Wall clock time and date at job start Mon Mar 30 2020 04:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30602 * 125.13485 * 2 1 4 4 C 1.34503 * 109.82910 * 179.97438 * 3 2 1 5 5 C 1.46934 * 126.44627 * 179.97438 * 4 3 2 6 6 N 1.29998 * 119.99453 * 0.02562 * 5 4 3 7 7 N 1.40107 * 119.99474 * 180.02562 * 6 5 4 8 8 C 1.46494 * 119.99690 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.47332 * 30.00496 * 8 7 6 10 10 C 1.52998 * 109.47126 * 269.99972 * 8 7 6 11 11 C 1.50704 * 109.46846 * 150.00156 * 8 7 6 12 12 H 1.07997 * 120.00269 * 34.99941 * 11 8 7 13 13 C 1.37876 * 119.99752 * 215.00200 * 11 8 7 14 14 N 1.31512 * 119.99797 * 184.91466 * 13 11 8 15 15 Si 1.86802 * 120.00389 * 4.91686 * 13 11 8 16 16 H 1.48496 * 109.47292 * 84.83270 * 15 13 11 17 17 H 1.48494 * 109.47356 * 204.83716 * 15 13 11 18 18 H 1.48500 * 109.46883 * 324.83503 * 15 13 11 19 19 C 1.39691 * 107.10913 * 0.22702 * 4 3 2 20 20 C 1.40331 * 133.69222 * 179.74933 * 19 4 3 21 21 C 1.36196 * 119.21238 * 180.02562 * 20 19 4 22 22 C 1.40664 * 119.69683 * 359.97438 * 21 20 19 23 23 C 1.34807 * 120.53907 * 359.62605 * 22 21 20 24 24 N 1.35788 * 125.13032 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.46746 * 90.01920 * 1 2 3 26 26 H 1.08995 * 109.47147 * 210.02336 * 1 2 3 27 27 H 1.08998 * 109.46683 * 330.02531 * 1 2 3 28 28 H 1.07997 * 120.00268 * 180.02562 * 5 4 3 29 29 H 0.96998 * 119.99927 * 359.97438 * 7 6 5 30 30 H 1.08998 * 109.47042 * 55.03122 * 10 8 7 31 31 H 1.08998 * 109.47545 * 295.02883 * 10 8 7 32 32 H 1.09005 * 109.46882 * 175.02956 * 10 8 7 33 33 H 0.97006 * 119.99713 * 179.97438 * 14 13 11 34 34 H 1.07992 * 120.39780 * 0.04877 * 20 19 4 35 35 H 1.08002 * 120.14692 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.72382 * 179.97438 * 22 21 20 37 37 H 1.08004 * 119.72375 * 179.89562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2587 1.0681 0.0000 4 6 3.5560 0.7130 0.0006 5 6 4.7099 1.6226 0.0002 6 7 4.5233 2.9092 -0.0002 7 7 5.6236 3.7765 -0.0011 8 6 5.4134 5.2263 -0.0021 9 1 4.4806 5.4586 0.5118 10 6 5.3399 5.7299 -1.4450 11 6 6.5592 5.9005 0.7076 12 1 7.5577 5.4972 0.6253 13 6 6.3328 7.0322 1.4619 14 7 7.3446 7.6759 2.0016 15 14 4.5889 7.6511 1.7173 16 1 3.9715 6.9335 2.8614 17 1 4.6175 9.1078 2.0039 18 1 3.7911 7.4038 0.4894 19 6 3.6000 -0.6832 -0.0043 20 6 4.6446 -1.6201 -0.0107 21 6 4.3458 -2.9489 -0.0149 22 6 3.0007 -3.3607 -0.0123 23 6 2.0059 -2.4510 0.0019 24 7 2.2884 -1.1105 0.0005 25 1 -0.3633 -0.0003 -1.0277 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3632 0.8902 0.5134 28 1 5.7130 1.2225 0.0003 29 1 6.5245 3.4170 -0.0010 30 1 4.5687 5.1790 -1.9833 31 1 6.3027 5.5774 -1.9326 32 1 5.0959 6.7923 -1.4470 33 1 7.1853 8.4724 2.5320 34 1 5.6734 -1.2916 -0.0118 35 1 5.1379 -3.6830 -0.0201 36 1 2.7633 -4.4142 -0.0160 37 1 0.9778 -2.7818 0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771884845.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:04 Heat of formation + Delta-G solvation = 124.646538 kcal Electronic energy + Delta-G solvation = -19515.377971 eV Core-core repulsion = 16487.799079 eV Total energy + Delta-G solvation = -3027.578892 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.65077 -37.55132 -36.39008 -34.30719 -33.18855 -31.61859 -31.46685 -30.11578 -28.29966 -26.18834 -25.19069 -23.84253 -22.98198 -21.30707 -20.15151 -19.83860 -17.63106 -16.86507 -16.74684 -16.02622 -15.84219 -15.51468 -15.18994 -14.59876 -13.98875 -13.58690 -13.26594 -13.16915 -12.75841 -12.58270 -12.45995 -12.31004 -12.19499 -11.80405 -11.76545 -11.13026 -11.02262 -10.75612 -10.60157 -10.18705 -10.07032 -9.84963 -9.46861 -9.30264 -9.10477 -8.64120 -7.78762 -6.56127 -6.19082 -4.21832 0.66737 1.10071 2.52098 2.52422 3.20850 3.29839 3.37326 3.42944 3.76196 3.87204 4.28170 4.33475 4.36369 4.59956 4.68440 4.88443 4.91705 5.17735 5.22822 5.31271 5.37608 5.55074 5.69505 5.74141 5.92859 6.04751 6.11980 6.35975 6.49382 6.54774 6.67376 6.76688 6.81713 7.10184 7.21426 7.34432 7.59754 8.02772 8.17715 8.44331 8.83398 9.34545 9.43112 10.92952 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027869 B = 0.003727 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.466773 B = 7511.313836 C = 8069.881888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.164 3.836 3 N -0.423 5.423 4 C 0.098 3.902 5 C 0.024 3.976 6 N -0.178 5.178 7 N -0.621 5.621 8 C 0.265 3.735 9 H 0.044 0.956 10 C -0.150 4.150 11 C -0.526 4.526 12 H 0.077 0.923 13 C 0.080 3.920 14 N -0.890 5.890 15 Si 0.877 3.123 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.261 1.261 19 C -0.001 4.001 20 C -0.054 4.054 21 C -0.142 4.142 22 C -0.134 4.134 23 C 0.045 3.955 24 N -0.368 5.368 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.370 0.630 30 H 0.028 0.972 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.268 0.732 34 H 0.145 0.855 35 H 0.134 0.866 36 H 0.144 0.856 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.879 -23.029 -4.511 25.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.092 4.092 3 N -0.139 5.139 4 C -0.039 4.039 5 C -0.185 4.185 6 N 0.008 4.992 7 N -0.358 5.358 8 C 0.162 3.838 9 H 0.062 0.938 10 C -0.210 4.210 11 C -0.565 4.565 12 H 0.095 0.905 13 C -0.124 4.124 14 N -0.527 5.527 15 Si 0.704 3.296 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.185 1.185 19 C -0.111 4.111 20 C -0.074 4.074 21 C -0.164 4.164 22 C -0.155 4.155 23 C -0.076 4.076 24 N -0.041 5.041 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.111 0.889 28 H 0.128 0.872 29 H 0.207 0.793 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.163 0.837 35 H 0.152 0.848 36 H 0.161 0.839 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.992 -21.067 -4.393 24.636 hybrid contribution 0.615 -1.169 0.252 1.344 sum -11.377 -22.236 -4.141 25.318 Atomic orbital electron populations 1.20135 0.84544 1.03948 1.03359 1.23399 0.95656 0.79174 1.10962 1.70262 1.01843 1.26391 1.15421 1.18761 0.90287 0.87414 1.07411 1.22245 0.93588 0.89776 1.12876 1.74212 1.18505 1.03409 1.03059 1.49206 1.01472 1.04535 1.80603 1.18897 0.97702 0.74391 0.92797 0.93817 1.22334 0.99560 0.99973 0.99134 1.21050 0.94551 1.10558 1.30380 0.90506 1.24941 0.97231 0.96066 0.94160 1.69886 1.30809 1.18606 1.33414 0.86850 0.85144 0.77827 0.79782 1.19814 1.21234 1.18498 1.19243 0.84079 0.94358 1.13394 1.20476 0.98041 0.91541 0.97374 1.21000 0.96360 0.95708 1.03284 1.20760 0.92425 0.99532 1.02772 1.21548 1.00999 0.80632 1.04372 1.42843 1.07842 1.05934 1.47503 0.90335 0.91165 0.88866 0.87155 0.79275 0.95294 0.93561 0.93022 0.92260 0.83728 0.84826 0.83869 0.82259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.56 10.33 36.01 0.37 -0.19 16 2 C 0.16 2.30 7.95 -154.64 -1.23 1.07 16 3 N -0.42 -7.71 11.20 -6.77 -0.08 -7.78 16 4 C 0.10 1.72 7.06 -82.63 -0.58 1.14 16 5 C 0.02 0.45 10.98 -14.81 -0.16 0.29 16 6 N -0.18 -3.93 11.47 32.07 0.37 -3.56 16 7 N -0.62 -14.11 6.10 -5.88 -0.04 -14.15 16 8 C 0.26 6.63 2.89 -69.08 -0.20 6.43 16 9 H 0.04 1.16 5.29 -51.93 -0.27 0.89 16 10 C -0.15 -3.42 9.50 37.16 0.35 -3.07 16 11 C -0.53 -14.74 9.08 -34.44 -0.31 -15.06 16 12 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 13 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 14 N -0.89 -26.82 13.96 55.43 0.77 -26.05 16 15 Si 0.88 21.93 26.99 -169.99 -4.59 17.34 16 16 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.26 -6.31 6.82 56.52 0.39 -5.93 16 19 C 0.00 -0.01 6.77 -83.79 -0.57 -0.58 16 20 C -0.05 -0.59 10.09 -39.53 -0.40 -0.99 16 21 C -0.14 -1.20 10.08 -39.40 -0.40 -1.60 16 22 C -0.13 -0.99 9.97 -39.88 -0.40 -1.39 16 23 C 0.04 0.39 10.80 -16.46 -0.18 0.21 16 24 N -0.37 -4.67 2.96 -57.79 -0.17 -4.84 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.45 8.02 -51.93 -0.42 0.03 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.11 1.72 8.03 -52.49 -0.42 1.30 16 29 H 0.37 7.77 8.60 -182.59 -1.57 6.20 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.16 0.81 7.96 -52.48 -0.42 0.39 16 LS Contribution 323.83 15.07 4.88 4.88 Total: -1.00 -34.54 323.83 -8.71 -43.25 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.06 Total: 2.45 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -3.80 Total: -11.54 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.86 Total: -56.38 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.59 Total: 17.34 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.54 -8.71 -43.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884845.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.892 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds