Wall clock time and date at job start Mon Mar 30 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.47086 * 2 1 4 4 C 1.42898 * 113.99755 * 179.97438 * 3 2 1 5 5 H 1.09001 * 113.00794 * 18.14586 * 4 3 2 6 6 C 1.53969 * 114.05406 * 246.11096 * 4 3 2 7 7 C 1.51402 * 87.30389 * 271.65869 * 6 4 3 8 8 N 1.28012 * 136.31881 * 154.04800 * 7 6 4 9 9 N 1.40095 * 119.99665 * 359.62516 * 8 7 6 10 10 C 1.46510 * 119.99948 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47049 * 329.99795 * 10 9 8 12 12 C 1.53000 * 109.47169 * 90.00182 * 10 9 8 13 13 C 1.50705 * 109.46934 * 210.00111 * 10 9 8 14 14 H 1.07996 * 120.00242 * 356.70974 * 13 10 9 15 15 C 1.37875 * 119.99807 * 176.71454 * 13 10 9 16 16 N 1.31517 * 119.99900 * 352.63156 * 15 13 10 17 17 Si 1.86793 * 120.00084 * 172.35671 * 15 13 10 18 18 H 1.48504 * 109.47423 * 265.35150 * 17 15 13 19 19 H 1.48504 * 109.46960 * 25.35033 * 17 15 13 20 20 H 1.48505 * 109.47474 * 145.34836 * 17 15 13 21 21 C 1.51412 * 87.36781 * 333.78969 * 7 6 4 22 22 H 1.09001 * 113.55969 * 271.62892 * 21 7 6 23 23 S 1.81393 * 113.55977 * 140.96984 * 21 7 6 24 24 C 1.81409 * 103.00118 * 84.50683 * 23 21 7 25 25 H 1.09004 * 109.47364 * 300.00530 * 1 2 3 26 26 H 1.08997 * 109.47120 * 59.99940 * 1 2 3 27 27 H 1.08998 * 109.47312 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47251 * 239.99899 * 2 1 3 29 29 H 1.09003 * 109.46647 * 119.99306 * 2 1 3 30 30 H 1.08997 * 113.55603 * 157.07385 * 6 4 3 31 31 H 1.09006 * 113.65291 * 26.25413 * 6 4 3 32 32 H 0.96999 * 120.00439 * 0.02562 * 9 8 7 33 33 H 1.08999 * 109.47211 * 178.27155 * 12 10 9 34 34 H 1.08999 * 109.47129 * 298.27140 * 12 10 9 35 35 H 1.09001 * 109.46980 * 58.26888 * 12 10 9 36 36 H 0.97000 * 120.00230 * 179.72751 * 16 15 13 37 37 H 1.09001 * 109.46790 * 59.99770 * 24 23 21 38 38 H 1.08996 * 109.47164 * 180.02562 * 24 23 21 39 39 H 1.09004 * 109.47011 * 299.99779 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9310 0.5433 -0.3115 6 6 4.0110 2.0774 1.2863 7 6 3.8349 3.4307 0.6307 8 7 3.6664 4.6364 1.0266 9 7 3.6034 4.9212 2.3969 10 6 3.4100 6.3009 2.8501 11 1 3.8496 6.9864 2.1255 12 6 1.9132 6.5893 2.9821 13 6 4.0776 6.4884 4.1881 14 1 4.5484 5.6495 4.6790 15 6 4.0873 7.7309 4.7857 16 7 3.6445 8.7803 4.1281 17 14 4.7221 7.9225 6.5319 18 1 3.5831 7.8579 7.4826 19 1 5.6807 6.8290 6.8329 20 1 5.4072 9.2330 6.6686 21 6 3.9538 2.7226 -0.7024 22 1 4.9805 2.6304 -1.0567 23 16 2.8279 3.3685 -1.9695 24 6 3.7431 4.7807 -2.6471 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.0530 1.8122 1.4651 31 1 3.3806 1.9331 2.1638 32 1 3.6879 4.2050 3.0456 33 1 1.7700 7.6058 3.3486 34 1 1.4356 6.4836 2.0081 35 1 1.4678 5.8839 3.6836 36 1 3.6476 9.6538 4.5498 37 1 4.6888 4.4344 -3.0641 38 1 3.1519 5.2546 -3.4306 39 1 3.9384 5.5018 -1.8533 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807979483.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:43 Heat of formation + Delta-G solvation = 1.611941 kcal Electronic energy + Delta-G solvation = -18900.381748 eV Core-core repulsion = 15970.618876 eV Total energy + Delta-G solvation = -2929.762872 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.53886 -38.04446 -36.82143 -34.90728 -32.66792 -31.55421 -29.73153 -28.62569 -27.25920 -26.91398 -23.76963 -23.54455 -22.30332 -20.18346 -18.70015 -18.13194 -17.64419 -16.97933 -16.54512 -16.07926 -15.67310 -15.53688 -15.03628 -14.68367 -14.49984 -14.26821 -14.14061 -13.99322 -13.70853 -13.38981 -13.09058 -12.95114 -12.82841 -12.73517 -12.47680 -12.39543 -12.16945 -11.98102 -11.90071 -11.81290 -11.12362 -11.03533 -10.56796 -10.47057 -10.37607 -8.62309 -8.43262 -8.19608 -6.34364 0.73109 1.41592 1.42855 1.53333 1.55505 1.86609 2.06600 2.43995 2.61607 3.10280 3.37927 3.46863 4.05617 4.17219 4.25790 4.28319 4.36912 4.38493 4.38831 4.56526 4.59070 4.71009 4.75188 4.84914 4.94085 4.95499 4.98311 5.08550 5.09014 5.31357 5.35603 5.56382 5.73827 5.87032 6.23173 6.37322 6.44551 6.87181 7.36580 7.90604 8.87589 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.021339 B = 0.004333 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.820830 B = 6460.600590 C = 7046.910209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.379 6.379 4 C 0.115 3.885 5 H 0.135 0.865 6 C -0.134 4.134 7 C -0.008 4.008 8 N -0.225 5.225 9 N -0.645 5.645 10 C 0.311 3.689 11 H 0.000 1.000 12 C -0.130 4.130 13 C -0.546 4.546 14 H 0.061 0.939 15 C 0.019 3.981 16 N -0.917 5.917 17 Si 0.970 3.030 18 H -0.272 1.272 19 H -0.267 1.267 20 H -0.282 1.282 21 C -0.003 4.003 22 H 0.152 0.848 23 S -0.256 6.256 24 C -0.121 4.121 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.131 0.869 31 H 0.070 0.930 32 H 0.371 0.629 33 H 0.055 0.945 34 H 0.015 0.985 35 H 0.032 0.968 36 H 0.267 0.733 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.418 -18.794 -10.220 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.298 6.298 4 C 0.054 3.946 5 H 0.152 0.848 6 C -0.176 4.176 7 C -0.207 4.207 8 N -0.031 5.031 9 N -0.382 5.382 10 C 0.207 3.793 11 H 0.018 0.982 12 C -0.189 4.189 13 C -0.585 4.585 14 H 0.079 0.921 15 C -0.181 4.181 16 N -0.555 5.555 17 Si 0.794 3.206 18 H -0.198 1.198 19 H -0.191 1.191 20 H -0.207 1.207 21 C -0.134 4.134 22 H 0.170 0.830 23 S -0.028 6.028 24 C -0.289 4.289 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.148 0.852 31 H 0.088 0.912 32 H 0.207 0.793 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.126 0.874 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.904 -17.608 -10.818 20.685 hybrid contribution 1.478 0.207 1.839 2.369 sum 0.574 -17.402 -8.979 19.590 Atomic orbital electron populations 1.21754 0.93822 1.03191 1.02029 1.22763 0.95780 0.82593 1.01428 1.88046 1.19409 1.28235 1.94151 1.22544 0.82584 0.96053 0.93423 0.84778 1.23158 1.03317 0.92664 0.98465 1.25534 1.04968 0.90611 0.99586 1.73092 1.09895 1.18719 1.01418 1.48201 1.83736 1.08725 0.97503 1.18042 0.91585 0.76943 0.92759 0.98238 1.21950 0.98680 1.00942 0.97357 1.21484 1.37087 0.95652 1.04239 0.92094 1.25730 0.95321 0.94915 1.02128 1.70090 1.47357 0.99717 1.38305 0.85376 0.78458 0.77622 0.79134 1.19796 1.19092 1.20729 1.24521 1.02407 0.95915 0.90536 0.83016 1.86946 1.33307 1.37672 1.44889 1.23400 1.03693 0.98441 1.03395 0.93474 0.92844 0.88685 0.91317 0.92026 0.85161 0.91168 0.79313 0.92592 0.96578 0.94865 0.92434 0.88727 0.87392 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 10.28 71.98 0.74 -1.91 16 2 C 0.05 0.88 6.50 71.98 0.47 1.35 16 3 O -0.38 -9.79 9.39 -148.98 -1.40 -11.19 16 4 C 0.11 2.41 4.33 31.14 0.13 2.55 16 5 H 0.13 1.65 7.87 -2.39 -0.02 1.63 16 6 C -0.13 -3.28 7.51 30.26 0.23 -3.06 16 7 C -0.01 -0.28 7.92 46.97 0.37 0.09 16 8 N -0.23 -9.87 11.50 -40.13 -0.46 -10.34 16 9 N -0.65 -30.68 6.09 -172.50 -1.05 -31.73 16 10 C 0.31 17.03 3.12 44.24 0.14 17.17 16 11 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 12 C -0.13 -6.87 9.35 71.98 0.67 -6.19 16 13 C -0.55 -30.52 8.69 25.60 0.22 -30.29 16 14 H 0.06 3.30 7.78 -2.91 -0.02 3.28 16 15 C 0.02 1.07 5.21 84.65 0.44 1.52 16 16 N -0.92 -53.52 11.91 21.45 0.26 -53.26 16 17 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 21 C 0.00 -0.07 4.14 30.16 0.12 0.06 16 22 H 0.15 2.88 8.14 -2.39 -0.02 2.86 16 23 S -0.26 -7.37 21.43 -56.49 -1.21 -8.58 16 24 C -0.12 -3.03 10.76 113.37 1.22 -1.81 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.37 16.42 8.33 -213.32 -1.78 14.64 16 33 H 0.06 3.14 6.59 -2.39 -0.02 3.12 16 34 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -69.07 341.86 2.17 -66.91 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -0.76 Total: 23.47 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: 4.76 Total: -20.53 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -1.26 Total: -95.32 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -1.40 Total: -11.19 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: -7.37 SS G_CDS: -1.21 Total: -8.58 kcal Total: -69.07 2.17 -66.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807979483.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.519 kcal (2) G-P(sol) polarization free energy of solvation -69.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds