Wall clock time and date at job start Mon Mar 30 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.47054 * 2 1 4 4 C 1.42902 * 113.99954 * 179.97438 * 3 2 1 5 5 H 1.08992 * 113.00491 * 18.14564 * 4 3 2 6 6 C 1.53967 * 114.05203 * 246.10806 * 4 3 2 7 7 C 1.51403 * 87.30723 * 271.65890 * 6 4 3 8 8 N 1.28006 * 136.31530 * 154.04981 * 7 6 4 9 9 N 1.40097 * 120.00090 * 359.63016 * 8 7 6 10 10 C 1.46505 * 119.99946 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47050 * 29.99458 * 10 9 8 12 12 C 1.53002 * 109.46742 * 269.99499 * 10 9 8 13 13 C 1.50704 * 109.46953 * 149.99747 * 10 9 8 14 14 H 1.07997 * 120.00516 * 35.00145 * 13 10 9 15 15 C 1.37878 * 119.99798 * 214.99861 * 13 10 9 16 16 N 1.31508 * 120.00170 * 184.91555 * 15 13 10 17 17 Si 1.86807 * 119.99876 * 4.91681 * 15 13 10 18 18 H 1.48503 * 109.47044 * 84.83582 * 17 15 13 19 19 H 1.48503 * 109.47110 * 204.83208 * 17 15 13 20 20 H 1.48499 * 109.47347 * 324.83521 * 17 15 13 21 21 C 1.51408 * 87.36627 * 333.78786 * 7 6 4 22 22 H 1.08996 * 113.56528 * 271.63244 * 21 7 6 23 23 S 1.81404 * 113.55917 * 140.96762 * 21 7 6 24 24 C 1.81398 * 102.99778 * 84.50653 * 23 21 7 25 25 H 1.08996 * 109.46872 * 60.00450 * 1 2 3 26 26 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46882 * 300.00177 * 1 2 3 28 28 H 1.08996 * 109.47432 * 240.00073 * 2 1 3 29 29 H 1.09004 * 109.47216 * 119.99405 * 2 1 3 30 30 H 1.09003 * 113.55655 * 157.07459 * 6 4 3 31 31 H 1.08999 * 113.65707 * 26.25963 * 6 4 3 32 32 H 0.96998 * 119.99980 * 359.97438 * 9 8 7 33 33 H 1.09006 * 109.46837 * 175.02864 * 12 10 9 34 34 H 1.09000 * 109.46990 * 55.02883 * 12 10 9 35 35 H 1.08994 * 109.47058 * 295.02684 * 12 10 9 36 36 H 0.97003 * 119.99870 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47165 * 60.00485 * 24 23 21 38 38 H 1.08997 * 109.47001 * 180.02562 * 24 23 21 39 39 H 1.08996 * 109.47499 * 299.99849 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9309 0.5433 -0.3115 6 6 4.0109 2.0775 1.2862 7 6 3.8348 3.4308 0.6306 8 7 3.6663 4.6364 1.0266 9 7 3.6034 4.9213 2.3969 10 6 3.4099 6.3010 2.8501 11 1 2.8311 6.8497 2.1071 12 6 4.7721 6.9731 3.0337 13 6 2.6696 6.2993 4.1627 14 1 2.8454 5.5122 4.8810 15 6 1.7677 7.3029 4.4467 16 7 1.1939 7.3561 5.6288 17 14 1.3609 8.5869 3.1523 18 1 0.2925 8.0692 2.2602 19 1 0.8917 9.8289 3.8175 20 1 2.5751 8.8832 2.3503 21 6 3.9539 2.7227 -0.7023 22 1 4.9805 2.6305 -1.0566 23 16 2.8279 3.3686 -1.9696 24 6 3.7430 4.7807 -2.6470 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 5.0530 1.8124 1.4652 31 1 3.3806 1.9332 2.1637 32 1 3.6872 4.2049 3.0455 33 1 4.6278 8.0239 3.2851 34 1 5.3429 6.8960 2.1083 35 1 5.3159 6.4784 3.8384 36 1 0.5596 8.0623 5.8287 37 1 4.6887 4.4345 -3.0641 38 1 3.1518 5.2546 -3.4306 39 1 3.9382 5.5018 -1.8533 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807979484.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:45 Heat of formation + Delta-G solvation = 22.250704 kcal Electronic energy + Delta-G solvation = -19007.435352 eV Core-core repulsion = 16078.567444 eV Total energy + Delta-G solvation = -2928.867908 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.45827 -36.77846 -35.34906 -33.05717 -31.38740 -30.64409 -28.74402 -27.22643 -25.84399 -25.20901 -22.90241 -22.44455 -20.19870 -18.90662 -17.36534 -17.09918 -16.25010 -15.72247 -15.09419 -15.04967 -14.41640 -14.01263 -13.88666 -13.37997 -13.31764 -13.08990 -12.77395 -12.60110 -12.45305 -12.36423 -12.02351 -11.83751 -11.63881 -11.07577 -11.00664 -10.92381 -10.88859 -10.72340 -10.24485 -9.85579 -9.84566 -9.47770 -9.29120 -9.06339 -8.64988 -7.37148 -6.92832 -6.20168 -4.22596 1.81312 2.69940 3.05906 3.26851 3.35075 3.38878 3.50312 3.52200 4.34256 4.41303 4.56340 4.96758 5.02705 5.14287 5.17566 5.26586 5.27570 5.30464 5.36955 5.45508 5.51595 5.70680 5.82931 5.87907 5.92112 6.00067 6.12416 6.33293 6.56209 6.71858 6.82975 7.17502 7.23661 7.33029 7.60442 8.16610 8.45180 8.82561 9.36208 9.42272 10.92024 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.005190 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.723615 B = 5393.595160 C = 5899.320016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.344 6.344 4 C 0.104 3.896 5 H 0.088 0.912 6 C -0.137 4.137 7 C -0.013 4.013 8 N -0.178 5.178 9 N -0.626 5.626 10 C 0.267 3.733 11 H 0.041 0.959 12 C -0.150 4.150 13 C -0.524 4.524 14 H 0.076 0.924 15 C 0.081 3.919 16 N -0.890 5.890 17 Si 0.877 3.123 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.262 1.262 21 C -0.006 4.006 22 H 0.119 0.881 23 S -0.218 6.218 24 C -0.130 4.130 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.372 0.628 33 H 0.050 0.950 34 H 0.025 0.975 35 H 0.045 0.955 36 H 0.267 0.733 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.385 -13.214 -14.002 19.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.263 6.263 4 C 0.043 3.957 5 H 0.106 0.894 6 C -0.179 4.179 7 C -0.210 4.210 8 N 0.014 4.986 9 N -0.362 5.362 10 C 0.164 3.836 11 H 0.059 0.941 12 C -0.209 4.209 13 C -0.564 4.564 14 H 0.094 0.906 15 C -0.124 4.124 16 N -0.527 5.527 17 Si 0.704 3.296 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.187 1.187 21 C -0.138 4.138 22 H 0.137 0.863 23 S 0.010 5.990 24 C -0.299 4.299 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.209 0.791 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.958 -12.116 -14.479 19.290 hybrid contribution 1.214 0.036 0.480 1.306 sum 5.172 -12.080 -13.999 19.201 Atomic orbital electron populations 1.21724 0.93647 1.01916 1.03567 1.22539 0.95836 0.83875 0.99757 1.88083 1.18258 1.25819 1.94105 1.22437 0.82952 0.95046 0.95246 0.89420 1.22974 1.01399 0.95231 0.98340 1.24413 1.10123 0.90216 0.96273 1.72999 1.06195 1.16490 1.02869 1.48846 1.81394 1.09576 0.96408 1.18864 0.92542 0.77666 0.94498 0.94063 1.22341 0.99359 1.00385 0.98830 1.21031 1.23466 1.11829 1.00028 0.90593 1.24937 0.94615 0.97453 0.95360 1.69881 1.28462 1.33577 1.20743 0.86858 0.79675 0.81024 0.82040 1.19749 1.21238 1.18707 1.24156 1.00733 0.96216 0.92670 0.86308 1.86900 1.31238 1.36565 1.44333 1.23394 1.02573 0.99948 1.03984 0.91695 0.91321 0.91647 0.93401 0.93441 0.88369 0.89977 0.79137 0.93084 0.95580 0.93580 0.92265 0.91231 0.88665 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 37.16 0.38 -1.17 16 2 C 0.06 0.60 6.50 37.16 0.24 0.85 16 3 O -0.34 -4.96 9.39 -35.23 -0.33 -5.29 16 4 C 0.10 1.28 4.33 -25.88 -0.11 1.17 16 5 H 0.09 0.78 7.87 -51.93 -0.41 0.37 16 6 C -0.14 -1.84 7.51 -27.25 -0.20 -2.04 16 7 C -0.01 -0.22 7.92 -78.23 -0.62 -0.84 16 8 N -0.18 -3.67 11.50 35.93 0.41 -3.26 16 9 N -0.63 -13.95 6.09 -5.88 -0.04 -13.98 16 10 C 0.27 6.56 2.89 -69.08 -0.20 6.36 16 11 H 0.04 1.07 5.29 -51.93 -0.27 0.80 16 12 C -0.15 -3.30 9.50 37.16 0.35 -2.95 16 13 C -0.52 -14.62 9.08 -34.44 -0.31 -14.93 16 14 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 15 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 16 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 17 Si 0.88 21.77 26.99 -169.99 -4.59 17.18 16 18 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.26 -6.25 6.82 56.52 0.39 -5.87 16 21 C -0.01 -0.09 4.14 -27.40 -0.11 -0.20 16 22 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 23 S -0.22 -3.24 21.43 -107.50 -2.30 -5.55 16 24 C -0.13 -1.62 10.76 101.05 1.09 -0.53 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.37 7.94 8.36 -182.60 -1.53 6.42 16 33 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 340.64 15.07 5.13 5.13 Total: -1.00 -31.71 340.64 -8.24 -39.94 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -7.70 Total: 3.87 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 0.40 Total: -12.08 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 1.15 Total: -43.21 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.33 Total: -5.29 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.59 Total: 17.18 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.30 Total: -5.55 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.71 -8.24 -39.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807979484.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.196 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds