Wall clock time and date at job start Mon Mar 30 2020 04:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30837 * 125.89517 * 2 1 4 4 N 1.40082 * 108.20379 * 179.97438 * 3 2 1 5 5 C 1.46508 * 126.03408 * 179.97438 * 4 3 2 6 6 C 1.34945 * 107.92841 * 359.75180 * 4 3 2 7 7 C 1.35318 * 107.74207 * 0.39624 * 6 4 3 8 8 C 1.50703 * 126.03640 * 179.86987 * 7 6 4 9 9 N 1.46499 * 109.47138 * 259.68605 * 8 7 6 10 10 C 1.38820 * 119.99837 * 180.27934 * 9 8 7 11 11 C 1.39799 * 119.58489 * 359.45142 * 10 9 8 12 12 C 1.38597 * 119.48774 * 179.79254 * 11 10 9 13 13 C 1.38381 * 118.68341 * 0.47647 * 12 11 10 14 14 C 1.40551 * 119.15049 * 359.74232 * 13 12 11 15 15 C 1.41318 * 119.78791 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99967 * 0.02711 * 15 14 13 17 17 C 1.40023 * 120.00192 * 180.02562 * 15 14 13 18 18 N 1.30745 * 120.00056 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00010 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47354 * 90.00035 * 19 17 15 21 21 H 1.48507 * 109.46980 * 209.99793 * 19 17 15 22 22 H 1.48489 * 109.47282 * 329.99865 * 19 17 15 23 23 N 1.31956 * 119.58597 * 179.72231 * 10 9 8 24 24 H 1.09002 * 109.46837 * 270.02117 * 1 2 3 25 25 H 1.08997 * 109.47240 * 30.03141 * 1 2 3 26 26 H 1.09002 * 109.46495 * 150.02790 * 1 2 3 27 27 H 1.08999 * 109.47157 * 89.97989 * 5 4 3 28 28 H 1.09007 * 109.46750 * 209.97059 * 5 4 3 29 29 H 1.08999 * 109.47257 * 329.97311 * 5 4 3 30 30 H 1.07997 * 126.12887 * 180.23580 * 6 4 3 31 31 H 1.09009 * 109.46601 * 139.68508 * 8 7 6 32 32 H 1.08998 * 109.47035 * 19.69016 * 8 7 6 33 33 H 0.97001 * 119.99790 * 359.97438 * 9 8 7 34 34 H 1.07995 * 120.25565 * 359.97438 * 11 10 9 35 35 H 1.08001 * 120.65519 * 180.22336 * 12 11 10 36 36 H 1.08002 * 120.42829 * 179.77069 * 13 12 11 37 37 H 0.97000 * 120.00060 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 6 4.7898 1.5010 0.0003 6 6 3.6143 -0.7152 0.0065 7 6 2.3272 -1.1329 0.0007 8 6 1.8601 -2.5658 0.0014 9 7 1.4808 -2.9564 -1.3587 10 6 1.0104 -4.2387 -1.6068 11 6 0.9131 -5.1538 -0.5545 12 6 0.4391 -6.4322 -0.8037 13 6 0.0837 -6.7681 -2.0982 14 6 0.2088 -5.8052 -3.1143 15 6 -0.1508 -6.1336 -4.4409 16 1 -0.5207 -7.1218 -4.6713 17 6 -0.0275 -5.1779 -5.4568 18 7 0.4207 -3.9817 -5.1781 19 14 -0.5035 -5.6119 -7.2102 20 1 -1.9379 -5.2945 -7.4268 21 1 0.3262 -4.8248 -8.1576 22 1 -0.2771 -7.0613 -7.4403 23 7 0.6658 -4.5801 -2.8340 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8897 -0.5143 26 1 -0.3632 -0.8903 -0.5134 27 1 5.0823 1.7170 1.0278 28 1 5.6096 0.9978 -0.5126 29 1 4.5565 2.4329 -0.5147 30 1 4.4892 -1.3484 0.0120 31 1 0.9989 -2.6668 0.6620 32 1 2.6655 -3.2103 0.3533 33 1 1.5541 -2.3176 -2.0850 34 1 1.2022 -4.8660 0.4454 35 1 0.3528 -7.1531 -0.0041 36 1 -0.2854 -7.7575 -2.3248 37 1 0.5065 -3.3198 -5.8820 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771761776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:47 Heat of formation + Delta-G solvation = 95.655676 kcal Electronic energy + Delta-G solvation = -19891.909605 eV Core-core repulsion = 16863.073575 eV Total energy + Delta-G solvation = -3028.836030 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.25825 -40.00774 -36.84904 -35.26212 -34.58827 -32.46519 -31.91066 -30.65707 -29.94536 -27.38288 -27.06305 -25.14266 -23.30665 -22.21606 -21.68786 -20.52140 -19.20019 -18.16399 -17.37721 -16.61282 -16.48187 -16.30775 -15.80561 -15.54200 -14.95378 -14.84233 -14.65251 -14.31633 -14.16941 -13.87670 -13.58275 -13.43270 -12.99584 -12.97819 -12.90704 -12.75041 -12.68055 -12.52086 -12.17815 -11.70998 -11.54641 -11.22919 -10.58796 -10.20171 -9.77188 -9.45369 -9.36098 -8.19740 -8.18031 -6.43286 0.87079 1.11623 1.41595 1.42654 1.55767 1.57639 1.61354 1.64624 2.27261 2.97245 2.99401 3.54397 3.87039 4.11163 4.18904 4.27061 4.42476 4.43712 4.44683 4.51320 4.67960 4.71623 4.74947 4.89223 4.99725 5.04219 5.06721 5.09602 5.17933 5.20716 5.42547 5.66531 5.78323 6.03274 6.10363 6.14690 6.27979 6.63639 6.70669 6.89976 7.01064 7.29929 8.41014 8.56359 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019880 B = 0.004470 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.133263 B = 6262.580922 C = 7047.549886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.079 3.921 3 N -0.333 5.333 4 N -0.379 5.379 5 C 0.094 3.906 6 C 0.084 3.916 7 C -0.269 4.269 8 C 0.226 3.774 9 N -0.726 5.726 10 C 0.396 3.604 11 C -0.364 4.364 12 C -0.029 4.029 13 C -0.346 4.346 14 C 0.261 3.739 15 C -0.475 4.475 16 H 0.085 0.915 17 C 0.028 3.972 18 N -0.753 5.753 19 Si 0.984 3.016 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.256 1.256 23 N -0.567 5.567 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.207 0.793 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.388 0.612 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.100 0.900 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.484 9.215 8.919 14.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 N -0.157 5.157 4 N -0.160 5.160 5 C -0.046 4.046 6 C -0.064 4.064 7 C -0.281 4.281 8 C 0.102 3.898 9 N -0.361 5.361 10 C 0.155 3.845 11 C -0.390 4.390 12 C -0.054 4.054 13 C -0.369 4.369 14 C 0.133 3.867 15 C -0.507 4.507 16 H 0.103 0.897 17 C -0.194 4.194 18 N -0.376 5.376 19 Si 0.804 3.196 20 H -0.189 1.189 21 H -0.194 1.194 22 H -0.180 1.180 23 N -0.289 5.289 24 H 0.110 0.890 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.109 0.891 28 H 0.131 0.869 29 H 0.107 0.893 30 H 0.223 0.777 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.221 0.779 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.118 0.882 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.852 11.399 8.404 16.193 hybrid contribution -0.263 -1.377 -0.357 1.447 sum 7.589 10.022 8.046 14.926 Atomic orbital electron populations 1.20204 0.86105 1.03125 1.03682 1.22521 0.97648 0.90364 0.98119 1.77230 0.87753 1.23274 1.27411 1.48750 1.05785 1.05340 1.56103 1.22218 0.82699 0.94829 1.04813 1.22855 0.99645 0.85181 0.98750 1.20033 0.92904 0.95457 1.19729 1.19224 0.98579 0.89198 0.82820 1.44471 1.72298 1.09927 1.09405 1.18991 0.88994 0.86208 0.90317 1.20964 1.23123 0.96277 0.98596 1.21003 0.93349 0.95457 0.95549 1.21676 1.19504 1.00801 0.94954 1.18653 0.87487 0.86753 0.93781 1.19924 1.39059 0.99575 0.92112 0.89696 1.26922 0.93269 0.94127 1.05071 1.70265 1.28710 1.03815 1.34773 0.85200 0.78919 0.79643 0.75831 1.18887 1.19445 1.17980 1.68191 1.23102 1.19926 1.17727 0.88968 0.90732 0.91347 0.89067 0.86863 0.89270 0.77679 0.92340 0.91601 0.77897 0.86128 0.85315 0.88168 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.92 10.26 71.24 0.73 -1.19 16 2 C 0.08 2.35 7.22 43.10 0.31 2.67 16 3 N -0.33 -9.84 12.58 -47.39 -0.60 -10.44 16 4 N -0.38 -8.77 4.01 -369.54 -1.48 -10.25 16 5 C 0.09 1.18 11.47 127.77 1.47 2.64 16 6 C 0.08 1.94 11.40 83.54 0.95 2.89 16 7 C -0.27 -7.64 5.47 -20.14 -0.11 -7.75 16 8 C 0.23 7.06 4.99 85.63 0.43 7.48 16 9 N -0.73 -29.63 5.71 -348.70 -1.99 -31.62 16 10 C 0.40 19.55 7.65 133.42 1.02 20.57 16 11 C -0.36 -16.36 9.34 22.73 0.21 -16.15 16 12 C -0.03 -1.34 10.15 22.39 0.23 -1.11 16 13 C -0.35 -17.96 9.83 22.87 0.22 -17.73 16 14 C 0.26 15.14 6.55 40.18 0.26 15.40 16 15 C -0.47 -26.91 9.14 23.46 0.21 -26.70 16 16 H 0.08 4.53 7.85 -2.91 -0.02 4.51 16 17 C 0.03 1.46 5.50 85.29 0.47 1.93 16 18 N -0.75 -41.88 11.46 21.84 0.25 -41.63 16 19 Si 0.98 39.55 29.56 68.60 2.03 41.58 16 20 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 22 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 23 N -0.57 -32.51 7.89 -186.59 -1.47 -33.98 16 24 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.07 2.04 7.96 -2.39 -0.02 2.02 16 27 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.21 3.23 8.06 -2.91 -0.02 3.21 16 31 H 0.06 1.81 7.93 -2.38 -0.02 1.79 16 32 H 0.07 1.90 7.90 -2.39 -0.02 1.88 16 33 H 0.39 16.83 8.58 -92.71 -0.80 16.03 16 34 H 0.12 4.60 6.68 -2.91 -0.02 4.58 16 35 H 0.13 4.79 8.06 -2.91 -0.02 4.76 16 36 H 0.10 4.87 8.06 -2.91 -0.02 4.84 16 37 H 0.27 13.84 8.29 -92.71 -0.77 13.07 16 Total: -1.00 -71.97 321.56 3.43 -68.54 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: 0.29 Total: 34.85 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: 6.41 Total: -17.05 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -5.29 Total: -127.93 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Total: -71.97 3.43 -68.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771761776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.198 kcal (2) G-P(sol) polarization free energy of solvation -71.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds