Wall clock time and date at job start Mon Mar 30 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.47086 * 2 1 4 4 C 1.42898 * 113.99755 * 179.97438 * 3 2 1 5 5 H 1.09001 * 113.00794 * 18.14586 * 4 3 2 6 6 C 1.53969 * 114.05406 * 246.11096 * 4 3 2 7 7 C 1.51402 * 87.30389 * 271.65869 * 6 4 3 8 8 N 1.28012 * 136.31881 * 154.04800 * 7 6 4 9 9 N 1.40095 * 119.99665 * 359.62516 * 8 7 6 10 10 C 1.46510 * 119.99948 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47049 * 329.99795 * 10 9 8 12 12 C 1.53000 * 109.47169 * 90.00182 * 10 9 8 13 13 C 1.50705 * 109.46934 * 210.00111 * 10 9 8 14 14 H 1.07996 * 120.00242 * 356.70974 * 13 10 9 15 15 C 1.37875 * 119.99807 * 176.71454 * 13 10 9 16 16 N 1.31517 * 119.99900 * 352.63156 * 15 13 10 17 17 Si 1.86793 * 120.00084 * 172.35671 * 15 13 10 18 18 H 1.48504 * 109.47423 * 265.35150 * 17 15 13 19 19 H 1.48504 * 109.46960 * 25.35033 * 17 15 13 20 20 H 1.48505 * 109.47474 * 145.34836 * 17 15 13 21 21 C 1.51412 * 87.36781 * 333.78969 * 7 6 4 22 22 H 1.09001 * 113.55969 * 271.62892 * 21 7 6 23 23 S 1.81393 * 113.55977 * 140.96984 * 21 7 6 24 24 C 1.81409 * 103.00118 * 84.50683 * 23 21 7 25 25 H 1.09004 * 109.47364 * 300.00530 * 1 2 3 26 26 H 1.08997 * 109.47120 * 59.99940 * 1 2 3 27 27 H 1.08998 * 109.47312 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47251 * 239.99899 * 2 1 3 29 29 H 1.09003 * 109.46647 * 119.99306 * 2 1 3 30 30 H 1.08997 * 113.55603 * 157.07385 * 6 4 3 31 31 H 1.09006 * 113.65291 * 26.25413 * 6 4 3 32 32 H 0.96999 * 120.00439 * 0.02562 * 9 8 7 33 33 H 1.08999 * 109.47211 * 178.27155 * 12 10 9 34 34 H 1.08999 * 109.47129 * 298.27140 * 12 10 9 35 35 H 1.09001 * 109.46980 * 58.26888 * 12 10 9 36 36 H 0.97000 * 120.00230 * 179.72751 * 16 15 13 37 37 H 1.09001 * 109.46790 * 59.99770 * 24 23 21 38 38 H 1.08996 * 109.47164 * 180.02562 * 24 23 21 39 39 H 1.09004 * 109.47011 * 299.99779 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9310 0.5433 -0.3115 6 6 4.0110 2.0774 1.2863 7 6 3.8349 3.4307 0.6307 8 7 3.6664 4.6364 1.0266 9 7 3.6034 4.9212 2.3969 10 6 3.4100 6.3009 2.8501 11 1 3.8496 6.9864 2.1255 12 6 1.9132 6.5893 2.9821 13 6 4.0776 6.4884 4.1881 14 1 4.5484 5.6495 4.6790 15 6 4.0873 7.7309 4.7857 16 7 3.6445 8.7803 4.1281 17 14 4.7221 7.9225 6.5319 18 1 3.5831 7.8579 7.4826 19 1 5.6807 6.8290 6.8329 20 1 5.4072 9.2330 6.6686 21 6 3.9538 2.7226 -0.7024 22 1 4.9805 2.6304 -1.0567 23 16 2.8279 3.3685 -1.9695 24 6 3.7431 4.7807 -2.6471 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.0530 1.8122 1.4651 31 1 3.3806 1.9331 2.1638 32 1 3.6879 4.2050 3.0456 33 1 1.7700 7.6058 3.3486 34 1 1.4356 6.4836 2.0081 35 1 1.4678 5.8839 3.6836 36 1 3.6476 9.6538 4.5498 37 1 4.6888 4.4344 -3.0641 38 1 3.1519 5.2546 -3.4306 39 1 3.9384 5.5018 -1.8533 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807979483.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:43 Heat of formation + Delta-G solvation = 20.831993 kcal Electronic energy + Delta-G solvation = -18899.548304 eV Core-core repulsion = 15970.618876 eV Total energy + Delta-G solvation = -2928.929428 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.43250 -36.73074 -35.24918 -33.15616 -31.08170 -30.39842 -28.66884 -26.90834 -25.78649 -25.13648 -22.92519 -22.42701 -20.37971 -18.75760 -17.16716 -17.05432 -15.96749 -15.71533 -15.01378 -14.97242 -14.40742 -14.00667 -13.95015 -13.30817 -13.27628 -13.04366 -12.68317 -12.51169 -12.40924 -12.06132 -11.91394 -11.62793 -11.40817 -11.05272 -10.96549 -10.90954 -10.73566 -10.43242 -10.24973 -10.14706 -9.77947 -9.47183 -9.19605 -8.96138 -8.46047 -7.32344 -6.83800 -6.12722 -4.17909 1.86832 2.75800 3.12914 3.25309 3.31937 3.33960 3.50509 3.62156 4.36915 4.43845 4.60501 4.98093 4.99923 5.16635 5.20916 5.26739 5.31059 5.34670 5.44298 5.49901 5.52724 5.72660 5.84080 5.85544 6.00649 6.01139 6.07958 6.79095 7.02675 7.10620 7.17869 7.22984 7.61204 7.82435 7.83347 8.21635 8.35517 8.90827 9.45950 9.48748 10.95198 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.021339 B = 0.004333 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.820830 B = 6460.600590 C = 7046.910209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.345 6.345 4 C 0.104 3.896 5 H 0.087 0.913 6 C -0.135 4.135 7 C -0.020 4.020 8 N -0.168 5.168 9 N -0.628 5.628 10 C 0.299 3.701 11 H 0.044 0.956 12 C -0.145 4.145 13 C -0.529 4.529 14 H 0.059 0.941 15 C 0.068 3.932 16 N -0.885 5.885 17 Si 0.899 3.101 18 H -0.279 1.279 19 H -0.274 1.274 20 H -0.285 1.285 21 C -0.005 4.005 22 H 0.119 0.881 23 S -0.221 6.221 24 C -0.129 4.129 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.368 0.632 33 H 0.075 0.925 34 H 0.017 0.983 35 H 0.026 0.974 36 H 0.264 0.736 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.663 -16.108 -10.071 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.263 6.263 4 C 0.043 3.957 5 H 0.105 0.895 6 C -0.178 4.178 7 C -0.217 4.217 8 N 0.023 4.977 9 N -0.364 5.364 10 C 0.197 3.803 11 H 0.062 0.938 12 C -0.205 4.205 13 C -0.569 4.569 14 H 0.077 0.923 15 C -0.135 4.135 16 N -0.522 5.522 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.199 1.199 20 H -0.211 1.211 21 C -0.136 4.136 22 H 0.136 0.864 23 S 0.007 5.993 24 C -0.298 4.298 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.204 0.796 33 H 0.094 0.906 34 H 0.036 0.964 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.979 -14.900 -10.657 18.426 hybrid contribution 1.829 -0.474 1.975 2.733 sum -0.150 -15.374 -8.682 17.657 Atomic orbital electron populations 1.21720 0.93704 1.01892 1.03480 1.22536 0.95767 0.83977 0.99781 1.88071 1.18388 1.25712 1.94131 1.22448 0.82795 0.95107 0.95347 0.89473 1.22955 1.01355 0.95412 0.98079 1.24402 1.10905 0.90200 0.96232 1.73022 1.05726 1.16176 1.02728 1.48717 1.81220 1.10199 0.96306 1.18486 0.91977 0.75701 0.94129 0.93843 1.22133 0.98620 1.02163 0.97568 1.21215 1.36749 0.95283 1.03641 0.92282 1.24854 0.95214 0.95377 0.98077 1.69961 1.46449 0.99229 1.36563 0.86470 0.78866 0.77565 0.84416 1.20536 1.19902 1.21101 1.24119 1.00701 0.96088 0.92690 0.86357 1.86807 1.31413 1.36680 1.44413 1.23399 1.02507 0.99875 1.04041 0.91781 0.91662 0.91343 0.93364 0.93501 0.88401 0.90275 0.79619 0.90602 0.96418 0.95448 0.92623 0.91240 0.88676 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.16 0.38 -1.06 16 2 C 0.06 0.58 6.50 37.16 0.24 0.82 16 3 O -0.34 -4.84 9.39 -35.23 -0.33 -5.17 16 4 C 0.10 1.28 4.33 -25.88 -0.11 1.17 16 5 H 0.09 0.79 7.87 -51.93 -0.41 0.38 16 6 C -0.14 -1.85 7.51 -27.25 -0.20 -2.05 16 7 C -0.02 -0.35 7.92 -78.23 -0.62 -0.97 16 8 N -0.17 -3.60 11.50 35.94 0.41 -3.19 16 9 N -0.63 -14.45 6.09 -5.87 -0.04 -14.49 16 10 C 0.30 7.84 3.12 -69.07 -0.22 7.63 16 11 H 0.04 1.27 8.14 -51.93 -0.42 0.85 16 12 C -0.15 -3.69 9.35 37.16 0.35 -3.34 16 13 C -0.53 -14.47 8.69 -34.44 -0.30 -14.77 16 14 H 0.06 1.58 7.78 -52.49 -0.41 1.17 16 15 C 0.07 1.86 5.21 -17.82 -0.09 1.77 16 16 N -0.88 -25.15 11.91 55.43 0.66 -24.49 16 17 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.00 -0.07 4.14 -27.40 -0.11 -0.18 16 22 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 23 S -0.22 -3.32 21.43 -107.50 -2.30 -5.63 16 24 C -0.13 -1.69 10.76 101.05 1.09 -0.60 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.37 7.96 8.33 -182.60 -1.52 6.44 16 33 H 0.08 2.04 6.59 -51.93 -0.34 1.70 16 34 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 LS Contribution 341.86 15.07 5.15 5.15 Total: -1.00 -30.47 341.86 -8.80 -39.27 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.73 Total: 4.16 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 0.40 Total: -11.59 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 1.04 Total: -42.17 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.33 Total: -5.17 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -3.32 SS G_CDS: -2.30 Total: -5.63 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.47 -8.80 -39.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807979483.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.104 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds