Wall clock time and date at job start Mon Mar 30 2020 05:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 O 1.45199 * 109.47039 * 295.00131 * 3 2 1 14 14 C 1.34233 * 117.00343 * 90.00377 * 13 3 2 15 15 O 1.20825 * 119.99677 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00210 * 179.97438 * 14 13 3 17 17 O 1.42905 * 109.47110 * 179.97438 * 16 14 13 18 18 C 1.42895 * 114.00056 * 180.02562 * 17 16 14 19 19 C 1.53180 * 109.54674 * 269.56234 * 18 17 16 20 20 C 1.53088 * 109.16557 * 183.15386 * 19 18 17 21 21 O 1.42908 * 109.41669 * 57.60392 * 20 19 18 22 22 C 1.42905 * 114.09668 * 298.84625 * 21 20 19 23 23 C 1.53090 * 109.41580 * 61.15622 * 22 21 20 24 24 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 25 25 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 26 26 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 28 28 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 29 29 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 30 30 H 1.08990 * 109.47304 * 299.99978 * 16 14 13 31 31 H 1.08999 * 109.46899 * 60.00161 * 16 14 13 32 32 H 1.09003 * 109.54212 * 29.82643 * 18 17 16 33 33 H 1.08999 * 109.51944 * 303.05752 * 19 18 17 34 34 H 1.09002 * 109.52387 * 63.23973 * 19 18 17 35 35 H 1.09001 * 109.47943 * 297.62570 * 20 19 18 36 36 H 1.09000 * 109.48322 * 177.59064 * 20 19 18 37 37 H 1.09003 * 109.47962 * 301.16871 * 22 21 20 38 38 H 1.09003 * 109.48789 * 181.14626 * 22 21 20 39 39 H 1.08999 * 109.52184 * 182.48556 * 23 22 21 40 40 H 1.08997 * 109.52698 * 62.29770 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.4486 2.1066 2.0771 11 1 6.4366 -0.3171 2.1526 12 1 6.6108 0.8288 0.0225 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7255 -1.2560 15 8 -0.2193 2.7370 -0.2655 16 6 0.0073 3.4226 -2.5084 17 8 -1.2711 4.0171 -2.2756 18 6 -1.8060 4.7069 -3.4070 19 6 -1.3620 6.1725 -3.3706 20 6 -2.0033 6.9212 -4.5419 21 8 -3.4250 6.8000 -4.4619 22 6 -3.9011 5.4547 -4.5387 23 6 -3.3361 4.6472 -3.3673 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8899 29 1 3.8292 -0.0558 2.9526 30 1 0.7243 4.1969 -2.7809 31 1 -0.0713 2.6985 -3.3193 32 1 -1.4465 4.2384 -4.3232 33 1 -1.6789 6.6258 -2.4313 34 1 -0.2766 6.2265 -3.4542 35 1 -1.6544 6.4931 -5.4816 36 1 -1.7251 7.9741 -4.4964 37 1 -3.5770 5.0075 -5.4785 38 1 -4.9901 5.4511 -4.4910 39 1 -3.6623 3.6104 -3.4486 40 1 -3.6928 5.0697 -2.4279 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787089309.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:22 Heat of formation + Delta-G solvation = -211.538918 kcal Electronic energy + Delta-G solvation = -21480.929061 eV Core-core repulsion = 18066.877652 eV Total energy + Delta-G solvation = -3414.051409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.45958 -40.52828 -38.60010 -37.44202 -35.53003 -33.62805 -33.33706 -32.10287 -29.98812 -28.81445 -25.42736 -25.04785 -24.55569 -22.75546 -21.54509 -21.24723 -18.97296 -18.72834 -17.78454 -17.55155 -17.47880 -16.96801 -16.84837 -16.26228 -16.02381 -15.66732 -15.05958 -14.82084 -14.57245 -14.39641 -14.05279 -13.68771 -13.37419 -13.27278 -13.23963 -13.12413 -12.81539 -12.58292 -12.44884 -12.25587 -12.13826 -11.94057 -11.76731 -11.48963 -11.37638 -11.20382 -10.83909 -10.69835 -10.60558 -10.53552 -8.28271 -6.45604 1.31163 1.40964 1.43933 1.52871 1.61629 2.36956 2.87870 3.00105 3.02575 3.71597 3.75623 3.88188 3.97623 4.06143 4.11470 4.18802 4.27900 4.34842 4.37610 4.40575 4.53067 4.54911 4.68000 4.77054 4.81067 4.82943 5.04806 5.05948 5.12091 5.18552 5.19253 5.35420 5.50252 5.64983 5.95800 6.04318 6.10411 6.24106 6.60302 6.98179 7.26089 8.78699 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.036165 B = 0.003540 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.038543 B = 7907.584880 C = 8437.827260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 C 0.225 3.775 4 H 0.004 0.996 5 C -0.551 4.551 6 H 0.069 0.931 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.983 3.017 10 H -0.273 1.273 11 H -0.276 1.276 12 H -0.261 1.261 13 O -0.360 6.360 14 C 0.442 3.558 15 O -0.535 6.535 16 C 0.079 3.921 17 O -0.388 6.388 18 C 0.080 3.920 19 C -0.181 4.181 20 C 0.065 3.935 21 O -0.404 6.404 22 C 0.067 3.933 23 C -0.154 4.154 24 H 0.031 0.969 25 H 0.037 0.963 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.271 0.729 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.494 8.265 -16.405 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 C 0.172 3.828 4 H 0.022 0.978 5 C -0.588 4.588 6 H 0.087 0.913 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.806 3.194 10 H -0.199 1.199 11 H -0.201 1.201 12 H -0.185 1.185 13 O -0.277 6.277 14 C 0.285 3.715 15 O -0.425 6.425 16 C 0.003 3.997 17 O -0.308 6.308 18 C 0.023 3.977 19 C -0.219 4.219 20 C -0.011 4.011 21 O -0.324 6.324 22 C -0.010 4.010 23 C -0.192 4.192 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.132 0.868 31 H 0.139 0.861 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.126 0.874 37 H 0.092 0.908 38 H 0.130 0.870 39 H 0.106 0.894 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.884 8.291 -15.719 20.336 hybrid contribution 1.013 -0.349 0.802 1.339 sum -8.871 7.943 -14.917 19.086 Atomic orbital electron populations 1.21712 0.96379 1.00613 0.99984 1.21872 0.94336 0.98022 1.02534 1.20405 0.94644 0.89290 0.78446 0.97822 1.21342 0.90334 1.40190 1.06941 0.91298 1.25841 1.04384 0.93822 0.94331 1.70025 1.37536 1.38008 1.09742 0.85178 0.77490 0.77945 0.78773 1.19886 1.20103 1.18488 1.86425 1.35405 1.63115 1.42750 1.24019 0.79900 0.76761 0.90791 1.90620 1.55839 1.58559 1.37450 1.21859 0.87407 0.98741 0.91737 1.88021 1.32721 1.71554 1.38478 1.22461 0.94525 0.91871 0.88803 1.22766 1.02470 0.95869 1.00778 1.22677 0.79931 1.01911 0.96616 1.87920 1.22429 1.27591 1.94417 1.22701 1.00426 0.81398 0.96431 1.22325 0.93471 1.02568 1.00809 0.94969 0.94430 0.91830 0.93126 0.89564 0.92021 0.86799 0.86118 0.88902 0.92221 0.89393 0.90821 0.87422 0.90803 0.87000 0.89395 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.81 8.57 71.98 0.62 -5.19 16 2 C -0.13 -6.57 5.49 30.60 0.17 -6.40 16 3 C 0.23 12.37 2.25 29.85 0.07 12.44 16 4 H 0.00 0.25 7.16 -2.39 -0.02 0.23 16 5 C -0.55 -31.18 8.90 25.60 0.23 -30.95 16 6 H 0.07 3.79 7.81 -2.92 -0.02 3.77 16 7 C 0.02 0.88 5.29 84.66 0.45 1.33 16 8 N -0.92 -52.65 11.31 21.45 0.24 -52.41 16 9 Si 0.98 42.65 29.54 68.60 2.03 44.67 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 12 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 13 O -0.36 -17.11 9.81 -51.45 -0.50 -17.61 16 14 C 0.44 18.69 6.49 71.24 0.46 19.15 16 15 O -0.53 -26.77 13.64 28.40 0.39 -26.39 16 16 C 0.08 2.24 6.35 71.24 0.45 2.69 16 17 O -0.39 -11.57 9.53 -129.90 -1.24 -12.81 16 18 C 0.08 1.61 2.70 30.71 0.08 1.69 16 19 C -0.18 -3.32 5.76 30.68 0.18 -3.14 16 20 C 0.07 0.93 6.84 72.01 0.49 1.43 16 21 O -0.40 -7.45 10.77 -148.98 -1.60 -9.06 16 22 C 0.07 0.94 6.84 72.01 0.49 1.44 16 23 C -0.15 -2.87 5.79 30.68 0.18 -2.70 16 24 H 0.03 1.55 7.80 -2.39 -0.02 1.53 16 25 H 0.04 1.61 6.06 -2.39 -0.01 1.59 16 26 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.09 4.78 5.96 -2.39 -0.01 4.76 16 29 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.11 2.58 7.99 -2.39 -0.02 2.56 16 31 H 0.12 2.57 8.09 -2.39 -0.02 2.55 16 32 H 0.09 1.34 7.79 -2.39 -0.02 1.32 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.09 1.41 8.00 -2.39 -0.02 1.39 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -71.34 325.40 4.19 -67.16 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 1.01 Total: 14.66 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 3.86 Total: -8.22 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.24 Total: -52.41 kcal Atomic # 8 Polarization: -62.90 SS G_CDS: -2.96 Total: -65.86 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -71.34 4.19 -67.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089309.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.380 kcal (2) G-P(sol) polarization free energy of solvation -71.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds