Wall clock time and date at job start Mon Mar 30 2020 05:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46934 * 2 1 4 4 C 1.50703 * 109.47122 * 119.99590 * 2 1 3 5 5 H 1.08002 * 119.99685 * 119.99733 * 4 2 1 6 6 C 1.37877 * 120.00216 * 300.00546 * 4 2 1 7 7 N 1.31516 * 120.00069 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99806 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46845 * 90.00621 * 8 6 4 10 10 H 1.48503 * 109.47399 * 210.00111 * 8 6 4 11 11 H 1.48498 * 109.47295 * 330.00717 * 8 6 4 12 12 O 1.45195 * 109.47531 * 239.99635 * 2 1 3 13 13 C 1.34231 * 116.99712 * 90.00079 * 12 2 1 14 14 O 1.20827 * 120.00418 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00042 * 180.02562 * 13 12 2 16 16 C 1.52999 * 109.57632 * 59.73991 * 15 13 12 17 17 C 1.53262 * 109.57306 * 299.35924 * 15 13 12 18 18 O 1.43096 * 108.94481 * 185.66664 * 17 15 13 19 19 C 1.42966 * 113.76727 * 57.96904 * 18 17 15 20 20 C 1.52998 * 109.47015 * 181.20733 * 19 18 17 21 21 C 1.52998 * 109.47295 * 61.20607 * 19 18 17 22 22 O 1.42969 * 109.47165 * 301.20309 * 19 18 17 23 23 C 1.43101 * 113.76763 * 58.79814 * 22 19 18 24 24 H 1.08996 * 109.47365 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47451 * 300.00317 * 1 2 3 26 26 H 1.09001 * 109.46962 * 60.00003 * 1 2 3 27 27 H 0.97000 * 119.99667 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47079 * 60.00680 * 16 15 13 29 29 H 1.09001 * 109.47177 * 180.02562 * 16 15 13 30 30 H 1.08997 * 109.47421 * 300.00221 * 16 15 13 31 31 H 1.08997 * 109.56103 * 305.50324 * 17 15 13 32 32 H 1.08998 * 109.55841 * 65.83057 * 17 15 13 33 33 H 1.09004 * 109.47191 * 179.97438 * 20 19 18 34 34 H 1.08998 * 109.47252 * 299.99911 * 20 19 18 35 35 H 1.09001 * 109.47258 * 59.99782 * 20 19 18 36 36 H 1.08999 * 109.47238 * 299.99859 * 21 19 18 37 37 H 1.08998 * 109.46940 * 60.00109 * 21 19 18 38 38 H 1.09004 * 109.47074 * 179.97438 * 21 19 18 39 39 H 1.08994 * 109.55904 * 182.18639 * 23 22 19 40 40 H 1.09003 * 109.64545 * 61.91718 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8022 0.8743 2.6993 10 1 0.9769 1.9955 3.9070 11 1 0.8488 2.1772 1.4922 12 8 2.0141 -0.6845 -1.1854 13 6 2.2172 0.0640 -2.2810 14 8 1.9974 1.2517 -2.2506 15 6 2.7184 -0.5772 -3.5494 16 6 1.7274 -1.6487 -4.0084 17 6 4.0881 -1.2161 -3.2952 18 8 4.6105 -1.7039 -4.5349 19 6 4.7420 -0.6966 -5.5408 20 6 5.2775 -1.3277 -6.8276 21 6 5.7142 0.3819 -5.0588 22 8 3.4644 -0.1073 -5.7950 23 6 2.8643 0.4887 -4.6408 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.9031 -0.5278 4.4376 28 1 0.7562 -1.1898 -4.1937 29 1 2.0917 -2.1116 -4.9255 30 1 1.6284 -2.4082 -3.2330 31 1 4.7673 -0.4709 -2.8811 32 1 3.9803 -2.0436 -2.5939 33 1 5.3773 -0.5598 -7.5948 34 1 6.2515 -1.7770 -6.6339 35 1 4.5848 -2.0961 -7.1710 36 1 5.3327 0.8316 -4.1421 37 1 6.6882 -0.0674 -4.8651 38 1 5.8148 1.1497 -5.8260 39 1 1.8813 0.8806 -4.9018 40 1 3.4955 1.2995 -4.2769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775246972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:51 Heat of formation + Delta-G solvation = -200.132407 kcal Electronic energy + Delta-G solvation = -22649.996957 eV Core-core repulsion = 19236.440171 eV Total energy + Delta-G solvation = -3413.556786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.33460 -40.95893 -37.92943 -36.84300 -35.95757 -35.24259 -32.76028 -32.19736 -29.09671 -27.45682 -27.39626 -27.27257 -25.27992 -23.22860 -21.94024 -20.23824 -19.04748 -18.94923 -18.31292 -18.05411 -17.29524 -16.90549 -16.61419 -16.42754 -16.14957 -15.22738 -14.82616 -14.67267 -14.43137 -14.34138 -14.15518 -13.67653 -13.61771 -13.49550 -13.26883 -13.19620 -13.15108 -13.00571 -12.88466 -12.68889 -12.29420 -12.26316 -12.10060 -11.77802 -11.71814 -11.35306 -11.25025 -11.09344 -10.85826 -10.64134 -8.46203 -6.55417 1.05391 1.22584 1.29929 1.38973 1.66098 2.17831 2.43355 2.58213 2.86520 3.20859 3.40395 3.58946 3.66158 3.75157 3.87106 4.15345 4.19634 4.34368 4.37264 4.47435 4.50529 4.55823 4.58208 4.67580 4.69795 4.73778 4.77480 4.83316 4.85044 5.05334 5.14055 5.16144 5.24227 5.30107 5.52815 5.71153 6.06853 6.09315 6.48700 6.73288 7.09110 8.69609 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.035358 B = 0.004774 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.703805 B = 5864.122103 C = 6038.565380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.192 3.808 3 H 0.032 0.968 4 C -0.539 4.539 5 H 0.049 0.951 6 C 0.033 3.967 7 N -0.929 5.929 8 Si 0.939 3.061 9 H -0.251 1.251 10 H -0.283 1.283 11 H -0.258 1.258 12 O -0.343 6.343 13 C 0.467 3.533 14 O -0.538 6.538 15 C -0.117 4.117 16 C -0.125 4.125 17 C 0.073 3.927 18 O -0.379 6.379 19 C 0.245 3.755 20 C -0.123 4.123 21 C -0.207 4.207 22 O -0.379 6.379 23 C 0.083 3.917 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.275 0.725 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.433 1.288 -20.074 20.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.138 3.862 3 H 0.050 0.950 4 C -0.577 4.577 5 H 0.067 0.933 6 C -0.168 4.168 7 N -0.567 5.567 8 Si 0.764 3.236 9 H -0.176 1.176 10 H -0.210 1.210 11 H -0.182 1.182 12 O -0.259 6.259 13 C 0.311 3.689 14 O -0.428 6.428 15 C -0.119 4.119 16 C -0.182 4.182 17 C -0.004 4.004 18 O -0.300 6.300 19 C 0.169 3.831 20 C -0.180 4.180 21 C -0.265 4.265 22 O -0.299 6.299 23 C 0.006 3.994 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.130 0.870 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.131 0.869 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.339 1.414 -20.041 20.367 hybrid contribution -0.414 0.939 1.302 1.658 sum 2.925 2.353 -18.739 19.112 Atomic orbital electron populations 1.22418 0.96180 1.02763 1.00805 1.20689 0.92164 0.93082 0.80299 0.95036 1.20918 1.33416 1.14057 0.89279 0.93299 1.25533 0.96826 0.99756 0.94642 1.69954 1.46102 1.41820 0.98794 0.86008 0.79958 0.79661 0.77994 1.17614 1.21002 1.18207 1.86507 1.75750 1.42931 1.20687 1.23727 0.73917 0.85441 0.85838 1.90587 1.49766 1.17643 1.84837 1.21788 0.99882 0.99746 0.90439 1.21692 0.97029 0.96533 1.02960 1.22583 0.90183 1.00621 0.87001 1.88179 1.83332 1.36594 1.21848 1.23347 0.83314 0.86072 0.90409 1.21665 1.02000 1.01954 0.92361 1.22869 1.00810 1.00068 1.02722 1.88161 1.34998 1.74294 1.32492 1.22460 1.00467 0.92103 0.84383 0.91021 0.92548 0.92344 0.91505 0.91334 0.89282 0.91288 0.92105 0.87010 0.88592 0.88836 0.91072 0.93123 0.89138 0.88840 0.86929 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.11 9.03 71.98 0.65 -6.46 16 2 C 0.19 9.48 2.15 29.85 0.06 9.55 16 3 H 0.03 1.65 6.21 -2.39 -0.01 1.64 16 4 C -0.54 -31.04 9.48 25.60 0.24 -30.79 16 5 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 6 C 0.03 1.85 5.45 84.65 0.46 2.31 16 7 N -0.93 -56.10 13.96 21.45 0.30 -55.80 16 8 Si 0.94 43.44 24.37 68.60 1.67 45.11 16 9 H -0.25 -10.72 6.87 99.48 0.68 -10.04 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.26 -11.64 6.53 99.48 0.65 -10.99 16 12 O -0.34 -15.23 9.71 -51.43 -0.50 -15.73 16 13 C 0.47 17.87 6.54 71.24 0.47 18.33 16 14 O -0.54 -22.66 15.14 21.96 0.33 -22.33 16 15 C -0.12 -3.43 0.73 -52.75 -0.04 -3.47 16 16 C -0.13 -3.24 8.23 71.98 0.59 -2.64 16 17 C 0.07 2.06 5.22 72.07 0.38 2.44 16 18 O -0.38 -9.67 9.89 -126.22 -1.25 -10.92 16 19 C 0.24 5.23 1.50 30.59 0.05 5.27 16 20 C -0.12 -1.85 9.21 71.98 0.66 -1.18 16 21 C -0.21 -3.90 8.11 71.98 0.58 -3.32 16 22 O -0.38 -9.11 9.89 -126.22 -1.25 -10.36 16 23 C 0.08 2.17 4.63 72.07 0.33 2.50 16 24 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 25 H 0.06 2.43 3.27 -2.39 -0.01 2.43 16 26 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.09 2.11 7.49 -2.39 -0.02 2.09 16 30 H 0.07 1.87 8.11 -2.39 -0.02 1.85 16 31 H 0.06 1.72 6.53 -2.39 -0.02 1.71 16 32 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.05 1.12 5.11 -2.39 -0.01 1.11 16 37 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.06 1.74 6.34 -2.39 -0.02 1.72 16 Total: -1.00 -66.02 314.58 4.70 -61.32 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.95 Total: 16.18 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 4.44 Total: -7.46 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.30 Total: -55.80 kcal Atomic # 8 Polarization: -56.68 SS G_CDS: -2.66 Total: -59.34 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.67 Total: 45.11 kcal Total: -66.02 4.70 -61.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775246972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.810 kcal (2) G-P(sol) polarization free energy of solvation -66.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds