Wall clock time and date at job start Mon Mar 30 2020 04:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30603 * 125.13412 * 2 1 4 4 C 1.34505 * 109.82960 * 180.02562 * 3 2 1 5 5 C 1.46938 * 126.44309 * 180.02562 * 4 3 2 6 6 N 1.29989 * 119.99933 * 359.97438 * 5 4 3 7 7 N 1.40102 * 119.99997 * 179.97438 * 6 5 4 8 8 C 1.46503 * 119.99993 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.46910 * 329.99981 * 8 7 6 10 10 C 1.52998 * 109.46994 * 90.00337 * 8 7 6 11 11 C 1.50696 * 109.46984 * 209.99952 * 8 7 6 12 12 H 1.08007 * 120.00443 * 0.02562 * 11 8 7 13 13 C 1.37880 * 120.00269 * 180.02562 * 11 8 7 14 14 N 1.31522 * 119.99358 * 359.97438 * 13 11 8 15 15 Si 1.86795 * 120.00379 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47324 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47133 * 120.00195 * 15 13 11 18 18 H 1.48508 * 109.46850 * 239.99678 * 15 13 11 19 19 C 1.39688 * 107.11211 * 359.97438 * 4 3 2 20 20 C 1.40325 * 133.69561 * 180.02562 * 19 4 3 21 21 C 1.36195 * 119.21402 * 179.97438 * 20 19 4 22 22 C 1.40663 * 119.69689 * 0.06174 * 21 20 19 23 23 C 1.34803 * 120.53835 * 359.90451 * 22 21 20 24 24 N 1.35786 * 125.13367 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47137 * 269.97960 * 1 2 3 26 26 H 1.08995 * 109.46976 * 29.98252 * 1 2 3 27 27 H 1.09000 * 109.46835 * 149.97954 * 1 2 3 28 28 H 1.08003 * 119.99872 * 179.97438 * 5 4 3 29 29 H 0.96996 * 119.99773 * 359.97438 * 7 6 5 30 30 H 1.08995 * 109.47336 * 179.97438 * 10 8 7 31 31 H 1.09003 * 109.47268 * 300.00186 * 10 8 7 32 32 H 1.09002 * 109.47258 * 59.99375 * 10 8 7 33 33 H 0.96997 * 119.99436 * 180.02562 * 14 13 11 34 34 H 1.08001 * 120.39635 * 359.72636 * 20 19 4 35 35 H 1.07992 * 120.15310 * 180.02562 * 21 20 19 36 36 H 1.07997 * 119.72945 * 179.97438 * 22 21 20 37 37 H 1.08007 * 119.72949 * 180.08197 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2586 1.0681 0.0000 4 6 3.5559 0.7131 -0.0006 5 6 4.7098 1.6228 -0.0002 6 7 4.5232 2.9092 0.0002 7 7 5.6234 3.7766 0.0011 8 6 5.4131 5.2265 0.0010 9 1 4.4806 5.4583 -0.5135 10 6 5.3389 5.7311 1.4434 11 6 6.5593 5.9002 -0.7085 12 1 7.3637 5.3077 -1.1188 13 6 6.5811 7.2731 -0.8340 14 7 5.6012 7.9946 -0.3348 15 14 8.0014 8.1083 -1.7140 16 1 8.9673 7.0813 -2.1805 17 1 7.4833 8.8673 -2.8805 18 1 8.6830 9.0403 -0.7801 19 6 3.6000 -0.6831 -0.0003 20 6 4.6447 -1.6200 -0.0002 21 6 4.3458 -2.9488 0.0005 22 6 3.0008 -3.3606 -0.0001 23 6 2.0060 -2.4510 0.0004 24 7 2.2884 -1.1105 -0.0005 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 5.7130 1.2226 -0.0003 29 1 6.5244 3.4172 0.0017 30 1 5.1829 6.8098 1.4434 31 1 4.5100 5.2437 1.9567 32 1 6.2715 5.4992 1.9580 33 1 5.6163 8.9604 -0.4234 34 1 5.6734 -1.2914 -0.0048 35 1 5.1379 -3.6829 0.0010 36 1 2.7633 -4.4141 0.0000 37 1 0.9778 -2.7817 0.0012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771884843.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:01 Heat of formation + Delta-G solvation = 103.102211 kcal Electronic energy + Delta-G solvation = -19429.897196 eV Core-core repulsion = 16401.384072 eV Total energy + Delta-G solvation = -3028.513124 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.61786 -38.47960 -37.91934 -35.95830 -34.54605 -32.99406 -32.35364 -30.92059 -29.50877 -27.44661 -27.09307 -24.69161 -24.18917 -22.26420 -22.20851 -21.06583 -18.94122 -18.03802 -17.67157 -17.03465 -16.99558 -16.88737 -16.44505 -15.81821 -15.31437 -14.89896 -14.48661 -14.34882 -14.10956 -13.94622 -13.48859 -13.31515 -13.00647 -12.95334 -12.89135 -12.66268 -12.44254 -12.34499 -12.17732 -12.06832 -11.50132 -11.20597 -11.10039 -10.83995 -10.58851 -10.21137 -9.08169 -8.19473 -7.84814 -6.35404 -0.14279 0.23441 1.28531 1.42349 1.42873 1.55674 1.64300 2.21799 2.36586 2.48629 2.70292 3.10818 3.38912 3.60215 3.82423 3.91833 4.04791 4.21789 4.28956 4.52741 4.66243 4.72001 4.77287 4.84121 4.97206 4.99391 5.04692 5.11522 5.19310 5.27916 5.37908 5.51693 5.59966 5.71556 5.77453 5.86820 6.16584 6.33248 6.43252 6.85005 7.00788 7.36204 7.86113 8.88309 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031963 B = 0.003322 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.808596 B = 8426.532594 C = 8982.088916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.149 3.851 3 N -0.475 5.475 4 C 0.016 3.984 5 C 0.064 3.936 6 N -0.240 5.240 7 N -0.642 5.642 8 C 0.308 3.692 9 H -0.006 1.006 10 C -0.134 4.134 11 C -0.547 4.547 12 H 0.063 0.937 13 C 0.015 3.985 14 N -0.917 5.917 15 Si 0.976 3.024 16 H -0.265 1.265 17 H -0.280 1.280 18 H -0.274 1.274 19 C 0.023 3.977 20 C -0.101 4.101 21 C -0.103 4.103 22 C -0.131 4.131 23 C 0.039 3.961 24 N -0.368 5.368 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.134 0.866 29 H 0.372 0.628 30 H 0.070 0.930 31 H 0.011 0.989 32 H 0.033 0.967 33 H 0.267 0.733 34 H 0.156 0.844 35 H 0.171 0.829 36 H 0.191 0.809 37 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.275 -27.709 1.002 28.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.107 4.107 3 N -0.191 5.191 4 C -0.118 4.118 5 C -0.146 4.146 6 N -0.050 5.050 7 N -0.380 5.380 8 C 0.204 3.796 9 H 0.012 0.988 10 C -0.194 4.194 11 C -0.586 4.586 12 H 0.081 0.919 13 C -0.185 4.185 14 N -0.555 5.555 15 Si 0.800 3.200 16 H -0.189 1.189 17 H -0.205 1.205 18 H -0.200 1.200 19 C -0.090 4.090 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.151 4.151 23 C -0.081 4.081 24 N -0.040 5.040 25 H 0.110 0.890 26 H 0.101 0.899 27 H 0.124 0.876 28 H 0.151 0.849 29 H 0.210 0.790 30 H 0.089 0.911 31 H 0.030 0.970 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.174 0.826 35 H 0.189 0.811 36 H 0.208 0.792 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -7.517 -25.711 1.022 26.807 hybrid contribution 1.911 -0.229 -0.308 1.949 sum -5.606 -25.941 0.714 26.549 Atomic orbital electron populations 1.20300 0.81488 1.05198 1.04590 1.24079 0.97174 0.78826 1.10669 1.70109 1.02937 1.29355 1.16650 1.18760 0.89994 0.88942 1.14087 1.22839 0.95503 0.89123 1.07163 1.74272 1.18228 1.04706 1.07823 1.48504 1.01590 1.04169 1.83719 1.18091 0.95303 0.73654 0.92510 0.98839 1.22007 0.97335 1.02271 0.97746 1.21560 1.07344 0.92519 1.37183 0.91872 1.25798 0.99044 0.97575 0.96035 1.70052 1.33260 1.06503 1.45693 0.85244 0.78505 0.78212 0.78017 1.18927 1.20526 1.19959 1.19518 0.85832 0.93526 1.10105 1.20750 0.97887 0.92296 1.01128 1.21623 0.98199 0.95070 0.97549 1.21418 0.91441 1.01610 1.00649 1.22505 1.03844 0.78733 1.03016 1.43114 1.06958 1.07369 1.46551 0.89029 0.89870 0.87575 0.84899 0.79045 0.91135 0.96962 0.94820 0.92375 0.82642 0.81148 0.79223 0.78203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.01 10.33 71.24 0.74 -0.28 16 2 C 0.15 4.26 7.95 137.86 1.10 5.35 16 3 N -0.47 -18.74 11.20 -175.35 -1.96 -20.71 16 4 C 0.02 0.61 7.06 41.36 0.29 0.90 16 5 C 0.06 2.60 10.98 87.25 0.96 3.56 16 6 N -0.24 -11.83 11.47 -52.46 -0.60 -12.43 16 7 N -0.64 -32.42 6.10 -172.53 -1.05 -33.47 16 8 C 0.31 17.71 3.23 44.24 0.14 17.85 16 9 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 10 C -0.13 -7.38 9.29 71.98 0.67 -6.71 16 11 C -0.55 -31.62 8.74 25.60 0.22 -31.39 16 12 H 0.06 3.52 7.79 -2.91 -0.02 3.49 16 13 C 0.02 0.87 5.30 84.65 0.45 1.32 16 14 N -0.92 -54.57 11.32 21.45 0.24 -54.32 16 15 Si 0.98 44.25 29.54 68.60 2.03 46.27 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 C 0.02 0.66 6.77 39.04 0.26 0.92 16 20 C -0.10 -1.97 10.09 22.30 0.22 -1.75 16 21 C -0.10 -1.21 10.08 22.39 0.23 -0.98 16 22 C -0.13 -1.15 9.97 22.07 0.22 -0.93 16 23 C 0.04 0.49 10.80 83.10 0.90 1.39 16 24 N -0.37 -8.74 2.96 -336.76 -1.00 -9.74 16 25 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 27 H 0.11 1.03 8.02 -2.39 -0.02 1.01 16 28 H 0.13 4.39 8.03 -2.91 -0.02 4.37 16 29 H 0.37 16.93 8.58 -213.32 -1.83 15.10 16 30 H 0.07 4.11 6.07 -2.39 -0.01 4.10 16 31 H 0.01 0.61 8.14 -2.39 -0.02 0.60 16 32 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 34 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 35 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 36 H 0.19 0.02 8.06 -2.91 -0.02 0.00 16 37 H 0.20 0.84 7.97 -2.91 -0.02 0.82 16 Total: -1.00 -81.23 324.14 3.30 -77.93 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -0.75 Total: 17.21 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 6.40 Total: -10.74 kcal Atomic # 7 Polarization: -126.30 SS G_CDS: -4.37 Total: -130.67 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -81.23 3.30 -77.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884843.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.033 kcal (2) G-P(sol) polarization free energy of solvation -81.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds