Wall clock time and date at job start Mon Mar 30 2020 05:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47332 * 2 1 4 4 C 1.50703 * 109.46905 * 240.00163 * 2 1 3 5 5 H 1.08001 * 119.99478 * 236.86638 * 4 2 1 6 6 C 1.37870 * 120.00262 * 56.86195 * 4 2 1 7 7 N 1.31513 * 120.00106 * 5.81915 * 6 4 2 8 8 Si 1.86804 * 120.00013 * 185.82184 * 6 4 2 9 9 H 1.48497 * 109.47327 * 85.02515 * 8 6 4 10 10 H 1.48507 * 109.46801 * 205.02403 * 8 6 4 11 11 H 1.48498 * 109.47116 * 325.02225 * 8 6 4 12 12 C 1.52998 * 109.47228 * 120.00100 * 2 1 3 13 13 O 1.45206 * 109.47034 * 299.99734 * 12 2 1 14 14 C 1.34224 * 117.00151 * 180.02562 * 13 12 2 15 15 O 1.20833 * 119.99900 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00091 * 180.02562 * 14 13 12 17 17 C 1.53004 * 109.47065 * 179.97438 * 16 14 13 18 18 O 1.42970 * 109.47183 * 174.99808 * 17 16 14 19 19 C 1.43088 * 113.77064 * 178.79410 * 18 17 16 20 20 C 1.53258 * 108.94019 * 302.02909 * 19 18 17 21 21 C 1.53258 * 108.84667 * 54.52699 * 20 19 18 22 22 O 1.42963 * 109.46952 * 294.99790 * 17 16 14 23 23 H 1.09004 * 109.46791 * 293.83199 * 1 2 3 24 24 H 1.09000 * 109.46770 * 53.82271 * 1 2 3 25 25 H 1.08989 * 109.47237 * 173.82830 * 1 2 3 26 26 H 1.08999 * 109.46938 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.46680 * 299.99915 * 3 2 1 28 28 H 1.08992 * 109.47466 * 59.99706 * 3 2 1 29 29 H 0.96998 * 120.00237 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.47136 * 180.02562 * 12 2 1 31 31 H 1.08993 * 109.47053 * 59.99986 * 12 2 1 32 32 H 1.08999 * 109.47485 * 60.00144 * 16 14 13 33 33 H 1.08999 * 109.47010 * 299.99809 * 16 14 13 34 34 H 1.08998 * 109.46949 * 54.99779 * 17 16 14 35 35 H 1.09000 * 109.56064 * 61.86897 * 19 18 17 36 36 H 1.09000 * 109.55732 * 182.08170 * 19 18 17 37 37 H 1.09004 * 109.57147 * 174.33196 * 20 19 18 38 38 H 1.09000 * 109.58042 * 294.58456 * 20 19 18 39 39 H 1.09002 * 109.55919 * 65.31268 * 21 20 19 40 40 H 1.09003 * 109.56109 * 185.63410 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6943 -1.5581 -1.1322 6 6 1.6467 -0.2783 -2.4817 7 7 0.9349 0.8204 -2.6075 8 14 2.1352 -1.2535 -3.9983 9 1 1.1495 -2.3403 -4.2267 10 1 2.1614 -0.3527 -5.1787 11 1 3.4832 -1.8424 -3.7951 12 6 2.0400 -0.7213 1.2492 13 8 1.5561 -0.0367 2.4348 14 6 1.9171 -0.5464 3.6228 15 8 2.6150 -1.5317 3.6706 16 6 1.4523 0.1101 4.8971 17 6 1.9995 -0.6635 6.0984 18 8 1.6567 0.0240 7.3042 19 6 2.1026 -0.6376 8.4921 20 6 1.5047 -2.0483 8.5299 21 6 1.8616 -2.7724 7.2271 22 8 1.4311 -1.9751 6.1196 23 1 -0.3633 0.4153 0.9401 24 1 -0.3633 0.6066 -0.8295 25 1 -0.3633 -1.0216 -0.1105 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6768 1.9564 0.8899 29 1 0.6639 1.1246 -3.4878 30 1 3.1301 -0.7208 1.2494 31 1 1.6767 -1.7488 1.2492 32 1 0.3628 0.1086 4.9302 33 1 1.8154 1.1373 4.9300 34 1 3.0839 -0.7387 6.0188 35 1 3.1906 -0.7024 8.4872 36 1 1.7743 -0.0768 9.3672 37 1 1.9165 -2.5968 9.3771 38 1 0.4211 -1.9833 8.6288 39 1 2.9405 -2.9180 7.1744 40 1 1.3594 -3.7394 7.1977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793225979.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:20 Heat of formation + Delta-G solvation = -192.000753 kcal Electronic energy + Delta-G solvation = -21637.141687 eV Core-core repulsion = 18223.937516 eV Total energy + Delta-G solvation = -3413.204171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.40078 -39.56144 -36.60515 -35.82863 -34.79573 -33.42902 -31.30614 -30.42569 -26.21808 -25.88238 -25.59386 -25.14961 -23.78698 -21.44224 -20.43717 -18.81576 -17.88597 -17.05809 -16.65937 -16.32796 -15.80408 -15.63408 -15.44318 -14.97362 -14.91961 -14.47403 -13.51848 -13.37419 -13.14920 -13.00184 -12.65367 -12.15739 -11.79747 -11.76444 -11.44238 -11.33324 -11.32887 -11.15154 -10.92370 -10.68836 -10.38626 -10.25208 -10.20546 -10.03516 -9.87526 -9.83028 -9.37536 -9.28593 -8.73865 -8.34845 -6.00725 -4.10992 2.65313 2.82846 3.29871 3.36103 3.39181 3.46819 3.78831 4.40804 4.43339 4.45141 4.62811 4.77251 4.86879 5.05898 5.12597 5.25936 5.32152 5.34739 5.48960 5.55492 5.61461 5.75638 6.11965 6.14794 6.49608 6.61320 6.78551 6.97005 7.01780 7.10681 7.15962 7.18712 7.43425 7.65222 7.72755 8.06150 8.17231 8.28318 8.41464 8.88681 9.54062 11.01186 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.046114 B = 0.003487 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.048171 B = 8028.190978 C = 8327.257038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.069 3.931 3 C -0.129 4.129 4 C -0.514 4.514 5 H 0.057 0.943 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.086 3.914 13 O -0.348 6.348 14 C 0.461 3.539 15 O -0.511 6.511 16 C -0.103 4.103 17 C 0.262 3.738 18 O -0.393 6.393 19 C 0.059 3.941 20 C -0.194 4.194 21 C 0.058 3.942 22 O -0.378 6.378 23 H 0.018 0.982 24 H 0.080 0.920 25 H 0.025 0.975 26 H 0.022 0.978 27 H 0.084 0.916 28 H 0.016 0.984 29 H 0.261 0.739 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.115 -1.741 20.085 20.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.069 3.931 3 C -0.187 4.187 4 C -0.552 4.552 5 H 0.075 0.925 6 C -0.133 4.133 7 N -0.519 5.519 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 C 0.013 3.987 13 O -0.264 6.264 14 C 0.303 3.697 15 O -0.401 6.401 16 C -0.141 4.141 17 C 0.167 3.833 18 O -0.314 6.314 19 C -0.017 4.017 20 C -0.232 4.232 21 C -0.019 4.019 22 O -0.298 6.298 23 H 0.037 0.963 24 H 0.098 0.902 25 H 0.044 0.956 26 H 0.041 0.959 27 H 0.103 0.897 28 H 0.035 0.965 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.137 0.863 33 H 0.144 0.856 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.015 -1.809 19.741 19.850 hybrid contribution 0.649 -0.897 -0.583 1.251 sum 1.663 -2.706 19.158 19.420 Atomic orbital electron populations 1.21743 0.97262 0.99826 0.99729 1.18252 0.93437 0.93074 0.88326 1.21789 0.98061 0.98187 1.00646 1.20930 1.29694 1.14687 0.89900 0.92509 1.24850 0.94926 0.94762 0.98718 1.69852 1.37552 1.21182 1.23352 0.86570 0.78992 0.79925 0.82271 1.20549 1.21231 1.19974 1.23662 0.98104 0.95871 0.81061 1.86501 1.69214 1.55841 1.14797 1.22946 0.77933 0.82564 0.86225 1.90645 1.35808 1.25366 1.88248 1.21051 1.05188 1.00458 0.87387 1.22911 0.95982 0.79869 0.84576 1.88057 1.80246 1.48603 1.14486 1.22642 0.98223 0.92938 0.87917 1.22815 1.03323 0.97598 0.99434 1.22624 0.99635 0.94728 0.84898 1.88202 1.70264 1.24884 1.46440 0.96339 0.90158 0.95564 0.95869 0.89736 0.96460 0.92909 0.92577 0.92455 0.86255 0.85623 0.91573 0.92730 0.88170 0.89747 0.89924 0.92711 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.06 37.16 0.30 -2.82 16 2 C 0.07 1.72 0.58 -155.66 -0.09 1.63 16 3 C -0.13 -3.13 8.14 37.16 0.30 -2.83 16 4 C -0.51 -13.89 8.01 -34.44 -0.28 -14.17 16 5 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 6 C 0.07 1.87 5.13 -17.82 -0.09 1.78 16 7 N -0.88 -24.14 9.46 55.43 0.52 -23.62 16 8 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.09 1.93 4.26 37.16 0.16 2.09 16 13 O -0.35 -7.03 8.77 -39.24 -0.34 -7.38 16 14 C 0.46 8.28 7.84 36.00 0.28 8.56 16 15 O -0.51 -10.41 15.17 -24.05 -0.36 -10.77 16 16 C -0.10 -1.39 5.89 -27.88 -0.16 -1.55 16 17 C 0.26 3.45 2.80 37.16 0.10 3.56 16 18 O -0.39 -4.65 10.54 -59.03 -0.62 -5.27 16 19 C 0.06 0.50 6.96 37.29 0.26 0.76 16 20 C -0.19 -1.53 6.35 -26.46 -0.17 -1.70 16 21 C 0.06 0.59 6.96 37.29 0.26 0.85 16 22 O -0.38 -5.45 9.77 -64.76 -0.63 -6.08 16 23 H 0.02 0.40 7.50 -51.93 -0.39 0.01 16 24 H 0.08 2.10 6.25 -51.93 -0.32 1.77 16 25 H 0.03 0.62 8.14 -51.94 -0.42 0.20 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.08 2.22 6.11 -51.93 -0.32 1.90 16 28 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 29 H 0.26 6.84 8.31 -40.82 -0.34 6.51 16 30 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 31 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 32 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.13 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.07 0.87 7.95 -51.93 -0.41 0.46 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 324.79 15.07 4.89 4.89 Total: -1.00 -30.46 324.79 -7.15 -37.61 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -6.46 Total: -1.50 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 0.88 Total: -3.84 kcal Atomic # 7 Polarization: -24.14 SS G_CDS: 0.52 Total: -23.62 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -1.96 Total: -29.50 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.46 -7.15 -37.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793225979.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.392 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds