Wall clock time and date at job start Mon Mar 30 2020 04:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30602 * 125.13485 * 2 1 4 4 C 1.34503 * 109.82910 * 179.97438 * 3 2 1 5 5 C 1.46934 * 126.44627 * 179.97438 * 4 3 2 6 6 N 1.29998 * 119.99453 * 0.02562 * 5 4 3 7 7 N 1.40107 * 119.99474 * 180.02562 * 6 5 4 8 8 C 1.46494 * 119.99690 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.47332 * 30.00496 * 8 7 6 10 10 C 1.52998 * 109.47126 * 269.99972 * 8 7 6 11 11 C 1.50704 * 109.46846 * 150.00156 * 8 7 6 12 12 H 1.07997 * 120.00269 * 34.99941 * 11 8 7 13 13 C 1.37876 * 119.99752 * 215.00200 * 11 8 7 14 14 N 1.31512 * 119.99797 * 184.91466 * 13 11 8 15 15 Si 1.86802 * 120.00389 * 4.91686 * 13 11 8 16 16 H 1.48496 * 109.47292 * 84.83270 * 15 13 11 17 17 H 1.48494 * 109.47356 * 204.83716 * 15 13 11 18 18 H 1.48500 * 109.46883 * 324.83503 * 15 13 11 19 19 C 1.39691 * 107.10913 * 0.22702 * 4 3 2 20 20 C 1.40331 * 133.69222 * 179.74933 * 19 4 3 21 21 C 1.36196 * 119.21238 * 180.02562 * 20 19 4 22 22 C 1.40664 * 119.69683 * 359.97438 * 21 20 19 23 23 C 1.34807 * 120.53907 * 359.62605 * 22 21 20 24 24 N 1.35788 * 125.13032 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.46746 * 90.01920 * 1 2 3 26 26 H 1.08995 * 109.47147 * 210.02336 * 1 2 3 27 27 H 1.08998 * 109.46683 * 330.02531 * 1 2 3 28 28 H 1.07997 * 120.00268 * 180.02562 * 5 4 3 29 29 H 0.96998 * 119.99927 * 359.97438 * 7 6 5 30 30 H 1.08998 * 109.47042 * 55.03122 * 10 8 7 31 31 H 1.08998 * 109.47545 * 295.02883 * 10 8 7 32 32 H 1.09005 * 109.46882 * 175.02956 * 10 8 7 33 33 H 0.97006 * 119.99713 * 179.97438 * 14 13 11 34 34 H 1.07992 * 120.39780 * 0.04877 * 20 19 4 35 35 H 1.08002 * 120.14692 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.72382 * 179.97438 * 22 21 20 37 37 H 1.08004 * 119.72375 * 179.89562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2587 1.0681 0.0000 4 6 3.5560 0.7130 0.0006 5 6 4.7099 1.6226 0.0002 6 7 4.5233 2.9092 -0.0002 7 7 5.6236 3.7765 -0.0011 8 6 5.4134 5.2263 -0.0021 9 1 4.4806 5.4586 0.5118 10 6 5.3399 5.7299 -1.4450 11 6 6.5592 5.9005 0.7076 12 1 7.5577 5.4972 0.6253 13 6 6.3328 7.0322 1.4619 14 7 7.3446 7.6759 2.0016 15 14 4.5889 7.6511 1.7173 16 1 3.9715 6.9335 2.8614 17 1 4.6175 9.1078 2.0039 18 1 3.7911 7.4038 0.4894 19 6 3.6000 -0.6832 -0.0043 20 6 4.6446 -1.6201 -0.0107 21 6 4.3458 -2.9489 -0.0149 22 6 3.0007 -3.3607 -0.0123 23 6 2.0059 -2.4510 0.0019 24 7 2.2884 -1.1105 0.0005 25 1 -0.3633 -0.0003 -1.0277 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3632 0.8902 0.5134 28 1 5.7130 1.2225 0.0003 29 1 6.5245 3.4170 -0.0010 30 1 4.5687 5.1790 -1.9833 31 1 6.3027 5.5774 -1.9326 32 1 5.0959 6.7923 -1.4470 33 1 7.1853 8.4724 2.5320 34 1 5.6734 -1.2916 -0.0118 35 1 5.1379 -3.6830 -0.0201 36 1 2.7633 -4.4142 -0.0160 37 1 0.9778 -2.7818 0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771884845.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:04 Heat of formation + Delta-G solvation = 101.604251 kcal Electronic energy + Delta-G solvation = -19516.377160 eV Core-core repulsion = 16487.799079 eV Total energy + Delta-G solvation = -3028.578080 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.62409 -38.49269 -37.95850 -35.88300 -34.54793 -33.46221 -32.37155 -30.97314 -29.76714 -27.43061 -27.13159 -24.69693 -24.17600 -22.24400 -22.00811 -21.12058 -19.35214 -18.16815 -17.71151 -17.05406 -16.99876 -16.95109 -16.41664 -15.76940 -15.31587 -15.02963 -14.58571 -14.44832 -14.13427 -14.02108 -13.94753 -13.33855 -13.12705 -13.00642 -12.96900 -12.75189 -12.47302 -12.44306 -12.12972 -11.85438 -11.48800 -11.31711 -11.17568 -10.90649 -10.79929 -10.21518 -9.09918 -8.39757 -7.86598 -6.46222 -0.15388 0.22671 1.26032 1.31233 1.33639 1.44966 1.63342 2.19774 2.28002 2.35613 2.69132 3.02251 3.38017 3.59597 3.81709 3.90953 4.04082 4.21528 4.28439 4.42808 4.53175 4.66588 4.72148 4.81619 4.83157 4.87762 4.98151 5.03289 5.05936 5.22305 5.33361 5.38569 5.46222 5.53531 5.65446 5.73724 6.13643 6.32136 6.52278 6.63869 6.98755 7.22212 7.80378 8.75992 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027869 B = 0.003727 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.466773 B = 7511.313836 C = 8069.881888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.150 3.850 3 N -0.472 5.472 4 C 0.016 3.984 5 C 0.068 3.932 6 N -0.238 5.238 7 N -0.642 5.642 8 C 0.274 3.726 9 H 0.027 0.973 10 C -0.142 4.142 11 C -0.528 4.528 12 H 0.046 0.954 13 C 0.030 3.970 14 N -0.934 5.934 15 Si 0.936 3.064 16 H -0.276 1.276 17 H -0.273 1.273 18 H -0.250 1.250 19 C 0.023 3.977 20 C -0.102 4.102 21 C -0.104 4.104 22 C -0.131 4.131 23 C 0.039 3.961 24 N -0.369 5.369 25 H 0.092 0.908 26 H 0.104 0.896 27 H 0.083 0.917 28 H 0.133 0.867 29 H 0.372 0.628 30 H 0.037 0.963 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.271 0.729 34 H 0.155 0.845 35 H 0.170 0.830 36 H 0.190 0.810 37 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.100 -27.645 -4.989 30.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.106 4.106 3 N -0.188 5.188 4 C -0.118 4.118 5 C -0.143 4.143 6 N -0.049 5.049 7 N -0.380 5.380 8 C 0.170 3.830 9 H 0.045 0.955 10 C -0.201 4.201 11 C -0.567 4.567 12 H 0.064 0.936 13 C -0.171 4.171 14 N -0.572 5.572 15 Si 0.760 3.240 16 H -0.202 1.202 17 H -0.199 1.199 18 H -0.174 1.174 19 C -0.090 4.090 20 C -0.121 4.121 21 C -0.125 4.125 22 C -0.151 4.151 23 C -0.081 4.081 24 N -0.041 5.041 25 H 0.110 0.890 26 H 0.123 0.877 27 H 0.102 0.898 28 H 0.150 0.850 29 H 0.209 0.791 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.173 0.827 35 H 0.188 0.812 36 H 0.207 0.793 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -14.217 -25.671 -4.884 29.749 hybrid contribution 1.255 -0.393 0.380 1.369 sum -12.962 -26.064 -4.504 29.456 Atomic orbital electron populations 1.20305 0.81481 1.05199 1.04623 1.24075 0.97153 0.78811 1.10590 1.70095 1.02783 1.29251 1.16655 1.18742 0.90041 0.88874 1.14123 1.22827 0.95471 0.89180 1.06794 1.74241 1.17909 1.04657 1.08086 1.48623 1.01813 1.03790 1.83735 1.18589 0.95285 0.75903 0.93273 0.95514 1.22209 1.00059 0.99913 0.97956 1.21238 0.94336 1.10707 1.30462 0.93582 1.25687 1.00943 0.96348 0.94073 1.69994 1.32854 1.19521 1.34862 0.85921 0.80566 0.77703 0.79837 1.20185 1.19871 1.17355 1.19519 0.85787 0.93603 1.10080 1.20750 0.97922 0.92324 1.01110 1.21623 0.98203 0.95106 0.97574 1.21416 0.91442 1.01625 1.00653 1.22496 1.03810 0.78757 1.02999 1.43116 1.06987 1.07387 1.46561 0.88957 0.87706 0.89779 0.85019 0.79085 0.94391 0.93212 0.92963 0.91938 0.82716 0.81247 0.79279 0.78184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.33 71.24 0.74 -0.20 16 2 C 0.15 4.06 7.95 137.86 1.10 5.15 16 3 N -0.47 -17.65 11.20 -175.34 -1.96 -19.62 16 4 C 0.02 0.58 7.06 41.36 0.29 0.87 16 5 C 0.07 2.62 10.98 87.24 0.96 3.58 16 6 N -0.24 -11.06 11.47 -52.46 -0.60 -11.66 16 7 N -0.64 -30.74 6.10 -172.53 -1.05 -31.79 16 8 C 0.27 14.25 2.89 44.25 0.13 14.38 16 9 H 0.03 1.47 5.29 -2.39 -0.01 1.46 16 10 C -0.14 -6.61 9.50 71.98 0.68 -5.93 16 11 C -0.53 -31.00 9.08 25.60 0.23 -30.76 16 12 H 0.05 2.91 8.06 -2.91 -0.02 2.88 16 13 C 0.03 1.75 5.47 84.65 0.46 2.22 16 14 N -0.93 -58.20 13.96 21.45 0.30 -57.90 16 15 Si 0.94 46.46 26.99 68.60 1.85 48.31 16 16 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 17 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 18 H -0.25 -11.86 6.82 99.48 0.68 -11.18 16 19 C 0.02 0.63 6.77 39.04 0.26 0.90 16 20 C -0.10 -1.94 10.09 22.30 0.22 -1.71 16 21 C -0.10 -1.19 10.08 22.39 0.23 -0.96 16 22 C -0.13 -1.10 9.97 22.07 0.22 -0.88 16 23 C 0.04 0.47 10.80 83.10 0.90 1.37 16 24 N -0.37 -8.38 2.96 -336.75 -1.00 -9.38 16 25 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.10 0.90 8.02 -2.39 -0.02 0.88 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.13 4.23 8.03 -2.91 -0.02 4.21 16 29 H 0.37 16.64 8.60 -213.32 -1.83 14.80 16 30 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.05 2.36 8.14 -2.38 -0.02 2.34 16 33 H 0.27 15.76 8.31 -92.70 -0.77 14.98 16 34 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 36 H 0.19 -0.03 8.06 -2.91 -0.02 -0.05 16 37 H 0.20 0.70 7.96 -2.91 -0.02 0.68 16 Total: -1.00 -81.60 323.83 3.18 -78.42 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -0.78 Total: 15.58 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: 6.42 Total: -11.97 kcal Atomic # 7 Polarization: -126.03 SS G_CDS: -4.32 Total: -130.35 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.85 Total: 48.31 kcal Total: -81.60 3.18 -78.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884845.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.028 kcal (2) G-P(sol) polarization free energy of solvation -81.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds