Wall clock time and date at job start Mon Mar 30 2020 05:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46943 * 2 1 4 4 H 1.08998 * 109.47568 * 54.99803 * 3 2 1 5 5 C 1.50701 * 109.46870 * 174.99772 * 3 2 1 6 6 H 1.07998 * 120.00340 * 120.00160 * 5 3 2 7 7 C 1.37880 * 120.00225 * 299.99896 * 5 3 2 8 8 N 1.31518 * 119.99576 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00152 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47181 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47020 * 120.00032 * 9 7 5 12 12 H 1.48500 * 109.46830 * 240.00001 * 9 7 5 13 13 O 1.45202 * 109.47180 * 294.99768 * 3 2 1 14 14 C 1.34223 * 117.00131 * 90.00348 * 13 3 2 15 15 O 1.20826 * 119.99989 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00009 * 179.97438 * 14 13 3 17 17 O 1.42902 * 109.47205 * 179.97438 * 16 14 13 18 18 C 1.42898 * 114.00186 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47319 * 180.02562 * 18 17 16 20 20 H 1.09004 * 110.33324 * 305.70237 * 19 18 17 21 21 C 1.54476 * 110.37423 * 183.45398 * 19 18 17 22 22 C 1.54509 * 104.06327 * 217.18884 * 21 19 18 23 23 C 1.54486 * 104.06437 * 0.02562 * 22 21 19 24 24 O 1.44426 * 110.37206 * 67.95288 * 19 18 17 25 25 H 1.09003 * 109.47381 * 300.00576 * 1 2 3 26 26 H 1.09002 * 109.46776 * 60.00382 * 1 2 3 27 27 H 1.08996 * 109.47148 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46992 * 239.99774 * 2 1 3 29 29 H 1.09002 * 109.46776 * 119.99618 * 2 1 3 30 30 H 0.96998 * 119.99815 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47017 * 60.00101 * 16 14 13 32 32 H 1.08999 * 109.47472 * 299.99778 * 16 14 13 33 33 H 1.09002 * 109.47259 * 300.00293 * 18 17 16 34 34 H 1.09001 * 109.47074 * 60.00315 * 18 17 16 35 35 H 1.08997 * 110.51048 * 335.82995 * 21 19 18 36 36 H 1.08997 * 110.51482 * 98.55004 * 21 19 18 37 37 H 1.09003 * 110.51397 * 118.64015 * 22 21 19 38 38 H 1.09002 * 110.51784 * 241.35495 * 22 21 19 39 39 H 1.08994 * 110.37115 * 142.80925 * 23 22 21 40 40 H 1.09003 * 110.36832 * 265.03673 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 3.4061 0.3366 2.1729 9 14 6.0050 0.8799 1.3813 10 1 6.5988 1.5440 0.1932 11 1 6.3999 1.6157 2.6093 12 1 6.4960 -0.5191 1.4629 13 8 1.6559 2.0916 -1.2407 14 6 0.4728 2.7254 -1.2561 15 8 -0.2192 2.7370 -0.2657 16 6 0.0076 3.4225 -2.5085 17 8 -1.2708 4.0171 -2.2759 18 6 -1.8051 4.7079 -3.4069 19 6 -3.1680 5.3015 -3.0450 20 1 -3.8278 4.5258 -2.6562 21 6 -3.8040 5.9796 -4.2787 22 6 -4.5108 7.2256 -3.6996 23 6 -4.2177 7.1532 -2.1845 24 8 -3.0134 6.3619 -2.0768 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.8292 -0.0619 2.9496 31 1 -0.0710 2.6984 -3.3195 32 1 0.7246 4.1969 -2.7810 33 1 -1.1257 5.5093 -3.6974 34 1 -1.9208 4.0109 -4.2370 35 1 -3.0341 6.2743 -4.9918 36 1 -4.5277 5.3144 -4.7495 37 1 -4.0903 8.1362 -4.1264 38 1 -5.5839 7.1763 -3.8841 39 1 -4.0535 8.1526 -1.7817 40 1 -5.0400 6.6645 -1.6619 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787089936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:32 Heat of formation + Delta-G solvation = -186.356915 kcal Electronic energy + Delta-G solvation = -21198.747922 eV Core-core repulsion = 17785.788487 eV Total energy + Delta-G solvation = -3412.959436 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.79396 -39.46696 -37.50486 -35.54893 -33.47780 -32.40172 -31.39351 -31.01043 -28.31914 -26.96346 -25.26995 -23.15895 -22.19807 -21.34823 -20.84200 -19.41301 -17.33584 -16.99378 -16.77017 -16.17541 -16.07936 -15.81911 -15.53413 -15.16903 -14.52616 -14.41033 -13.96847 -13.37618 -12.88632 -12.80745 -12.49259 -12.06942 -11.93650 -11.75317 -11.52040 -11.42638 -11.38735 -11.22289 -11.11780 -10.94279 -10.91059 -10.61377 -10.25309 -9.91629 -9.75250 -9.70932 -9.48923 -9.30053 -8.76900 -8.43298 -6.16352 -4.23388 2.98764 3.05827 3.25175 3.32353 3.37970 3.67203 4.09381 4.29280 4.36630 4.57939 4.64882 4.91374 5.01814 5.04935 5.15433 5.18756 5.26555 5.29135 5.38233 5.40371 5.50475 5.58521 5.67724 5.72217 5.78288 6.27151 6.34114 6.49875 6.65440 6.90939 6.99308 7.08260 7.21031 7.29590 7.64613 7.76941 7.99376 8.18341 8.68862 8.93022 9.41700 10.90529 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.037133 B = 0.003265 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.860226 B = 8573.690422 C = 8769.090872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.520 4.520 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.356 6.356 14 C 0.451 3.549 15 O -0.495 6.495 16 C 0.069 3.931 17 O -0.358 6.358 18 C 0.067 3.933 19 C 0.077 3.923 20 H 0.079 0.921 21 C -0.148 4.148 22 C -0.155 4.155 23 C 0.041 3.959 24 O -0.359 6.359 25 H 0.053 0.947 26 H 0.031 0.969 27 H 0.033 0.967 28 H 0.042 0.958 29 H 0.109 0.891 30 H 0.266 0.734 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.320 9.630 -13.802 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.558 4.558 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.739 3.261 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.274 6.274 14 C 0.292 3.708 15 O -0.382 6.382 16 C -0.009 4.009 17 O -0.277 6.277 18 C -0.009 4.009 19 C 0.019 3.981 20 H 0.097 0.903 21 C -0.186 4.186 22 C -0.192 4.192 23 C -0.037 4.037 24 O -0.277 6.277 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.127 0.873 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.384 9.529 -12.968 20.931 hybrid contribution 0.770 -0.094 -0.157 0.791 sum -12.614 9.435 -13.125 20.504 Atomic orbital electron populations 1.21863 0.98297 0.98979 1.00879 1.22023 0.92685 0.99297 1.03357 1.20711 0.95009 0.88749 0.78556 0.93406 1.21081 0.89617 1.38893 1.06255 0.91254 1.24898 0.99271 0.94799 0.95060 1.69905 1.35289 1.37844 1.09483 0.86219 0.83861 0.77842 0.78210 1.19487 1.20760 1.20736 1.86437 1.33779 1.62683 1.44458 1.22719 0.81322 0.77704 0.89099 1.90639 1.55118 1.57131 1.35350 1.21721 0.86536 0.97775 0.94844 1.88035 1.32840 1.71171 1.35652 1.22601 0.94082 0.95493 0.88769 1.22994 0.95747 0.90757 0.88602 0.90286 1.22921 1.00427 0.97264 0.97985 1.22940 1.01227 0.98664 0.96404 1.23431 0.88322 0.96617 0.95281 1.89306 1.38480 1.40794 1.59156 0.92763 0.94942 0.94812 0.93961 0.87300 0.92435 0.89727 0.89525 0.92139 0.91624 0.90303 0.90058 0.90564 0.90449 0.89052 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.57 37.16 0.32 -2.92 16 2 C -0.14 -3.43 5.49 -26.73 -0.15 -3.58 16 3 C 0.22 6.03 2.25 -27.89 -0.06 5.97 16 4 H 0.05 1.45 7.16 -51.93 -0.37 1.08 16 5 C -0.52 -14.73 8.90 -34.44 -0.31 -15.03 16 6 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -25.35 11.29 55.43 0.63 -24.73 16 9 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 O -0.36 -8.62 9.81 -39.24 -0.38 -9.00 16 14 C 0.45 9.87 6.49 36.00 0.23 10.10 16 15 O -0.49 -12.44 13.64 -25.48 -0.35 -12.79 16 16 C 0.07 1.10 6.53 36.00 0.24 1.33 16 17 O -0.36 -5.98 9.88 -57.56 -0.57 -6.55 16 18 C 0.07 0.78 5.54 37.16 0.21 0.98 16 19 C 0.08 0.85 3.57 -25.96 -0.09 0.76 16 20 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 21 C -0.15 -1.09 6.63 -25.16 -0.17 -1.26 16 22 C -0.15 -1.06 7.09 -25.16 -0.18 -1.24 16 23 C 0.04 0.37 7.63 37.94 0.29 0.66 16 24 O -0.36 -4.91 11.35 -35.63 -0.40 -5.32 16 25 H 0.05 1.30 7.80 -51.93 -0.40 0.90 16 26 H 0.03 0.71 6.06 -51.93 -0.31 0.39 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.11 2.98 5.95 -51.93 -0.31 2.67 16 30 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 329.46 15.07 4.96 4.96 Total: -1.00 -33.39 329.46 -7.33 -40.72 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -6.43 Total: -0.86 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 0.23 Total: -2.61 kcal Atomic # 7 Polarization: -25.35 SS G_CDS: 0.63 Total: -24.73 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -1.71 Total: -33.66 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.39 -7.33 -40.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.636 kcal (2) G-P(sol) polarization free energy of solvation -33.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds