Wall clock time and date at job start Mon Mar 30 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42905 * 109.47225 * 2 1 4 4 C 1.42894 * 114.00031 * 180.02562 * 3 2 1 5 5 H 1.08997 * 113.09199 * 22.42687 * 4 3 2 6 6 C 1.53672 * 113.82435 * 250.49191 * 4 3 2 7 7 C 1.51406 * 87.41280 * 220.15010 * 6 4 3 8 8 N 1.28010 * 136.31847 * 205.75724 * 7 6 4 9 9 N 1.40101 * 119.99978 * 359.97438 * 8 7 6 10 10 C 1.46502 * 119.99856 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47328 * 30.00157 * 10 9 8 12 12 C 1.53006 * 109.47257 * 270.00499 * 10 9 8 13 13 C 1.50698 * 109.46843 * 150.00312 * 10 9 8 14 14 H 1.07997 * 119.99983 * 0.02562 * 13 10 9 15 15 C 1.37875 * 119.99789 * 179.97438 * 13 10 9 16 16 N 1.31516 * 120.00099 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 120.00084 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.46937 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47191 * 120.00305 * 17 15 13 20 20 H 1.48499 * 109.47231 * 240.00271 * 17 15 13 21 21 C 1.51406 * 87.36662 * 26.00642 * 7 6 4 22 22 H 1.08999 * 113.56431 * 88.62437 * 21 7 6 23 23 S 1.81404 * 113.56266 * 219.36423 * 21 7 6 24 24 C 1.81401 * 102.99842 * 275.49470 * 23 21 7 25 25 H 1.09006 * 109.46823 * 300.00229 * 1 2 3 26 26 H 1.08999 * 109.47157 * 59.99861 * 1 2 3 27 27 H 1.08995 * 109.46886 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47184 * 239.99869 * 2 1 3 29 29 H 1.09005 * 109.47182 * 119.99422 * 2 1 3 30 30 H 1.09005 * 113.56118 * 105.52364 * 6 4 3 31 31 H 1.08998 * 113.62998 * 334.79494 * 6 4 3 32 32 H 0.96995 * 119.99787 * 0.02562 * 9 8 7 33 33 H 1.08995 * 109.46740 * 59.99775 * 12 10 9 34 34 H 1.08994 * 109.47207 * 180.02562 * 12 10 9 35 35 H 1.09000 * 109.46672 * 300.00059 * 12 10 9 36 36 H 0.97003 * 119.99869 * 179.97438 * 16 15 13 37 37 H 1.09003 * 109.46693 * 300.00140 * 24 23 21 38 38 H 1.08991 * 109.47081 * 59.99457 * 24 23 21 39 39 H 1.08997 * 109.46930 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9301 0.5700 -0.3834 6 6 4.0132 1.9769 1.3243 7 6 4.9810 2.7985 0.4992 8 7 6.1482 3.2970 0.6660 9 7 6.8221 3.1118 1.8802 10 6 8.1577 3.6829 2.0711 11 1 8.2523 4.5922 1.4776 12 6 9.2141 2.6702 1.6245 13 6 8.3602 4.0106 3.5281 14 1 7.5730 3.8128 4.2405 15 6 9.5508 4.5618 3.9516 16 7 10.5096 4.8022 3.0840 17 14 9.8022 4.9674 5.7576 18 1 8.5817 4.6033 6.5212 19 1 10.9604 4.1993 6.2809 20 1 10.0646 6.4214 5.9066 21 6 3.9494 2.7727 -0.6087 22 1 3.2317 3.5913 -0.5549 23 16 4.6667 2.5719 -2.2628 24 6 5.1088 4.2695 -2.7247 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 4.4967 1.2021 1.9194 31 1 3.3136 2.5796 1.9034 32 1 6.4044 2.6055 2.5943 33 1 9.0675 2.4332 0.5707 34 1 10.2077 3.0949 1.7670 35 1 9.1194 1.7608 2.2180 36 1 11.3472 5.1904 3.3820 37 1 4.2125 4.8899 -2.7292 38 1 5.8227 4.6679 -2.0040 39 1 5.5561 4.2708 -3.7187 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807979478.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:41 Heat of formation + Delta-G solvation = 15.087883 kcal Electronic energy + Delta-G solvation = -18633.622756 eV Core-core repulsion = 15704.444245 eV Total energy + Delta-G solvation = -2929.178511 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.43459 -36.94931 -35.35648 -33.24701 -31.22822 -30.42034 -28.76649 -26.91292 -25.82154 -25.21021 -23.06697 -22.37317 -20.42685 -18.75775 -17.41123 -17.07719 -16.15431 -15.80213 -15.05439 -14.99186 -14.46265 -14.08863 -13.91590 -13.36727 -13.24710 -13.00289 -12.74060 -12.63652 -12.54128 -12.19540 -12.11570 -11.76747 -11.40838 -11.22299 -11.06112 -10.98919 -10.78300 -10.43330 -10.27000 -10.23763 -9.89351 -9.51726 -9.32161 -8.98940 -8.53341 -7.48410 -6.94770 -6.15342 -4.23490 1.75395 2.60717 2.98271 3.22003 3.28978 3.31892 3.44226 3.68602 4.33168 4.38561 4.59360 4.87811 4.91986 5.05687 5.17098 5.20460 5.29373 5.35218 5.39693 5.42479 5.52406 5.65718 5.72754 5.84644 5.92239 5.93874 5.99483 6.73975 6.99526 7.01724 7.12864 7.16653 7.57425 7.77225 7.86371 8.15152 8.30417 8.84814 9.35049 9.43621 10.90621 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.021737 B = 0.004016 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.834203 B = 6970.419056 C = 7903.422455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.370 6.370 4 C 0.104 3.896 5 H 0.100 0.900 6 C -0.127 4.127 7 C -0.035 4.035 8 N -0.159 5.159 9 N -0.626 5.626 10 C 0.299 3.701 11 H 0.040 0.960 12 C -0.151 4.151 13 C -0.529 4.529 14 H 0.060 0.940 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.902 3.098 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.013 3.987 22 H 0.118 0.882 23 S -0.257 6.257 24 C -0.116 4.116 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.370 0.630 33 H 0.013 0.987 34 H 0.089 0.911 35 H 0.025 0.975 36 H 0.264 0.736 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.457 -7.016 -7.331 18.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.289 6.289 4 C 0.044 3.956 5 H 0.117 0.883 6 C -0.170 4.170 7 C -0.232 4.232 8 N 0.031 4.969 9 N -0.362 5.362 10 C 0.197 3.803 11 H 0.058 0.942 12 C -0.210 4.210 13 C -0.569 4.569 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.523 5.523 17 Si 0.730 3.270 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.119 4.119 22 H 0.136 0.864 23 S -0.029 6.029 24 C -0.285 4.285 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.206 0.794 33 H 0.032 0.968 34 H 0.108 0.892 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.312 -7.042 -8.421 18.037 hybrid contribution -0.382 0.536 2.372 2.461 sum -14.694 -6.506 -6.049 17.171 Atomic orbital electron populations 1.21743 0.93787 1.02146 1.03132 1.22520 0.95498 0.83810 1.00273 1.87909 1.19944 1.26510 1.94499 1.23029 0.81015 0.96012 0.95561 0.88269 1.22860 0.97818 0.99562 0.96756 1.24173 0.93950 1.06572 0.98484 1.73057 1.04628 1.10616 1.08569 1.48845 1.18830 1.60442 1.08093 1.18528 0.74316 0.91695 0.95732 0.94198 1.22208 1.03695 0.98887 0.96209 1.21269 1.00562 1.42430 0.92595 0.92166 1.24859 0.95519 0.95163 0.98111 1.69905 1.05551 1.43142 1.33748 0.86376 0.78176 0.78107 0.84349 1.19773 1.20827 1.20829 1.23886 0.95915 1.01302 0.90752 0.86378 1.86522 1.80520 1.15072 1.20769 1.23323 1.04639 0.95241 1.05249 0.91863 0.91820 0.91203 0.93153 0.93219 0.90619 0.88318 0.79428 0.96765 0.89202 0.95572 0.92615 0.90861 0.89437 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.06 0.52 6.52 37.16 0.24 0.77 16 3 O -0.37 -4.53 10.37 -35.23 -0.37 -4.90 16 4 C 0.10 1.34 3.94 -26.04 -0.10 1.24 16 5 H 0.10 1.25 7.88 -51.93 -0.41 0.84 16 6 C -0.13 -1.77 7.48 -27.40 -0.21 -1.97 16 7 C -0.03 -0.59 8.00 -78.23 -0.63 -1.21 16 8 N -0.16 -3.28 11.50 35.94 0.41 -2.86 16 9 N -0.63 -13.91 6.09 -5.88 -0.04 -13.95 16 10 C 0.30 7.65 3.23 -69.08 -0.22 7.42 16 11 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 12 C -0.15 -3.74 9.29 37.16 0.35 -3.39 16 13 C -0.53 -14.21 8.74 -34.44 -0.30 -14.52 16 14 H 0.06 1.59 7.79 -52.49 -0.41 1.18 16 15 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 16 N -0.89 -24.67 11.32 55.43 0.63 -24.04 16 17 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.01 0.18 4.02 -27.40 -0.11 0.07 16 22 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 23 S -0.26 -3.72 22.18 -107.50 -2.38 -6.11 16 24 C -0.12 -1.46 10.76 101.05 1.09 -0.37 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.37 7.71 8.34 -182.60 -1.52 6.19 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 38 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 342.24 15.07 5.16 5.16 Total: -1.00 -28.63 342.24 -8.92 -37.55 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -7.71 Total: 4.49 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 0.39 Total: -11.06 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 1.00 Total: -40.85 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.37 Total: -4.90 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -2.38 Total: -6.11 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.63 -8.92 -37.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807979478.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.642 kcal (2) G-P(sol) polarization free energy of solvation -28.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds