Wall clock time and date at job start Mon Mar 30 2020 05:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47381 * 2 1 4 4 H 1.08996 * 109.46959 * 54.99543 * 3 2 1 5 5 C 1.50701 * 109.47556 * 175.00035 * 3 2 1 6 6 H 1.07998 * 119.99768 * 120.00240 * 5 3 2 7 7 C 1.37875 * 119.99714 * 300.00022 * 5 3 2 8 8 N 1.31513 * 120.00308 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99665 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46818 * 90.00021 * 9 7 5 11 11 H 1.48502 * 109.46774 * 210.00007 * 9 7 5 12 12 H 1.48499 * 109.47095 * 329.99952 * 9 7 5 13 13 O 1.45208 * 109.47113 * 295.00105 * 3 2 1 14 14 C 1.34227 * 116.99820 * 89.99740 * 13 3 2 15 15 O 1.20821 * 120.00140 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99538 * 180.02562 * 14 13 3 17 17 O 1.42896 * 109.61859 * 34.24445 * 16 14 13 18 18 C 1.42906 * 114.00136 * 63.69204 * 17 16 14 19 19 C 1.53195 * 109.54094 * 274.02458 * 16 14 13 20 20 C 1.53095 * 109.15383 * 183.16160 * 19 16 14 21 21 O 1.42905 * 109.42518 * 57.60257 * 20 19 16 22 22 C 1.42909 * 114.09624 * 298.84368 * 21 20 19 23 23 C 1.53091 * 109.41831 * 61.15654 * 22 21 20 24 24 H 1.09003 * 109.46944 * 60.00330 * 1 2 3 25 25 H 1.09007 * 109.46835 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47288 * 299.99958 * 1 2 3 27 27 H 1.09000 * 109.47313 * 240.00050 * 2 1 3 28 28 H 1.09000 * 109.47214 * 120.00112 * 2 1 3 29 29 H 0.97002 * 120.00160 * 179.97438 * 8 7 5 30 30 H 1.09006 * 109.46739 * 306.30767 * 18 17 16 31 31 H 1.09001 * 109.47099 * 66.30457 * 18 17 16 32 32 H 1.08991 * 109.47225 * 186.30478 * 18 17 16 33 33 H 1.08996 * 109.53663 * 63.25127 * 19 16 14 34 34 H 1.09000 * 109.52084 * 303.05585 * 19 16 14 35 35 H 1.09005 * 109.47603 * 297.61630 * 20 19 16 36 36 H 1.08996 * 109.48101 * 177.59346 * 20 19 16 37 37 H 1.09001 * 109.47689 * 181.13969 * 22 21 20 38 38 H 1.09004 * 109.47924 * 301.15944 * 22 21 20 39 39 H 1.08991 * 109.52143 * 62.29523 * 23 22 21 40 40 H 1.09001 * 109.51748 * 182.48812 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8801 1.3811 10 1 6.4427 2.1129 2.0836 11 1 6.4391 -0.3110 2.1545 12 1 6.6131 0.8395 0.0269 13 8 1.6559 2.0917 -1.2408 14 6 0.4727 2.7254 -1.2560 15 8 -0.2192 2.7369 -0.2656 16 6 0.0070 3.4216 -2.5088 17 8 0.4540 2.6956 -3.6555 18 6 -0.0952 1.3805 -3.7613 19 6 0.5777 4.8428 -2.5476 20 6 0.0361 5.5680 -3.7823 21 8 -1.3923 5.5755 -3.7406 22 6 -1.9832 4.2744 -3.7504 23 6 -1.5230 3.4971 -2.5144 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0610 2.9499 30 1 0.0881 0.8347 -2.8357 31 1 -1.1689 1.4482 -3.9367 32 1 0.3763 0.8556 -4.5921 33 1 1.6655 4.7974 -2.5997 34 1 0.2773 5.3805 -1.6483 35 1 0.3708 5.0525 -4.6825 36 1 0.4049 6.5936 -3.7923 37 1 -3.0691 4.3682 -3.7373 38 1 -1.6751 3.7420 -4.6503 39 1 -1.8658 4.0077 -1.6145 40 1 -1.9373 2.4893 -2.5428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793279058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:18 Heat of formation + Delta-G solvation = -185.322380 kcal Electronic energy + Delta-G solvation = -23024.258021 eV Core-core repulsion = 19611.343446 eV Total energy + Delta-G solvation = -3412.914575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.74495 -38.89722 -37.05029 -35.89323 -33.52469 -32.49485 -31.40820 -31.24534 -27.49819 -26.91563 -25.58826 -23.67991 -23.23163 -21.61177 -20.00555 -19.38769 -17.60938 -16.88878 -16.58578 -16.07914 -15.86420 -15.57814 -15.38716 -14.82905 -14.62513 -14.22440 -13.74380 -13.07715 -12.93140 -12.87448 -12.71844 -12.43770 -12.19659 -11.61176 -11.52110 -11.44604 -11.32236 -11.21114 -10.99065 -10.84385 -10.71579 -10.59230 -10.30552 -10.07258 -9.81413 -9.77522 -9.46401 -9.13205 -8.83764 -8.48464 -6.21262 -4.28297 2.79404 3.22586 3.27309 3.30664 3.40726 3.71089 3.88226 4.30098 4.55493 4.68319 4.88813 5.10357 5.15980 5.21139 5.32534 5.37376 5.46451 5.52188 5.58095 5.66244 5.72183 5.79026 5.92228 6.01760 6.10475 6.14778 6.22359 6.37912 6.78859 6.87884 7.05293 7.10109 7.10531 7.18045 7.57869 7.68388 7.88682 8.11721 8.57400 8.85115 9.37093 10.85564 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.027359 B = 0.005527 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.171067 B = 5064.648742 C = 5474.412219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.218 3.782 4 H 0.046 0.954 5 C -0.520 4.520 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.341 6.341 14 C 0.434 3.566 15 O -0.510 6.510 16 C 0.129 3.871 17 O -0.358 6.358 18 C 0.021 3.979 19 C -0.141 4.141 20 C 0.068 3.932 21 O -0.383 6.383 22 C 0.069 3.931 23 C -0.173 4.173 24 H 0.029 0.971 25 H 0.034 0.966 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.110 0.890 29 H 0.266 0.734 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.097 0.903 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.212 4.912 -11.335 14.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.166 3.834 4 H 0.063 0.937 5 C -0.558 4.558 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.256 6.256 14 C 0.275 3.725 15 O -0.400 6.400 16 C 0.088 3.912 17 O -0.276 6.276 18 C -0.075 4.075 19 C -0.179 4.179 20 C -0.009 4.009 21 O -0.302 6.302 22 C -0.008 4.008 23 C -0.210 4.210 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.128 0.872 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.325 5.021 -10.962 14.652 hybrid contribution 0.892 -0.693 0.627 1.292 sum -7.433 4.328 -10.335 13.446 Atomic orbital electron populations 1.21899 0.98536 0.99023 1.00596 1.22017 0.92458 0.99420 1.03432 1.20714 0.95173 0.88761 0.78797 0.93663 1.21034 0.89607 1.38939 1.06234 0.91294 1.24885 0.99267 0.94724 0.95041 1.69885 1.35419 1.37882 1.09473 0.86286 0.83861 0.77715 0.78383 1.20380 1.20930 1.19551 1.86570 1.33664 1.61685 1.43705 1.23905 0.81353 0.77370 0.89823 1.90612 1.55683 1.57958 1.35760 1.21417 0.94051 0.92873 0.82897 1.87965 1.69650 1.27282 1.42710 1.22931 0.97753 0.83902 1.02921 1.22216 1.03018 0.91531 1.01108 1.22542 0.80588 1.01077 0.96681 1.87904 1.19846 1.27610 1.94832 1.22501 0.98164 0.83901 0.96242 1.22689 0.93864 1.02869 1.01624 0.95220 0.94694 0.92749 0.93973 0.87246 0.92376 0.92891 0.93970 0.89018 0.88599 0.89024 0.91885 0.88332 0.88527 0.92504 0.88495 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.56 37.16 0.32 -2.76 16 2 C -0.14 -3.33 5.49 -26.73 -0.15 -3.47 16 3 C 0.22 5.77 2.25 -27.88 -0.06 5.71 16 4 H 0.05 1.33 7.16 -51.93 -0.37 0.96 16 5 C -0.52 -14.54 8.90 -34.44 -0.31 -14.84 16 6 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -24.99 11.29 55.43 0.63 -24.36 16 9 Si 0.91 21.00 29.54 -169.99 -5.02 15.97 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 O -0.34 -8.12 9.21 -44.44 -0.41 -8.53 16 14 C 0.43 9.04 4.11 36.01 0.15 9.18 16 15 O -0.51 -11.63 13.19 -18.75 -0.25 -11.88 16 16 C 0.13 2.09 0.68 -91.57 -0.06 2.02 16 17 O -0.36 -5.62 9.10 -49.19 -0.45 -6.07 16 18 C 0.02 0.29 10.12 101.05 1.02 1.31 16 19 C -0.14 -2.02 5.13 -26.58 -0.14 -2.16 16 20 C 0.07 0.80 6.69 37.21 0.25 1.05 16 21 O -0.38 -4.93 10.77 -35.23 -0.38 -5.31 16 22 C 0.07 0.78 6.69 37.20 0.25 1.03 16 23 C -0.17 -2.37 4.14 -26.59 -0.11 -2.48 16 24 H 0.03 0.60 4.69 -51.93 -0.24 0.36 16 25 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 26 H 0.05 1.23 7.79 -51.93 -0.40 0.83 16 27 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.11 2.93 5.95 -51.93 -0.31 2.62 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.05 0.86 5.49 -51.93 -0.29 0.58 16 31 H 0.04 0.48 6.66 -51.93 -0.35 0.13 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 0.73 7.82 -51.93 -0.41 0.32 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.61 7.82 -51.93 -0.41 0.21 16 39 H 0.10 1.42 7.77 -51.93 -0.40 1.02 16 40 H 0.08 1.07 6.49 -51.93 -0.34 0.74 16 LS Contribution 313.23 15.07 4.72 4.72 Total: -1.00 -30.54 313.23 -6.11 -36.64 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.02 Total: 2.58 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 1.07 Total: -3.77 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.63 Total: -24.36 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -1.48 Total: -31.79 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.54 -6.11 -36.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793279058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.678 kcal (2) G-P(sol) polarization free energy of solvation -30.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds