Wall clock time and date at job start Mon Mar 30 2020 05:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47332 * 2 1 4 4 C 1.50703 * 109.46905 * 240.00163 * 2 1 3 5 5 H 1.08001 * 119.99478 * 236.86638 * 4 2 1 6 6 C 1.37870 * 120.00262 * 56.86195 * 4 2 1 7 7 N 1.31513 * 120.00106 * 5.81915 * 6 4 2 8 8 Si 1.86804 * 120.00013 * 185.82184 * 6 4 2 9 9 H 1.48497 * 109.47327 * 85.02515 * 8 6 4 10 10 H 1.48507 * 109.46801 * 205.02403 * 8 6 4 11 11 H 1.48498 * 109.47116 * 325.02225 * 8 6 4 12 12 C 1.52998 * 109.47228 * 120.00100 * 2 1 3 13 13 O 1.45206 * 109.47034 * 299.99734 * 12 2 1 14 14 C 1.34224 * 117.00151 * 180.02562 * 13 12 2 15 15 O 1.20833 * 119.99900 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00091 * 180.02562 * 14 13 12 17 17 C 1.53004 * 109.47065 * 179.97438 * 16 14 13 18 18 O 1.42970 * 109.47183 * 174.99808 * 17 16 14 19 19 C 1.43088 * 113.77064 * 178.79410 * 18 17 16 20 20 C 1.53258 * 108.94019 * 302.02909 * 19 18 17 21 21 C 1.53258 * 108.84667 * 54.52699 * 20 19 18 22 22 O 1.42963 * 109.46952 * 294.99790 * 17 16 14 23 23 H 1.09004 * 109.46791 * 293.83199 * 1 2 3 24 24 H 1.09000 * 109.46770 * 53.82271 * 1 2 3 25 25 H 1.08989 * 109.47237 * 173.82830 * 1 2 3 26 26 H 1.08999 * 109.46938 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.46680 * 299.99915 * 3 2 1 28 28 H 1.08992 * 109.47466 * 59.99706 * 3 2 1 29 29 H 0.96998 * 120.00237 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.47136 * 180.02562 * 12 2 1 31 31 H 1.08993 * 109.47053 * 59.99986 * 12 2 1 32 32 H 1.08999 * 109.47485 * 60.00144 * 16 14 13 33 33 H 1.08999 * 109.47010 * 299.99809 * 16 14 13 34 34 H 1.08998 * 109.46949 * 54.99779 * 17 16 14 35 35 H 1.09000 * 109.56064 * 61.86897 * 19 18 17 36 36 H 1.09000 * 109.55732 * 182.08170 * 19 18 17 37 37 H 1.09004 * 109.57147 * 174.33196 * 20 19 18 38 38 H 1.09000 * 109.58042 * 294.58456 * 20 19 18 39 39 H 1.09002 * 109.55919 * 65.31268 * 21 20 19 40 40 H 1.09003 * 109.56109 * 185.63410 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6943 -1.5581 -1.1322 6 6 1.6467 -0.2783 -2.4817 7 7 0.9349 0.8204 -2.6075 8 14 2.1352 -1.2535 -3.9983 9 1 1.1495 -2.3403 -4.2267 10 1 2.1614 -0.3527 -5.1787 11 1 3.4832 -1.8424 -3.7951 12 6 2.0400 -0.7213 1.2492 13 8 1.5561 -0.0367 2.4348 14 6 1.9171 -0.5464 3.6228 15 8 2.6150 -1.5317 3.6706 16 6 1.4523 0.1101 4.8971 17 6 1.9995 -0.6635 6.0984 18 8 1.6567 0.0240 7.3042 19 6 2.1026 -0.6376 8.4921 20 6 1.5047 -2.0483 8.5299 21 6 1.8616 -2.7724 7.2271 22 8 1.4311 -1.9751 6.1196 23 1 -0.3633 0.4153 0.9401 24 1 -0.3633 0.6066 -0.8295 25 1 -0.3633 -1.0216 -0.1105 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6768 1.9564 0.8899 29 1 0.6639 1.1246 -3.4878 30 1 3.1301 -0.7208 1.2494 31 1 1.6767 -1.7488 1.2492 32 1 0.3628 0.1086 4.9302 33 1 1.8154 1.1373 4.9300 34 1 3.0839 -0.7387 6.0188 35 1 3.1906 -0.7024 8.4872 36 1 1.7743 -0.0768 9.3672 37 1 1.9165 -2.5968 9.3771 38 1 0.4211 -1.9833 8.6288 39 1 2.9405 -2.9180 7.1744 40 1 1.3594 -3.7394 7.1977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793225979.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:19 Heat of formation + Delta-G solvation = -209.276611 kcal Electronic energy + Delta-G solvation = -21637.890824 eV Core-core repulsion = 18223.937516 eV Total energy + Delta-G solvation = -3413.953308 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.63802 -40.72929 -38.31593 -36.75076 -36.56866 -34.30247 -33.27311 -31.47368 -27.64018 -27.56290 -27.13281 -26.93652 -24.98480 -22.23840 -21.80733 -20.70650 -19.05254 -18.25145 -17.87830 -17.69306 -17.37538 -17.09091 -16.79084 -16.29460 -15.76422 -15.72240 -14.95175 -14.87981 -14.49200 -14.32045 -13.96972 -13.56214 -13.50200 -13.14308 -13.08922 -12.78097 -12.62818 -12.42700 -12.31423 -12.16650 -12.14142 -12.10225 -11.71301 -11.62395 -11.26278 -11.17766 -11.01540 -10.73508 -10.71025 -10.39156 -8.05043 -6.21949 1.22717 1.43620 1.44813 1.52143 1.60058 2.44141 2.58395 2.76138 3.18753 3.58840 3.74173 3.78549 3.83541 4.06824 4.22010 4.27294 4.29891 4.38048 4.43907 4.46387 4.62084 4.66049 4.82337 4.83784 4.87575 5.06252 5.11621 5.20539 5.23920 5.37540 5.60661 5.65033 5.67622 5.80896 6.07361 6.10334 6.18411 6.37075 6.75925 6.84378 7.45670 8.95290 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.046114 B = 0.003487 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.048171 B = 8028.190978 C = 8327.257038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.060 3.940 3 C -0.118 4.118 4 C -0.537 4.537 5 H 0.049 0.951 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.952 3.048 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.273 1.273 12 C 0.098 3.902 13 O -0.352 6.352 14 C 0.460 3.540 15 O -0.538 6.538 16 C -0.095 4.095 17 C 0.263 3.737 18 O -0.402 6.402 19 C 0.048 3.952 20 C -0.185 4.185 21 C 0.045 3.955 22 O -0.410 6.410 23 H 0.035 0.965 24 H 0.060 0.940 25 H 0.019 0.981 26 H 0.020 0.980 27 H 0.063 0.937 28 H 0.034 0.966 29 H 0.262 0.738 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.131 0.869 33 H 0.154 0.846 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.176 -1.659 21.603 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.060 3.940 3 C -0.176 4.176 4 C -0.575 4.575 5 H 0.067 0.933 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.778 3.222 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.198 1.198 12 C 0.025 3.975 13 O -0.268 6.268 14 C 0.304 3.696 15 O -0.428 6.428 16 C -0.132 4.132 17 C 0.168 3.832 18 O -0.324 6.324 19 C -0.028 4.028 20 C -0.223 4.223 21 C -0.031 4.031 22 O -0.331 6.331 23 H 0.054 0.946 24 H 0.079 0.921 25 H 0.038 0.962 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.149 0.851 33 H 0.172 0.828 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.142 0.858 37 H 0.131 0.869 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.074 -1.724 21.286 21.382 hybrid contribution 0.638 -0.942 -0.949 1.482 sum 1.712 -2.666 20.336 20.582 Atomic orbital electron populations 1.21600 0.97080 0.99055 0.99738 1.18279 0.93608 0.93374 0.88769 1.21638 0.97795 0.97809 1.00370 1.21202 1.30101 1.14914 0.91304 0.93289 1.25505 0.94962 0.95552 1.01089 1.69959 1.37884 1.21918 1.23917 0.85674 0.78628 0.78705 0.79220 1.20248 1.20679 1.19804 1.23231 0.97537 0.95137 0.81623 1.86489 1.69454 1.55794 1.15042 1.23814 0.77054 0.82208 0.86514 1.90633 1.37076 1.26677 1.88419 1.21153 1.05825 1.01387 0.84875 1.22781 0.95573 0.79710 0.85117 1.88027 1.80531 1.48923 1.14880 1.22982 0.99087 0.93412 0.87275 1.22765 1.03138 0.97362 0.98992 1.22900 0.99978 0.95031 0.85172 1.88155 1.70895 1.25683 1.48367 0.94637 0.92087 0.96226 0.96076 0.91853 0.94716 0.92819 0.93134 0.93437 0.85071 0.82820 0.92050 0.91680 0.85845 0.86855 0.90400 0.92427 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.06 71.98 0.58 -5.12 16 2 C 0.06 2.98 0.58 -52.93 -0.03 2.95 16 3 C -0.12 -5.71 8.14 71.98 0.59 -5.12 16 4 C -0.54 -29.24 8.01 25.60 0.20 -29.03 16 5 H 0.05 2.67 7.75 -2.91 -0.02 2.65 16 6 C 0.03 1.57 5.13 84.65 0.43 2.01 16 7 N -0.90 -49.34 9.46 21.44 0.20 -49.14 16 8 Si 0.95 42.96 29.54 68.60 2.03 44.99 16 9 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 C 0.10 4.43 4.26 71.98 0.31 4.74 16 13 O -0.35 -13.93 8.77 -51.36 -0.45 -14.38 16 14 C 0.46 16.13 7.84 71.23 0.56 16.69 16 15 O -0.54 -21.83 15.17 27.01 0.41 -21.42 16 16 C -0.10 -2.39 5.89 29.85 0.18 -2.22 16 17 C 0.26 6.59 2.80 71.98 0.20 6.79 16 18 O -0.40 -8.67 10.54 -126.22 -1.33 -10.00 16 19 C 0.05 0.68 6.96 72.07 0.50 1.19 16 20 C -0.18 -2.47 6.35 30.77 0.20 -2.28 16 21 C 0.05 0.87 6.96 72.07 0.50 1.37 16 22 O -0.41 -11.48 9.77 -120.75 -1.18 -12.66 16 23 H 0.03 1.55 7.50 -2.38 -0.02 1.53 16 24 H 0.06 3.20 6.25 -2.39 -0.01 3.18 16 25 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 3.32 6.11 -2.38 -0.01 3.31 16 28 H 0.03 1.50 7.68 -2.39 -0.02 1.48 16 29 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 30 H 0.05 2.30 8.13 -2.39 -0.02 2.29 16 31 H 0.05 2.21 8.13 -2.39 -0.02 2.19 16 32 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 33 H 0.15 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.06 1.56 7.95 -2.39 -0.02 1.54 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.11 0.85 8.14 -2.38 -0.02 0.84 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -64.62 324.79 4.90 -59.72 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.01 Total: 10.92 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 4.22 Total: -8.04 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.20 Total: -49.14 kcal Atomic # 8 Polarization: -55.90 SS G_CDS: -2.55 Total: -58.45 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -64.62 4.90 -59.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793225979.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.561 kcal (2) G-P(sol) polarization free energy of solvation -64.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds