Wall clock time and date at job start Mon Mar 30 2020 04:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30837 * 125.89517 * 2 1 4 4 N 1.40082 * 108.20379 * 179.97438 * 3 2 1 5 5 C 1.46508 * 126.03408 * 179.97438 * 4 3 2 6 6 C 1.34945 * 107.92841 * 359.75180 * 4 3 2 7 7 C 1.35318 * 107.74207 * 0.39624 * 6 4 3 8 8 C 1.50703 * 126.03640 * 179.86987 * 7 6 4 9 9 N 1.46499 * 109.47138 * 259.68605 * 8 7 6 10 10 C 1.38820 * 119.99837 * 180.27934 * 9 8 7 11 11 C 1.39799 * 119.58489 * 359.45142 * 10 9 8 12 12 C 1.38597 * 119.48774 * 179.79254 * 11 10 9 13 13 C 1.38381 * 118.68341 * 0.47647 * 12 11 10 14 14 C 1.40551 * 119.15049 * 359.74232 * 13 12 11 15 15 C 1.41318 * 119.78791 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99967 * 0.02711 * 15 14 13 17 17 C 1.40023 * 120.00192 * 180.02562 * 15 14 13 18 18 N 1.30745 * 120.00056 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00010 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47354 * 90.00035 * 19 17 15 21 21 H 1.48507 * 109.46980 * 209.99793 * 19 17 15 22 22 H 1.48489 * 109.47282 * 329.99865 * 19 17 15 23 23 N 1.31956 * 119.58597 * 179.72231 * 10 9 8 24 24 H 1.09002 * 109.46837 * 270.02117 * 1 2 3 25 25 H 1.08997 * 109.47240 * 30.03141 * 1 2 3 26 26 H 1.09002 * 109.46495 * 150.02790 * 1 2 3 27 27 H 1.08999 * 109.47157 * 89.97989 * 5 4 3 28 28 H 1.09007 * 109.46750 * 209.97059 * 5 4 3 29 29 H 1.08999 * 109.47257 * 329.97311 * 5 4 3 30 30 H 1.07997 * 126.12887 * 180.23580 * 6 4 3 31 31 H 1.09009 * 109.46601 * 139.68508 * 8 7 6 32 32 H 1.08998 * 109.47035 * 19.69016 * 8 7 6 33 33 H 0.97001 * 119.99790 * 359.97438 * 9 8 7 34 34 H 1.07995 * 120.25565 * 359.97438 * 11 10 9 35 35 H 1.08001 * 120.65519 * 180.22336 * 12 11 10 36 36 H 1.08002 * 120.42829 * 179.77069 * 13 12 11 37 37 H 0.97000 * 120.00060 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 6 4.7898 1.5010 0.0003 6 6 3.6143 -0.7152 0.0065 7 6 2.3272 -1.1329 0.0007 8 6 1.8601 -2.5658 0.0014 9 7 1.4808 -2.9564 -1.3587 10 6 1.0104 -4.2387 -1.6068 11 6 0.9131 -5.1538 -0.5545 12 6 0.4391 -6.4322 -0.8037 13 6 0.0837 -6.7681 -2.0982 14 6 0.2088 -5.8052 -3.1143 15 6 -0.1508 -6.1336 -4.4409 16 1 -0.5207 -7.1218 -4.6713 17 6 -0.0275 -5.1779 -5.4568 18 7 0.4207 -3.9817 -5.1781 19 14 -0.5035 -5.6119 -7.2102 20 1 -1.9379 -5.2945 -7.4268 21 1 0.3262 -4.8248 -8.1576 22 1 -0.2771 -7.0613 -7.4403 23 7 0.6658 -4.5801 -2.8340 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8897 -0.5143 26 1 -0.3632 -0.8903 -0.5134 27 1 5.0823 1.7170 1.0278 28 1 5.6096 0.9978 -0.5126 29 1 4.5565 2.4329 -0.5147 30 1 4.4892 -1.3484 0.0120 31 1 0.9989 -2.6668 0.6620 32 1 2.6655 -3.2103 0.3533 33 1 1.5541 -2.3176 -2.0850 34 1 1.2022 -4.8660 0.4454 35 1 0.3528 -7.1531 -0.0041 36 1 -0.2854 -7.7575 -2.3248 37 1 0.5065 -3.3198 -5.8820 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771761776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:48 Heat of formation + Delta-G solvation = 115.730671 kcal Electronic energy + Delta-G solvation = -19891.039088 eV Core-core repulsion = 16863.073575 eV Total energy + Delta-G solvation = -3027.965513 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.22154 -38.13993 -35.30997 -33.80474 -33.10090 -30.94567 -30.19257 -29.56371 -28.41501 -26.10120 -25.25337 -24.01341 -21.45307 -20.71017 -20.31687 -19.39451 -17.29561 -16.79861 -15.99583 -15.55099 -14.76792 -14.63889 -14.40420 -14.08777 -13.67830 -13.48682 -13.18357 -13.06838 -12.90611 -12.53547 -12.15351 -12.11278 -11.98306 -11.80025 -11.54449 -11.13671 -10.93372 -10.58935 -10.41446 -10.36633 -9.87293 -9.41780 -9.16926 -8.79969 -8.38197 -7.83120 -7.42535 -6.40247 -6.25731 -4.40830 1.88125 2.49160 2.73282 2.93417 3.14835 3.18121 3.31506 3.36514 4.03272 4.39739 4.61213 4.80611 4.91210 4.95917 5.00690 5.20660 5.35582 5.43177 5.63077 5.76173 6.02357 6.06258 6.11637 6.14024 6.22851 6.37872 6.65611 6.75356 6.94251 6.96745 6.99770 7.04031 7.32446 7.67980 7.75892 7.89700 8.00348 8.24740 8.46230 8.79921 8.88050 9.21164 10.32475 10.48036 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019880 B = 0.004470 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.133263 B = 6262.580922 C = 7047.549886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.094 3.906 3 N -0.304 5.304 4 N -0.382 5.382 5 C 0.105 3.895 6 C 0.072 3.928 7 C -0.244 4.244 8 C 0.221 3.779 9 N -0.734 5.734 10 C 0.412 3.588 11 C -0.367 4.367 12 C -0.032 4.032 13 C -0.319 4.319 14 C 0.293 3.707 15 C -0.436 4.436 16 H 0.082 0.918 17 C 0.072 3.928 18 N -0.716 5.716 19 Si 0.903 3.097 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.262 1.262 23 N -0.532 5.532 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.174 0.826 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.395 0.605 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.294 8.919 8.239 13.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.073 4.073 3 N -0.127 5.127 4 N -0.163 5.163 5 C -0.037 4.037 6 C -0.075 4.075 7 C -0.255 4.255 8 C 0.095 3.905 9 N -0.371 5.371 10 C 0.172 3.828 11 C -0.393 4.393 12 C -0.056 4.056 13 C -0.342 4.342 14 C 0.166 3.834 15 C -0.469 4.469 16 H 0.100 0.900 17 C -0.153 4.153 18 N -0.338 5.338 19 Si 0.728 3.272 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.186 1.186 23 N -0.254 5.254 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.191 0.809 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.230 0.770 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.642 11.065 7.673 15.014 hybrid contribution -0.004 -1.383 -0.311 1.417 sum 6.638 9.682 7.362 13.857 Atomic orbital electron populations 1.20235 0.86527 1.03915 1.02819 1.22291 0.96982 0.90084 0.97939 1.77292 0.86310 1.22772 1.26322 1.48338 1.05578 1.04720 1.57681 1.21803 0.83777 0.95029 1.03046 1.22383 0.99344 0.84757 1.01019 1.20109 0.91850 0.96418 1.17149 1.19150 0.98251 0.87902 0.85227 1.44267 1.73348 1.11583 1.07859 1.18549 0.89172 0.84488 0.90588 1.20611 1.24421 0.96663 0.97644 1.20585 0.94962 0.94618 0.95476 1.21518 1.17877 1.00664 0.94116 1.18189 0.86752 0.85822 0.92610 1.19569 1.37394 0.98735 0.91157 0.89994 1.26032 0.93885 0.94622 1.00733 1.70159 1.27738 1.02751 1.33117 0.86409 0.79175 0.79740 0.81912 1.19532 1.20334 1.18640 1.68225 1.21804 1.19534 1.15794 0.90652 0.91091 0.89543 0.91021 0.89554 0.89453 0.80878 0.92453 0.92810 0.77045 0.89177 0.89054 0.88848 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.26 36.01 0.37 -0.64 16 2 C 0.09 1.42 7.22 -82.41 -0.59 0.82 16 3 N -0.30 -4.65 12.58 33.67 0.42 -4.22 16 4 N -0.38 -4.83 4.01 -68.16 -0.27 -5.11 16 5 C 0.10 0.81 11.47 59.85 0.69 1.49 16 6 C 0.07 0.92 11.40 -17.22 -0.20 0.72 16 7 C -0.24 -3.61 5.47 -105.05 -0.57 -4.18 16 8 C 0.22 3.59 4.99 -5.19 -0.03 3.56 16 9 N -0.73 -14.99 5.71 -61.57 -0.35 -15.34 16 10 C 0.41 10.14 7.65 -155.32 -1.19 8.95 16 11 C -0.37 -8.51 9.34 -38.87 -0.36 -8.87 16 12 C -0.03 -0.75 10.15 -39.40 -0.40 -1.15 16 13 C -0.32 -8.17 9.83 -38.66 -0.38 -8.55 16 14 C 0.29 8.28 6.55 -85.00 -0.56 7.72 16 15 C -0.44 -12.00 9.14 -37.74 -0.34 -12.35 16 16 H 0.08 2.12 7.85 -52.49 -0.41 1.70 16 17 C 0.07 1.88 5.50 -17.35 -0.10 1.78 16 18 N -0.72 -19.38 11.46 55.55 0.64 -18.74 16 19 Si 0.90 19.03 29.56 -169.99 -5.02 14.00 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 23 N -0.53 -14.87 7.89 -10.33 -0.08 -14.95 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.09 1.25 7.96 -51.93 -0.41 0.84 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.06 0.92 7.93 -51.92 -0.41 0.51 16 32 H 0.05 0.84 7.90 -51.93 -0.41 0.43 16 33 H 0.40 8.41 8.58 -40.82 -0.35 8.06 16 34 H 0.09 1.85 6.68 -52.49 -0.35 1.49 16 35 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 37 H 0.27 6.63 8.29 -40.82 -0.34 6.30 16 LS Contribution 321.56 15.07 4.85 4.85 Total: -1.00 -32.45 321.56 -8.35 -40.80 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -4.87 Total: 9.40 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -3.66 Total: -10.69 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 0.35 Total: -58.36 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.45 -8.35 -40.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771761776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.533 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds