Wall clock time and date at job start Mon Mar 30 2020 04:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30603 * 125.13412 * 2 1 4 4 C 1.34505 * 109.82960 * 180.02562 * 3 2 1 5 5 C 1.46938 * 126.44309 * 180.02562 * 4 3 2 6 6 N 1.29989 * 119.99933 * 359.97438 * 5 4 3 7 7 N 1.40102 * 119.99997 * 179.97438 * 6 5 4 8 8 C 1.46503 * 119.99993 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.46910 * 329.99981 * 8 7 6 10 10 C 1.52998 * 109.46994 * 90.00337 * 8 7 6 11 11 C 1.50696 * 109.46984 * 209.99952 * 8 7 6 12 12 H 1.08007 * 120.00443 * 0.02562 * 11 8 7 13 13 C 1.37880 * 120.00269 * 180.02562 * 11 8 7 14 14 N 1.31522 * 119.99358 * 359.97438 * 13 11 8 15 15 Si 1.86795 * 120.00379 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47324 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47133 * 120.00195 * 15 13 11 18 18 H 1.48508 * 109.46850 * 239.99678 * 15 13 11 19 19 C 1.39688 * 107.11211 * 359.97438 * 4 3 2 20 20 C 1.40325 * 133.69561 * 180.02562 * 19 4 3 21 21 C 1.36195 * 119.21402 * 179.97438 * 20 19 4 22 22 C 1.40663 * 119.69689 * 0.06174 * 21 20 19 23 23 C 1.34803 * 120.53835 * 359.90451 * 22 21 20 24 24 N 1.35786 * 125.13367 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47137 * 269.97960 * 1 2 3 26 26 H 1.08995 * 109.46976 * 29.98252 * 1 2 3 27 27 H 1.09000 * 109.46835 * 149.97954 * 1 2 3 28 28 H 1.08003 * 119.99872 * 179.97438 * 5 4 3 29 29 H 0.96996 * 119.99773 * 359.97438 * 7 6 5 30 30 H 1.08995 * 109.47336 * 179.97438 * 10 8 7 31 31 H 1.09003 * 109.47268 * 300.00186 * 10 8 7 32 32 H 1.09002 * 109.47258 * 59.99375 * 10 8 7 33 33 H 0.96997 * 119.99436 * 180.02562 * 14 13 11 34 34 H 1.08001 * 120.39635 * 359.72636 * 20 19 4 35 35 H 1.07992 * 120.15310 * 180.02562 * 21 20 19 36 36 H 1.07997 * 119.72945 * 179.97438 * 22 21 20 37 37 H 1.08007 * 119.72949 * 180.08197 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2586 1.0681 0.0000 4 6 3.5559 0.7131 -0.0006 5 6 4.7098 1.6228 -0.0002 6 7 4.5232 2.9092 0.0002 7 7 5.6234 3.7766 0.0011 8 6 5.4131 5.2265 0.0010 9 1 4.4806 5.4583 -0.5135 10 6 5.3389 5.7311 1.4434 11 6 6.5593 5.9002 -0.7085 12 1 7.3637 5.3077 -1.1188 13 6 6.5811 7.2731 -0.8340 14 7 5.6012 7.9946 -0.3348 15 14 8.0014 8.1083 -1.7140 16 1 8.9673 7.0813 -2.1805 17 1 7.4833 8.8673 -2.8805 18 1 8.6830 9.0403 -0.7801 19 6 3.6000 -0.6831 -0.0003 20 6 4.6447 -1.6200 -0.0002 21 6 4.3458 -2.9488 0.0005 22 6 3.0008 -3.3606 -0.0001 23 6 2.0060 -2.4510 0.0004 24 7 2.2884 -1.1105 -0.0005 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 5.7130 1.2226 -0.0003 29 1 6.5244 3.4172 0.0017 30 1 5.1829 6.8098 1.4434 31 1 4.5100 5.2437 1.9567 32 1 6.2715 5.4992 1.9580 33 1 5.6163 8.9604 -0.4234 34 1 5.6734 -1.2914 -0.0048 35 1 5.1379 -3.6829 0.0010 36 1 2.7633 -4.4141 0.0000 37 1 0.9778 -2.7817 0.0012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771884843.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:02 Heat of formation + Delta-G solvation = 124.769109 kcal Electronic energy + Delta-G solvation = -19428.957649 eV Core-core repulsion = 16401.384072 eV Total energy + Delta-G solvation = -3027.573577 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.60322 -37.50734 -36.28021 -34.28002 -33.23876 -31.49314 -31.12254 -30.01426 -27.91835 -26.05428 -25.14849 -23.80110 -22.93444 -21.26008 -20.30424 -19.74047 -17.43049 -16.81477 -16.43513 -15.97872 -15.80697 -15.43694 -15.02698 -14.58951 -14.09448 -13.54044 -13.21904 -13.04120 -12.62086 -12.51583 -12.39413 -12.25245 -11.82060 -11.73335 -11.35141 -11.01723 -10.90366 -10.68809 -10.32740 -10.19796 -10.07731 -10.00146 -9.39186 -9.25922 -8.93578 -8.47525 -7.70915 -6.48964 -6.08034 -4.16303 0.70633 1.14288 2.56637 2.59132 3.24816 3.26875 3.34162 3.37648 3.86122 3.93178 4.32138 4.36229 4.43035 4.63985 4.71774 4.94392 4.94858 5.23606 5.24698 5.35761 5.42595 5.59055 5.74065 5.78484 5.96870 6.09731 6.15945 6.54092 6.61103 6.82366 6.99022 7.09111 7.23153 7.25982 7.64252 7.84276 7.93449 8.09735 8.23447 8.37940 8.92021 9.44706 9.50395 10.97754 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031963 B = 0.003322 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.808596 B = 8426.532594 C = 8982.088916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.164 3.836 3 N -0.422 5.422 4 C 0.101 3.899 5 C 0.016 3.984 6 N -0.169 5.169 7 N -0.623 5.623 8 C 0.297 3.703 9 H 0.043 0.957 10 C -0.150 4.150 11 C -0.529 4.529 12 H 0.060 0.940 13 C 0.066 3.934 14 N -0.885 5.885 15 Si 0.903 3.097 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.004 4.004 20 C -0.054 4.054 21 C -0.144 4.144 22 C -0.134 4.134 23 C 0.045 3.955 24 N -0.368 5.368 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.367 0.633 30 H 0.090 0.910 31 H 0.013 0.987 32 H 0.025 0.975 33 H 0.263 0.737 34 H 0.144 0.856 35 H 0.133 0.867 36 H 0.143 0.857 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.493 -22.977 1.323 23.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.092 4.092 3 N -0.138 5.138 4 C -0.035 4.035 5 C -0.193 4.193 6 N 0.017 4.983 7 N -0.360 5.360 8 C 0.195 3.805 9 H 0.061 0.939 10 C -0.209 4.209 11 C -0.568 4.568 12 H 0.078 0.922 13 C -0.137 4.137 14 N -0.523 5.523 15 Si 0.730 3.270 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.113 4.113 20 C -0.074 4.074 21 C -0.165 4.165 22 C -0.156 4.156 23 C -0.075 4.075 24 N -0.042 5.042 25 H 0.097 0.903 26 H 0.112 0.888 27 H 0.088 0.912 28 H 0.126 0.874 29 H 0.203 0.797 30 H 0.108 0.892 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.162 0.838 35 H 0.151 0.849 36 H 0.161 0.839 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.731 -20.981 1.337 22.400 hybrid contribution 2.145 -1.074 -0.417 2.434 sum -5.586 -22.055 0.920 22.770 Atomic orbital electron populations 1.20135 0.84536 1.03936 1.03373 1.23418 0.95677 0.79171 1.10888 1.70281 1.01836 1.26326 1.15380 1.18758 0.90290 0.87377 1.07093 1.22218 0.93481 0.89850 1.13724 1.74228 1.18356 1.03246 1.02493 1.49120 1.01161 1.05347 1.80368 1.18539 0.97732 0.71266 0.93004 0.93908 1.22197 0.97175 1.03798 0.97752 1.21288 1.07053 0.91838 1.36646 0.92150 1.24870 0.96345 0.97040 0.95466 1.69915 1.31452 1.06126 1.44840 0.86373 0.81925 0.79373 0.79303 1.19787 1.20852 1.20881 1.19232 0.84081 0.94364 1.13663 1.20462 0.98005 0.91542 0.97343 1.20981 0.96344 0.95682 1.03500 1.20745 0.92427 0.99495 1.02898 1.21541 1.00971 0.80667 1.04338 1.42842 1.07832 1.05906 1.47585 0.90330 0.88816 0.91204 0.87370 0.79750 0.89186 0.96756 0.95603 0.92658 0.83812 0.84901 0.83921 0.82286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.33 36.00 0.37 -0.21 16 2 C 0.16 2.37 7.95 -154.65 -1.23 1.14 16 3 N -0.42 -7.91 11.20 -6.78 -0.08 -7.99 16 4 C 0.10 1.83 7.06 -82.63 -0.58 1.25 16 5 C 0.02 0.30 10.98 -14.81 -0.16 0.14 16 6 N -0.17 -3.86 11.47 32.07 0.37 -3.49 16 7 N -0.62 -14.66 6.10 -5.88 -0.04 -14.70 16 8 C 0.30 7.94 3.23 -69.08 -0.22 7.72 16 9 H 0.04 1.28 8.14 -51.93 -0.42 0.86 16 10 C -0.15 -3.87 9.29 37.16 0.35 -3.52 16 11 C -0.53 -14.64 8.74 -34.44 -0.30 -14.94 16 12 H 0.06 1.63 7.79 -52.48 -0.41 1.22 16 13 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 14 N -0.89 -25.35 11.32 55.43 0.63 -24.72 16 15 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 C 0.00 -0.05 6.77 -83.79 -0.57 -0.62 16 20 C -0.05 -0.60 10.09 -39.53 -0.40 -1.00 16 21 C -0.14 -1.25 10.08 -39.40 -0.40 -1.64 16 22 C -0.13 -1.03 9.97 -39.88 -0.40 -1.43 16 23 C 0.05 0.40 10.80 -16.46 -0.18 0.23 16 24 N -0.37 -4.79 2.96 -57.79 -0.17 -4.96 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.07 0.46 8.02 -51.93 -0.42 0.05 16 28 H 0.11 1.73 8.03 -52.48 -0.42 1.31 16 29 H 0.37 7.83 8.58 -182.60 -1.57 6.27 16 30 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 37 H 0.16 0.85 7.97 -52.48 -0.42 0.43 16 LS Contribution 324.14 15.07 4.88 4.88 Total: -1.00 -33.59 324.14 -9.30 -42.89 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.06 Total: 3.10 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -3.82 Total: -11.18 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.71 Total: -55.86 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.59 -9.30 -42.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884843.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.659 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds