Wall clock time and date at job start Mon Mar 30 2020 05:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46943 * 2 1 4 4 H 1.08998 * 109.47568 * 54.99803 * 3 2 1 5 5 C 1.50701 * 109.46870 * 174.99772 * 3 2 1 6 6 H 1.07998 * 120.00340 * 120.00160 * 5 3 2 7 7 C 1.37880 * 120.00225 * 299.99896 * 5 3 2 8 8 N 1.31518 * 119.99576 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00152 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47181 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47020 * 120.00032 * 9 7 5 12 12 H 1.48500 * 109.46830 * 240.00001 * 9 7 5 13 13 O 1.45202 * 109.47180 * 294.99768 * 3 2 1 14 14 C 1.34223 * 117.00131 * 90.00348 * 13 3 2 15 15 O 1.20826 * 119.99989 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00009 * 179.97438 * 14 13 3 17 17 O 1.42902 * 109.47205 * 179.97438 * 16 14 13 18 18 C 1.42898 * 114.00186 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47319 * 180.02562 * 18 17 16 20 20 H 1.09004 * 110.33324 * 305.70237 * 19 18 17 21 21 C 1.54476 * 110.37423 * 183.45398 * 19 18 17 22 22 C 1.54509 * 104.06327 * 217.18884 * 21 19 18 23 23 C 1.54486 * 104.06437 * 0.02562 * 22 21 19 24 24 O 1.44426 * 110.37206 * 67.95288 * 19 18 17 25 25 H 1.09003 * 109.47381 * 300.00576 * 1 2 3 26 26 H 1.09002 * 109.46776 * 60.00382 * 1 2 3 27 27 H 1.08996 * 109.47148 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46992 * 239.99774 * 2 1 3 29 29 H 1.09002 * 109.46776 * 119.99618 * 2 1 3 30 30 H 0.96998 * 119.99815 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47017 * 60.00101 * 16 14 13 32 32 H 1.08999 * 109.47472 * 299.99778 * 16 14 13 33 33 H 1.09002 * 109.47259 * 300.00293 * 18 17 16 34 34 H 1.09001 * 109.47074 * 60.00315 * 18 17 16 35 35 H 1.08997 * 110.51048 * 335.82995 * 21 19 18 36 36 H 1.08997 * 110.51482 * 98.55004 * 21 19 18 37 37 H 1.09003 * 110.51397 * 118.64015 * 22 21 19 38 38 H 1.09002 * 110.51784 * 241.35495 * 22 21 19 39 39 H 1.08994 * 110.37115 * 142.80925 * 23 22 21 40 40 H 1.09003 * 110.36832 * 265.03673 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 3.4061 0.3366 2.1729 9 14 6.0050 0.8799 1.3813 10 1 6.5988 1.5440 0.1932 11 1 6.3999 1.6157 2.6093 12 1 6.4960 -0.5191 1.4629 13 8 1.6559 2.0916 -1.2407 14 6 0.4728 2.7254 -1.2561 15 8 -0.2192 2.7370 -0.2657 16 6 0.0076 3.4225 -2.5085 17 8 -1.2708 4.0171 -2.2759 18 6 -1.8051 4.7079 -3.4069 19 6 -3.1680 5.3015 -3.0450 20 1 -3.8278 4.5258 -2.6562 21 6 -3.8040 5.9796 -4.2787 22 6 -4.5108 7.2256 -3.6996 23 6 -4.2177 7.1532 -2.1845 24 8 -3.0134 6.3619 -2.0768 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.8292 -0.0619 2.9496 31 1 -0.0710 2.6984 -3.3195 32 1 0.7246 4.1969 -2.7810 33 1 -1.1257 5.5093 -3.6974 34 1 -1.9208 4.0109 -4.2370 35 1 -3.0341 6.2743 -4.9918 36 1 -4.5277 5.3144 -4.7495 37 1 -4.0903 8.1362 -4.1264 38 1 -5.5839 7.1763 -3.8841 39 1 -4.0535 8.1526 -1.7817 40 1 -5.0400 6.6645 -1.6619 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787089936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:32 Heat of formation + Delta-G solvation = -207.991323 kcal Electronic energy + Delta-G solvation = -21199.686061 eV Core-core repulsion = 17785.788487 eV Total energy + Delta-G solvation = -3413.897574 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.41131 -40.45139 -38.74146 -37.40981 -35.52164 -33.40087 -33.12520 -31.89653 -29.85647 -28.75334 -26.13853 -25.17155 -22.92815 -22.78455 -21.93882 -21.31615 -18.97575 -18.68391 -17.99447 -17.45322 -17.43280 -17.04375 -16.70535 -16.58706 -16.13694 -15.77309 -14.93331 -14.78003 -14.59849 -14.25732 -13.89360 -13.39286 -13.29433 -13.21436 -13.04943 -12.82394 -12.72694 -12.64507 -12.54309 -12.21771 -12.15202 -12.12469 -11.76574 -11.47616 -11.45787 -11.18897 -10.83243 -10.78566 -10.74441 -10.53447 -8.27721 -6.44995 1.33213 1.41481 1.43113 1.54364 1.64261 2.37643 2.91816 2.97636 3.02451 3.67148 3.88014 3.88395 4.00738 4.12811 4.16318 4.22684 4.26947 4.35940 4.38545 4.43360 4.51054 4.55714 4.57911 4.81574 4.82222 4.88730 4.95708 5.06611 5.09674 5.18532 5.20364 5.36314 5.51081 5.65913 5.88342 5.97016 6.05382 6.11302 6.61240 6.99940 7.26746 8.79513 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.037133 B = 0.003265 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.860226 B = 8573.690422 C = 8769.090872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.224 3.776 4 H 0.003 0.997 5 C -0.549 4.549 6 H 0.068 0.932 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.984 3.016 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.271 1.271 13 O -0.360 6.360 14 C 0.441 3.559 15 O -0.535 6.535 16 C 0.081 3.919 17 O -0.397 6.397 18 C 0.060 3.940 19 C 0.066 3.934 20 H 0.066 0.934 21 C -0.139 4.139 22 C -0.148 4.148 23 C 0.029 3.971 24 O -0.403 6.403 25 H 0.030 0.970 26 H 0.036 0.964 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.270 0.730 31 H 0.125 0.875 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.206 9.916 -16.277 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.021 0.979 5 C -0.586 4.586 6 H 0.087 0.913 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.807 3.193 10 H -0.186 1.186 11 H -0.203 1.203 12 H -0.196 1.196 13 O -0.277 6.277 14 C 0.285 3.715 15 O -0.425 6.425 16 C 0.004 3.996 17 O -0.317 6.317 18 C -0.015 4.015 19 C 0.008 3.992 20 H 0.084 0.916 21 C -0.177 4.177 22 C -0.186 4.186 23 C -0.047 4.047 24 O -0.323 6.323 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.143 0.857 32 H 0.132 0.868 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.293 9.826 -15.474 22.643 hybrid contribution 0.636 -0.121 0.635 0.907 sum -12.657 9.705 -14.839 21.785 Atomic orbital electron populations 1.21712 0.96411 1.00606 0.99964 1.21866 0.94305 0.97944 1.02567 1.20419 0.94684 0.89337 0.78458 0.97937 1.21368 0.90303 1.39963 1.07011 0.91340 1.25857 1.04451 0.93861 0.94308 1.70033 1.37470 1.37946 1.09915 0.85114 0.77427 0.78346 0.78380 1.18596 1.20313 1.19576 1.86423 1.35389 1.63131 1.42725 1.24049 0.79902 0.76742 0.90851 1.90621 1.55903 1.58532 1.37488 1.21805 0.87128 0.98920 0.91748 1.87993 1.33005 1.71949 1.38720 1.22960 0.94188 0.96203 0.88160 1.23208 0.95684 0.90364 0.89907 0.91574 1.22920 1.00981 0.97316 0.96436 1.22943 1.02516 0.98921 0.94191 1.23657 0.87134 0.96411 0.97508 1.89257 1.40496 1.41953 1.60549 0.95049 0.94453 0.91764 0.93065 0.89530 0.92025 0.85746 0.86848 0.91123 0.88213 0.89030 0.88079 0.89658 0.88513 0.88485 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.94 8.57 71.98 0.62 -5.32 16 2 C -0.13 -6.64 5.49 30.59 0.17 -6.48 16 3 C 0.22 12.57 2.25 29.85 0.07 12.64 16 4 H 0.00 0.18 7.16 -2.39 -0.02 0.16 16 5 C -0.55 -31.64 8.90 25.60 0.23 -31.41 16 6 H 0.07 3.85 7.81 -2.91 -0.02 3.82 16 7 C 0.01 0.83 5.29 84.65 0.45 1.28 16 8 N -0.92 -53.37 11.29 21.45 0.24 -53.13 16 9 Si 0.98 43.33 29.54 68.60 2.03 45.36 16 10 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 13 O -0.36 -17.60 9.81 -51.35 -0.50 -18.10 16 14 C 0.44 19.47 6.49 71.24 0.46 19.94 16 15 O -0.54 -27.95 13.64 28.40 0.39 -27.57 16 16 C 0.08 2.42 6.53 71.24 0.47 2.89 16 17 O -0.40 -12.88 9.88 -127.63 -1.26 -14.14 16 18 C 0.06 1.27 5.54 71.98 0.40 1.67 16 19 C 0.07 1.39 3.57 31.09 0.11 1.50 16 20 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 21 C -0.14 -1.66 6.63 31.61 0.21 -1.45 16 22 C -0.15 -1.69 7.09 31.61 0.22 -1.46 16 23 C 0.03 0.53 7.63 72.49 0.55 1.08 16 24 O -0.40 -11.07 11.35 -148.60 -1.69 -12.76 16 25 H 0.03 1.54 7.80 -2.39 -0.02 1.52 16 26 H 0.04 1.64 6.06 -2.39 -0.01 1.62 16 27 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.09 4.87 5.95 -2.39 -0.01 4.85 16 30 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 31 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.11 2.80 8.14 -2.39 -0.02 2.79 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 0.87 7.87 -2.39 -0.02 0.86 16 36 H 0.10 0.81 8.14 -2.39 -0.02 0.80 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -75.76 329.46 4.17 -71.59 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 1.01 Total: 13.87 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 3.95 Total: -5.12 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.24 Total: -53.13 kcal Atomic # 8 Polarization: -69.51 SS G_CDS: -3.06 Total: -72.57 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -75.76 4.17 -71.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.397 kcal (2) G-P(sol) polarization free energy of solvation -75.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds