Wall clock time and date at job start Mon Mar 30 2020 05:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47381 * 2 1 4 4 H 1.08996 * 109.46959 * 54.99543 * 3 2 1 5 5 C 1.50701 * 109.47556 * 175.00035 * 3 2 1 6 6 H 1.07998 * 119.99768 * 120.00240 * 5 3 2 7 7 C 1.37875 * 119.99714 * 300.00022 * 5 3 2 8 8 N 1.31513 * 120.00308 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99665 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46818 * 90.00021 * 9 7 5 11 11 H 1.48502 * 109.46774 * 210.00007 * 9 7 5 12 12 H 1.48499 * 109.47095 * 329.99952 * 9 7 5 13 13 O 1.45208 * 109.47113 * 295.00105 * 3 2 1 14 14 C 1.34227 * 116.99820 * 89.99740 * 13 3 2 15 15 O 1.20821 * 120.00140 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99538 * 180.02562 * 14 13 3 17 17 O 1.42896 * 109.61859 * 34.24445 * 16 14 13 18 18 C 1.42906 * 114.00136 * 63.69204 * 17 16 14 19 19 C 1.53195 * 109.54094 * 274.02458 * 16 14 13 20 20 C 1.53095 * 109.15383 * 183.16160 * 19 16 14 21 21 O 1.42905 * 109.42518 * 57.60257 * 20 19 16 22 22 C 1.42909 * 114.09624 * 298.84368 * 21 20 19 23 23 C 1.53091 * 109.41831 * 61.15654 * 22 21 20 24 24 H 1.09003 * 109.46944 * 60.00330 * 1 2 3 25 25 H 1.09007 * 109.46835 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47288 * 299.99958 * 1 2 3 27 27 H 1.09000 * 109.47313 * 240.00050 * 2 1 3 28 28 H 1.09000 * 109.47214 * 120.00112 * 2 1 3 29 29 H 0.97002 * 120.00160 * 179.97438 * 8 7 5 30 30 H 1.09006 * 109.46739 * 306.30767 * 18 17 16 31 31 H 1.09001 * 109.47099 * 66.30457 * 18 17 16 32 32 H 1.08991 * 109.47225 * 186.30478 * 18 17 16 33 33 H 1.08996 * 109.53663 * 63.25127 * 19 16 14 34 34 H 1.09000 * 109.52084 * 303.05585 * 19 16 14 35 35 H 1.09005 * 109.47603 * 297.61630 * 20 19 16 36 36 H 1.08996 * 109.48101 * 177.59346 * 20 19 16 37 37 H 1.09001 * 109.47689 * 181.13969 * 22 21 20 38 38 H 1.09004 * 109.47924 * 301.15944 * 22 21 20 39 39 H 1.08991 * 109.52143 * 62.29523 * 23 22 21 40 40 H 1.09001 * 109.51748 * 182.48812 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8801 1.3811 10 1 6.4427 2.1129 2.0836 11 1 6.4391 -0.3110 2.1545 12 1 6.6131 0.8395 0.0269 13 8 1.6559 2.0917 -1.2408 14 6 0.4727 2.7254 -1.2560 15 8 -0.2192 2.7369 -0.2656 16 6 0.0070 3.4216 -2.5088 17 8 0.4540 2.6956 -3.6555 18 6 -0.0952 1.3805 -3.7613 19 6 0.5777 4.8428 -2.5476 20 6 0.0361 5.5680 -3.7823 21 8 -1.3923 5.5755 -3.7406 22 6 -1.9832 4.2744 -3.7504 23 6 -1.5230 3.4971 -2.5144 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0610 2.9499 30 1 0.0881 0.8347 -2.8357 31 1 -1.1689 1.4482 -3.9367 32 1 0.3763 0.8556 -4.5921 33 1 1.6655 4.7974 -2.5997 34 1 0.2773 5.3805 -1.6483 35 1 0.3708 5.0525 -4.6825 36 1 0.4049 6.5936 -3.7923 37 1 -3.0691 4.3682 -3.7373 38 1 -1.6751 3.7420 -4.6503 39 1 -1.8658 4.0077 -1.6145 40 1 -1.9373 2.4893 -2.5428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793279058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:17 Heat of formation + Delta-G solvation = -204.647852 kcal Electronic energy + Delta-G solvation = -23025.096036 eV Core-core repulsion = 19611.343446 eV Total energy + Delta-G solvation = -3413.752590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.18570 -40.32891 -38.19096 -37.73045 -35.53272 -33.75345 -33.29595 -32.28092 -29.48143 -28.04186 -26.94398 -25.20310 -24.66347 -23.12292 -21.70929 -20.85736 -19.28071 -18.62917 -17.99342 -17.68498 -17.14518 -16.86671 -16.62052 -16.48746 -16.02689 -15.42956 -15.28787 -14.81680 -14.52418 -14.12661 -13.97168 -13.79414 -13.52241 -13.36982 -13.34901 -13.15699 -12.84655 -12.64010 -12.62746 -12.45172 -12.16690 -12.11505 -11.79260 -11.71257 -11.46331 -11.28973 -10.90049 -10.82091 -10.60292 -10.44493 -8.30917 -6.47990 1.13820 1.39159 1.40822 1.52368 1.82944 2.36208 2.52512 2.93481 2.98626 3.38085 3.51257 3.74516 3.86761 4.20081 4.23565 4.27524 4.31374 4.33148 4.36937 4.40876 4.52003 4.53108 4.66122 4.72473 4.74742 4.79227 4.92482 4.95777 5.01736 5.05661 5.16059 5.31102 5.47174 5.61577 5.82304 5.92567 6.06586 6.18014 6.55949 6.90272 7.23489 8.75820 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.027359 B = 0.005527 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.171067 B = 5064.648742 C = 5474.412219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.128 4.128 3 C 0.222 3.778 4 H 0.003 0.997 5 C -0.550 4.550 6 H 0.063 0.937 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.980 3.020 10 H -0.272 1.272 11 H -0.274 1.274 12 H -0.264 1.264 13 O -0.351 6.351 14 C 0.428 3.572 15 O -0.535 6.535 16 C 0.133 3.867 17 O -0.362 6.362 18 C 0.015 3.985 19 C -0.145 4.145 20 C 0.075 3.925 21 O -0.392 6.392 22 C 0.072 3.928 23 C -0.168 4.168 24 H 0.037 0.963 25 H 0.064 0.936 26 H 0.034 0.966 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.271 0.729 30 H 0.023 0.977 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.441 5.146 -13.186 16.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.021 0.979 5 C -0.588 4.588 6 H 0.081 0.919 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.803 3.197 10 H -0.197 1.197 11 H -0.199 1.199 12 H -0.188 1.188 13 O -0.267 6.267 14 C 0.272 3.728 15 O -0.426 6.426 16 C 0.092 3.908 17 O -0.280 6.280 18 C -0.081 4.081 19 C -0.182 4.182 20 C -0.002 4.002 21 O -0.311 6.311 22 C -0.005 4.005 23 C -0.206 4.206 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.132 0.868 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.576 5.260 -12.830 16.304 hybrid contribution 0.913 -0.763 1.213 1.699 sum -7.663 4.496 -11.617 14.625 Atomic orbital electron populations 1.21751 0.96240 1.00742 1.00030 1.21841 0.94483 0.97937 1.02318 1.20404 0.94626 0.89388 0.78656 0.97884 1.21302 0.90497 1.40061 1.06890 0.91880 1.25787 1.04231 0.93785 0.94290 1.70004 1.37463 1.37893 1.09838 0.85232 0.77705 0.78111 0.78693 1.19741 1.19856 1.18804 1.86565 1.35597 1.62355 1.42191 1.25072 0.79947 0.76417 0.91408 1.90591 1.56016 1.58689 1.37301 1.21573 0.95717 0.92969 0.80586 1.87964 1.70251 1.28058 1.41763 1.23130 0.99907 0.82793 1.02273 1.22307 1.02719 0.90708 1.02508 1.22606 0.80220 1.02164 0.95182 1.87905 1.20158 1.28366 1.94679 1.22652 0.99568 0.83132 0.95104 1.22721 0.91640 1.03701 1.02569 0.94388 0.91724 0.94661 0.93629 0.89541 0.91972 0.95809 0.91064 0.86803 0.89324 0.89681 0.91134 0.85923 0.85905 0.91208 0.89837 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.67 8.56 71.98 0.62 -5.05 16 2 C -0.13 -6.46 5.49 30.59 0.17 -6.29 16 3 C 0.22 12.28 2.25 29.85 0.07 12.35 16 4 H 0.00 0.21 7.16 -2.39 -0.02 0.19 16 5 C -0.55 -31.64 8.90 25.60 0.23 -31.42 16 6 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 7 C 0.02 1.05 5.29 84.65 0.45 1.50 16 8 N -0.91 -52.52 11.29 21.45 0.24 -52.27 16 9 Si 0.98 43.14 29.54 68.60 2.03 45.17 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 12 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 13 O -0.35 -17.29 9.21 -46.43 -0.43 -17.72 16 14 C 0.43 18.25 4.11 71.24 0.29 18.55 16 15 O -0.54 -25.28 13.19 21.98 0.29 -24.99 16 16 C 0.13 4.22 0.68 -11.41 -0.01 4.21 16 17 O -0.36 -10.84 9.10 -135.64 -1.23 -12.07 16 18 C 0.01 0.37 10.12 113.37 1.15 1.52 16 19 C -0.14 -4.05 5.13 30.69 0.16 -3.90 16 20 C 0.07 1.59 6.69 72.01 0.48 2.07 16 21 O -0.39 -8.98 10.77 -148.98 -1.60 -10.59 16 22 C 0.07 1.42 6.69 72.01 0.48 1.90 16 23 C -0.17 -4.37 4.14 30.69 0.13 -4.24 16 24 H 0.04 1.56 4.69 -2.39 -0.01 1.55 16 25 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 26 H 0.03 1.63 7.79 -2.39 -0.02 1.62 16 27 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.09 4.78 5.95 -2.39 -0.01 4.76 16 29 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.02 0.75 5.49 -2.38 -0.01 0.73 16 31 H 0.07 1.40 6.66 -2.39 -0.02 1.38 16 32 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.08 2.45 8.14 -2.39 -0.02 2.44 16 35 H 0.07 1.42 7.82 -2.38 -0.02 1.41 16 36 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 1.23 7.82 -2.38 -0.02 1.22 16 39 H 0.08 2.40 7.77 -2.39 -0.02 2.38 16 40 H 0.09 2.16 6.49 -2.39 -0.02 2.14 16 Total: -1.00 -67.72 313.23 4.53 -63.18 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 1.03 Total: 18.09 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 4.21 Total: -8.79 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.24 Total: -52.27 kcal Atomic # 8 Polarization: -62.40 SS G_CDS: -2.98 Total: -65.37 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -67.72 4.53 -63.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793279058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.463 kcal (2) G-P(sol) polarization free energy of solvation -67.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds