Wall clock time and date at job start Mon Mar 30 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42905 * 109.47225 * 2 1 4 4 C 1.42894 * 114.00031 * 180.02562 * 3 2 1 5 5 H 1.08997 * 113.09199 * 22.42687 * 4 3 2 6 6 C 1.53672 * 113.82435 * 250.49191 * 4 3 2 7 7 C 1.51406 * 87.41280 * 220.15010 * 6 4 3 8 8 N 1.28010 * 136.31847 * 205.75724 * 7 6 4 9 9 N 1.40101 * 119.99978 * 359.97438 * 8 7 6 10 10 C 1.46502 * 119.99856 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47328 * 30.00157 * 10 9 8 12 12 C 1.53006 * 109.47257 * 270.00499 * 10 9 8 13 13 C 1.50698 * 109.46843 * 150.00312 * 10 9 8 14 14 H 1.07997 * 119.99983 * 0.02562 * 13 10 9 15 15 C 1.37875 * 119.99789 * 179.97438 * 13 10 9 16 16 N 1.31516 * 120.00099 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 120.00084 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.46937 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47191 * 120.00305 * 17 15 13 20 20 H 1.48499 * 109.47231 * 240.00271 * 17 15 13 21 21 C 1.51406 * 87.36662 * 26.00642 * 7 6 4 22 22 H 1.08999 * 113.56431 * 88.62437 * 21 7 6 23 23 S 1.81404 * 113.56266 * 219.36423 * 21 7 6 24 24 C 1.81401 * 102.99842 * 275.49470 * 23 21 7 25 25 H 1.09006 * 109.46823 * 300.00229 * 1 2 3 26 26 H 1.08999 * 109.47157 * 59.99861 * 1 2 3 27 27 H 1.08995 * 109.46886 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47184 * 239.99869 * 2 1 3 29 29 H 1.09005 * 109.47182 * 119.99422 * 2 1 3 30 30 H 1.09005 * 113.56118 * 105.52364 * 6 4 3 31 31 H 1.08998 * 113.62998 * 334.79494 * 6 4 3 32 32 H 0.96995 * 119.99787 * 0.02562 * 9 8 7 33 33 H 1.08995 * 109.46740 * 59.99775 * 12 10 9 34 34 H 1.08994 * 109.47207 * 180.02562 * 12 10 9 35 35 H 1.09000 * 109.46672 * 300.00059 * 12 10 9 36 36 H 0.97003 * 119.99869 * 179.97438 * 16 15 13 37 37 H 1.09003 * 109.46693 * 300.00140 * 24 23 21 38 38 H 1.08991 * 109.47081 * 59.99457 * 24 23 21 39 39 H 1.08997 * 109.46930 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9301 0.5700 -0.3834 6 6 4.0132 1.9769 1.3243 7 6 4.9810 2.7985 0.4992 8 7 6.1482 3.2970 0.6660 9 7 6.8221 3.1118 1.8802 10 6 8.1577 3.6829 2.0711 11 1 8.2523 4.5922 1.4776 12 6 9.2141 2.6702 1.6245 13 6 8.3602 4.0106 3.5281 14 1 7.5730 3.8128 4.2405 15 6 9.5508 4.5618 3.9516 16 7 10.5096 4.8022 3.0840 17 14 9.8022 4.9674 5.7576 18 1 8.5817 4.6033 6.5212 19 1 10.9604 4.1993 6.2809 20 1 10.0646 6.4214 5.9066 21 6 3.9494 2.7727 -0.6087 22 1 3.2317 3.5913 -0.5549 23 16 4.6667 2.5719 -2.2628 24 6 5.1088 4.2695 -2.7247 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 4.4967 1.2021 1.9194 31 1 3.3136 2.5796 1.9034 32 1 6.4044 2.6055 2.5943 33 1 9.0675 2.4332 0.5707 34 1 10.2077 3.0949 1.7670 35 1 9.1194 1.7608 2.2180 36 1 11.3472 5.1904 3.3820 37 1 4.2125 4.8899 -2.7292 38 1 5.8227 4.6679 -2.0040 39 1 5.5561 4.2708 -3.7187 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807979478.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:40 Heat of formation + Delta-G solvation = -1.835439 kcal Electronic energy + Delta-G solvation = -18634.356606 eV Core-core repulsion = 15704.444245 eV Total energy + Delta-G solvation = -2929.912362 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.57670 -38.20137 -36.92880 -34.96879 -32.67725 -31.58378 -29.80558 -28.59774 -27.28564 -27.00217 -23.89073 -23.45333 -22.31919 -20.23621 -18.74246 -18.24444 -17.84256 -17.01873 -16.59276 -16.17082 -15.64111 -15.52760 -15.07102 -14.71201 -14.46668 -14.26907 -14.17401 -13.95174 -13.79019 -13.36857 -13.22160 -13.00730 -12.91301 -12.83992 -12.57714 -12.31601 -12.18300 -12.09713 -11.96864 -11.84409 -11.19037 -11.09849 -10.59278 -10.57113 -10.47065 -8.72070 -8.55106 -8.18674 -6.35389 0.59756 1.40773 1.42188 1.42954 1.54575 1.70066 1.95704 2.42502 2.69242 3.10594 3.22317 3.43482 3.85653 3.98801 4.22933 4.27752 4.33922 4.35975 4.38912 4.49945 4.56107 4.66667 4.75363 4.79407 4.91066 4.98817 5.00102 5.09568 5.12615 5.32482 5.36009 5.55938 5.79309 5.88587 6.17644 6.23991 6.41396 6.84766 7.36368 7.80485 8.86854 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.021737 B = 0.004016 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.834203 B = 6970.419056 C = 7903.422455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.046 3.954 3 O -0.379 6.379 4 C 0.120 3.880 5 H 0.105 0.895 6 C -0.125 4.125 7 C -0.016 4.016 8 N -0.206 5.206 9 N -0.640 5.640 10 C 0.310 3.690 11 H 0.000 1.000 12 C -0.136 4.136 13 C -0.546 4.546 14 H 0.061 0.939 15 C 0.019 3.981 16 N -0.914 5.914 17 Si 0.970 3.030 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.280 1.280 21 C 0.012 3.988 22 H 0.131 0.869 23 S -0.275 6.275 24 C -0.110 4.110 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.374 0.626 33 H 0.016 0.984 34 H 0.068 0.932 35 H 0.030 0.970 36 H 0.267 0.733 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.310 -7.861 -6.993 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.298 6.298 4 C 0.060 3.940 5 H 0.123 0.877 6 C -0.168 4.168 7 C -0.214 4.214 8 N -0.013 5.013 9 N -0.377 5.377 10 C 0.207 3.793 11 H 0.017 0.983 12 C -0.195 4.195 13 C -0.585 4.585 14 H 0.079 0.921 15 C -0.181 4.181 16 N -0.553 5.553 17 Si 0.795 3.205 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.206 1.206 21 C -0.119 4.119 22 H 0.148 0.852 23 S -0.047 6.047 24 C -0.279 4.279 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.129 0.871 32 H 0.210 0.790 33 H 0.035 0.965 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.185 -7.900 -8.093 19.745 hybrid contribution 0.006 0.754 2.120 2.250 sum -16.179 -7.146 -5.973 18.668 Atomic orbital electron populations 1.21759 0.92468 1.03455 1.02837 1.22788 0.96592 0.82520 1.01101 1.87901 1.18966 1.28466 1.94425 1.22794 0.81862 0.95294 0.94095 0.87720 1.22963 0.97033 0.99376 0.97419 1.24953 0.93010 1.03181 1.00271 1.73111 1.06635 1.13438 1.08096 1.48335 1.18306 1.61836 1.09256 1.18094 0.76350 0.90320 0.94557 0.98255 1.22022 1.02451 0.98686 0.96376 1.21542 1.00867 1.42812 0.93289 0.92081 1.25706 0.95169 0.94851 1.02411 1.70027 1.05973 1.43571 1.35718 0.85326 0.78275 0.77788 0.79108 1.19071 1.20183 1.20571 1.24054 0.94972 1.02850 0.90023 0.85162 1.86586 1.80625 1.16920 1.20577 1.23368 1.05066 0.93989 1.05461 0.92133 0.92128 0.89130 0.92427 0.92316 0.89813 0.87106 0.78954 0.96484 0.91285 0.95128 0.92407 0.88931 0.91624 0.86763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 71.98 0.74 -1.15 16 2 C 0.05 0.74 6.52 71.98 0.47 1.21 16 3 O -0.38 -8.31 10.37 -148.98 -1.54 -9.85 16 4 C 0.12 2.83 3.94 31.04 0.12 2.96 16 5 H 0.11 2.39 7.88 -2.39 -0.02 2.37 16 6 C -0.13 -3.24 7.48 30.16 0.23 -3.02 16 7 C -0.02 -0.52 8.00 46.98 0.38 -0.14 16 8 N -0.21 -8.57 11.50 -40.13 -0.46 -9.03 16 9 N -0.64 -29.05 6.09 -172.51 -1.05 -30.10 16 10 C 0.31 16.39 3.23 44.25 0.14 16.53 16 11 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 12 C -0.14 -6.94 9.29 71.98 0.67 -6.27 16 13 C -0.55 -29.81 8.74 25.60 0.22 -29.58 16 14 H 0.06 3.24 7.79 -2.91 -0.02 3.22 16 15 C 0.02 1.02 5.30 84.65 0.45 1.47 16 16 N -0.91 -51.93 11.32 21.45 0.24 -51.69 16 17 Si 0.97 42.54 29.54 68.60 2.03 44.57 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 19 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 21 C 0.01 0.33 4.02 30.16 0.12 0.45 16 22 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 23 S -0.28 -7.61 22.18 -56.49 -1.25 -8.87 16 24 C -0.11 -2.66 10.76 113.37 1.22 -1.44 16 25 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 31 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.37 15.72 8.34 -213.33 -1.78 13.94 16 33 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 35 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -61.98 342.24 1.96 -60.02 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -0.76 Total: 23.93 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 4.76 Total: -18.98 kcal Atomic # 7 Polarization: -89.55 SS G_CDS: -1.27 Total: -90.82 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -1.54 Total: -9.85 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: -7.61 SS G_CDS: -1.25 Total: -8.87 kcal Total: -61.98 1.96 -60.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807979478.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.183 kcal (2) G-P(sol) polarization free energy of solvation -61.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds