 21 O 1.42905 * 109.41215 * 302.38824 * 20 19 18 22 22 C 1.42905 * 114.09831 * 61.16158 * 21 20 19 23 23 C 1.53098 * 109.41155 * 298.83847 * 22 21 20 24 24 H 0.97002 * 119.99927 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47362 * 60.00020 * 9 7 2 26 26 H 1.09002 * 109.47497 * 299.99716 * 9 7 2 27 27 H 1.09002 * 109.46900 * 59.99922 * 10 9 7 28 28 H 1.08999 * 109.47524 * 300.00669 * 10 9 7 29 29 H 1.09002 * 109.47218 * 60.00078 * 11 10 9 30 30 H 1.09002 * 109.47290 * 299.99990 * 11 10 9 31 31 H 0.96689 * 114.00002 * 299.99513 * 17 15 13 32 32 H 1.08996 * 109.54194 * 59.82292 * 18 15 13 33 33 H 1.09004 * 109.52714 * 56.93754 * 19 18 15 34 34 H 1.09001 * 109.57654 * 296.78485 * 19 18 15 35 35 H 1.08997 * 109.48111 * 182.40965 * 20 19 18 36 36 H 1.09000 * 109.48212 * 62.37239 * 20 19 18 37 37 H 1.09000 * 109.47932 * 58.81878 * 22 21 20 38 38 H 1.08993 * 109.48024 * 178.86013 * 22 21 20 39 39 H 1.08996 * 109.52270 * 297.70307 * 23 22 21 40 40 H 1.08995 * 109.57012 * 177.54155 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6366 -0.0009 12 8 6.0356 -4.0055 -0.0014 13 6 7.3662 -4.1814 -0.0020 14 8 8.1022 -3.2232 -0.0016 15 6 7.9422 -5.5740 -0.0031 16 1 7.5366 -6.1356 0.8385 17 8 9.3646 -5.5012 0.1140 18 6 7.5735 -6.2774 -1.3108 19 6 8.1576 -7.6934 -1.3134 20 6 7.7180 -8.4161 -2.5893 21 8 6.2906 -8.4358 -2.6562 22 6 5.6908 -7.1396 -2.7043 23 6 6.0491 -6.3656 -1.4329 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6801 -0.8911 27 1 3.6578 -3.1505 -0.8907 28 1 3.6585 -3.1503 0.8892 29 1 5.9149 -2.1227 0.8890 30 1 5.9149 -2.1228 -0.8910 31 1 9.7938 -5.0144 -0.6027 32 1 7.9759 -5.7150 -2.1533 33 1 7.7946 -8.2389 -0.4423 34 1 9.2459 -7.6396 -1.2818 35 1 8.0953 -9.4385 -2.5764 36 1 8.1154 -7.8927 -3.4589 37 1 6.0618 -6.5995 -3.5754 38 1 4.6080 -7.2425 -2.7742 39 1 5.6434 -6.8842 -0.5643 40 1 5.6293 -5.3612 -1.4865 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767357596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:37 Heat of formation + Delta-G solvation = -229.472841 kcal Electronic energy + Delta-G solvation = -21411.959691 eV Core-core repulsion = 17997.130608 eV Total energy + Delta-G solvation = -3414.829082 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.96814 -40.24107 -38.54626 -37.40367 -35.98374 -34.70836 -33.85235 -32.00879 -30.02629 -28.79170 -25.49776 -24.42225 -24.37986 -22.19590 -21.96512 -21.28991 -19.15446 -19.04661 -18.37910 -17.92785 -17.13844 -16.87452 -16.72409 -16.28192 -15.98234 -15.69297 -15.31940 -14.90768 -14.80157 -14.44106 -14.22636 -13.96360 -13.76196 -13.32989 -13.25183 -12.87608 -12.67710 -12.54898 -12.25309 -12.10163 -12.05819 -11.88250 -11.77721 -11.61155 -11.40743 -11.35571 -11.30144 -11.03475 -10.78596 -10.41867 -8.31177 -6.36104 0.97605 1.35471 1.37332 1.48493 1.51445 2.34394 3.00006 3.02637 3.04071 3.38582 3.55956 3.71389 3.89667 3.98142 4.00301 4.11585 4.19772 4.32743 4.36030 4.40534 4.59481 4.67235 4.69822 4.72524 4.83432 4.86167 4.92345 4.94857 5.16767 5.21378 5.29507 5.34181 5.47466 5.47656 5.61300 6.24580 6.30361 6.35260 6.61752 6.72152 7.28524 8.85324 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.024808 B = 0.003751 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.382818 B = 7463.811460 C = 8363.242086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.533 4.533 8 H 0.036 0.964 9 C -0.010 4.010 10 C -0.091 4.091 11 C 0.071 3.929 12 O -0.346 6.346 13 C 0.429 3.571 14 O -0.535 6.535 15 C 0.136 3.864 16 H 0.149 0.851 17 O -0.535 6.535 18 C -0.107 4.107 19 C -0.136 4.136 20 C 0.055 3.945 21 O -0.404 6.404 22 C 0.061 3.939 23 C -0.158 4.158 24 H 0.267 0.733 25 H 0.023 0.977 26 H 0.024 0.976 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.395 0.605 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.133 -15.628 -4.594 25.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.571 4.571 8 H 0.055 0.945 9 C -0.047 4.047 10 C -0.128 4.128 11 C -0.002 4.002 12 O -0.262 6.262 13 C 0.273 3.727 14 O -0.425 6.425 15 C 0.075 3.925 16 H 0.167 0.833 17 O -0.342 6.342 18 C -0.126 4.126 19 C -0.174 4.174 20 C -0.022 4.022 21 O -0.323 6.323 22 C -0.015 4.015 23 C -0.196 4.196 24 H 0.076 0.924 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.246 0.754 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.127 0.873 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 19.963 -15.721 -4.064 25.733 hybrid contribution -0.135 1.781 -0.353 1.821 sum 19.828 -13.940 -4.417 24.637 Atomic orbital electron populations 1.70056 1.08268 1.28241 1.52380 1.25992 0.95611 1.03467 0.94073 0.85684 0.79491 0.78348 0.79300 1.19013 1.20970 1.17085 1.21400 0.91689 0.93354 1.50684 0.94516 1.19452 0.94319 0.93902 0.97073 1.21306 0.90591 0.98226 1.02716 1.23198 0.95254 0.79428 1.02349 1.86580 1.24089 1.32749 1.82768 1.25510 0.81090 0.94538 0.71563 1.90665 1.61102 1.44180 1.46563 1.21719 0.82025 0.86690 1.02064 0.83337 1.86627 1.15855 1.77578 1.54186 1.21780 0.97049 0.97957 0.95851 1.22126 1.02360 0.93276 0.99631 1.22769 0.80384 1.02400 0.96610 1.87927 1.20919 1.28687 1.94757 1.22610 0.99028 0.83579 0.96291 1.22350 0.94749 1.02450 1.00057 0.92401 0.95893 0.95768 0.91476 0.91895 0.91582 0.91055 0.75421 0.89644 0.90626 0.88625 0.87301 0.92404 0.92575 0.88446 0.90410 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.07 13.96 21.45 0.30 -58.78 16 2 C 0.01 0.33 5.47 84.66 0.46 0.79 16 3 Si 0.95 43.67 27.47 68.60 1.88 45.56 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 7 C -0.53 -30.26 9.66 25.60 0.25 -30.01 16 8 H 0.04 2.28 7.99 -2.91 -0.02 2.26 16 9 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 10 C -0.09 -3.38 5.53 30.59 0.17 -3.21 16 11 C 0.07 2.24 5.47 71.98 0.39 2.63 16 12 O -0.35 -9.48 7.52 -51.34 -0.39 -9.87 16 13 C 0.43 10.81 7.14 71.23 0.51 11.32 16 14 O -0.54 -16.64 16.07 28.38 0.46 -16.19 16 15 C 0.14 2.36 3.09 29.85 0.09 2.45 16 16 H 0.15 2.27 8.14 -2.38 -0.02 2.25 16 17 O -0.54 -9.07 12.39 -129.95 -1.61 -10.68 16 18 C -0.11 -1.55 2.03 -10.68 -0.02 -1.57 16 19 C -0.14 -1.59 5.23 30.68 0.16 -1.43 16 20 C 0.05 0.69 6.84 72.01 0.49 1.18 16 21 O -0.40 -7.62 10.77 -148.98 -1.60 -9.22 16 22 C 0.06 1.07 6.84 72.01 0.49 1.56 16 23 C -0.16 -2.80 4.79 30.69 0.15 -2.65 16 24 H 0.27 15.49 8.31 -92.71 -0.77 14.71 16 25 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 26 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 27 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.07 2.10 8.13 -2.39 -0.02 2.08 16 30 H 0.07 2.18 8.13 -2.39 -0.02 2.16 16 31 H 0.39 4.83 8.79 -74.06 -0.65 4.17 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.10 0.88 7.79 -2.39 -0.02 0.86 16 35 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 38 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.72 5.78 -2.39 -0.01 1.71 16 Total: -1.00 -69.48 326.20 2.62 -66.85 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.32 Total: 11.60 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 3.27 Total: -19.27 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.30 Total: -58.78 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -3.14 Total: -45.96 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.56 kcal Total: -69.48 2.62 -66.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767357596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.620 kcal (2) G-P(sol) polarization free energy of solvation -69.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds